Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g00255 | AAAGAGAAAGAAGGAAGGAAAATGGGAGATGTAGAAGGTTCCCCAGGAAGCTCTATGCATGGGGTGACCGGAAGAGAGCAAAGTTTTGCATTTTCCGTAGCTTCCCCAATTGTCCCAACGGACACAACCGCGAAATTTGCATTACCCGTTGACTCTGAGCACAAAGCGAAGGTTTTCAAGGTGTGGTCTTTAGCCAACCCCCACATGAGAACCTTCCACCTTTCTTGGATTTCCTTCTTTACATGCTTCGTCTCCACATTCGCAGCCGCCCCTCTGGTCCCCATCATTCGAGACAATCTCAACCTCACCAAAGTTGACATCGGTAACGCCGGAGTCACCTCCGTGTCTGGCAGTATCTTCTCTCGTCTTGTAATGGGGGCTGTGTGTGACCTTCTGGGGCCACGCTATGGGTGTGCCTTTCTCATTATGCTCTCCGCCCCCACCGTGTTTTGTATGTCCTTTGTGTCCAACGCTGCTGGGTATATAGCTGTGAGATTCATGATTGGCTTCTCGCTTGCCACCTTCGTCTCCTGCCAGTATTGGATGAGCACCATGTTCAACAGTCAGATCATTGGGCTTGTGAATGGGACTGCTGCTGGGTGGGGGAATATGGGCGGAGGAGCCACTCAGCTCATCATGCCTTTGTTGTACGATGTCATTCAGAGAGCTGGCGCTACTCCTTTCACTGCTTGGAGGATTGCCTTCTTTATCCCTGGTTCCCTTCATATTCTCATGGGCATTTTGGTCTTAACTCTTGGCCAGGACTTGCCTGATGGTAACCTTACCAGTCTTCAGAAGAAGGGCAATGTTGCCAAAGATAAATTCTCCAATATCCTGTGGTACGCTGTCACCAATTACCGAACTTGGATCTTCGTCCTCCTCTATGGCTACTCCATGGGCGTCGAACTTTCCACCGATAACGTCATTGCCGAATACTTCTACGACAGGTTTGATCTAAAGCTACACACGGCAGGAATTATCGCAGCAACGTTCGGGATGGCGAATCTAGTGGCTCGACCGTTCGGGGGGTATGCATCGGACGTGGCAGCGCGGTACTTTGGGATGAGAGGAAGGCTGTGGACTTTGTGGATCCTACAAACATGTGGGGGAGTGTTTTGCATGTGGCTTGGGAAAGCAAACAAACTGCCAACAGCAATAGTTGCAATGATATTGTTCTCAATAGGAGCACAGGCTGCATGTGGAGCAACATTTGGGATCATTCCCTTCATTTCTCGACGGTCTTTAGGAATTATATCAGGACTGACAGGAGCAGGAGGAAACTTTGGAAGTGGTTTGACACAATTAGTGTTCTTCTCAACCACCAAATACTCAACAGACACAGGCTTGTTCTTGATGGGAATAATGATTGTATGTTGCACTTTACCAGTCAGTTTGGTTCATTTCCCTCAATGGGGAAGCATGTTTTTACCTCCCACGAAACATGTTGAAAAATCCACTGAGGAATTTTATTATGGTTCTGAATGGACTGAGGATGAAAAGAAGAAGGGTTTGCATCAACAAAGCATTAAGTTTGCTGAGAATAGCAGATCTGAACGTGGTAGGCGTGTGGCTTCAGCTCCAACTCCACCAAATACAACTCCTTCCCATGTTTAA | 1614 | 47.89 | KEKEGRKMGDVEGSPGSSMHGVTGREQSFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKVWSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSNAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDVIQRAGATPFTAWRIAFFIPGSLHILMGILVLTLGQDLPDGNLTSLQKKGNVAKDKFSNILWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDVAARYFGMRGRLWTLWILQTCGGVFCMWLGKANKLPTAIVAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTTKYSTDTGLFLMGIMIVCCTLPVSLVHFPQWGSMFLPPTKHVEKSTEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRRVASAPTPPNTTPSHV | 537 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3036860 | 3038864 | - | ClCG03G002640.1 | Cla03g00255 | 268755 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g00255 | 537 | Gene3D | MFS general substrate transporter like domains | 271 | 471 | IPR036259 | - | |
| Cla03g00255 | 537 | Pfam | Major Facilitator Superfamily | 76 | 432 | IPR011701 | GO:0022857|GO:0055085 | |
| Cla03g00255 | 537 | PANTHER | HIGH-AFFINITY NITRATE TRANSPORTER 2.3 | 8 | 534 | IPR044772 | GO:0015112 | |
| Cla03g00255 | 537 | MobiDBLite | consensus disorder prediction | 497 | 520 | - | - | |
| Cla03g00255 | 537 | MobiDBLite | consensus disorder prediction | 497 | 537 | - | - | |
| Cla03g00255 | 537 | PANTHER | HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE | 8 | 534 | - | - | |
| Cla03g00255 | 537 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cla03g00255 | 537 | SUPERFAMILY | MFS general substrate transporter | 65 | 466 | IPR036259 | - | |
| Cla03g00255 | 537 | CDD | MFS_NRT2_like | 72 | 465 | IPR044772 | GO:0015112 | |
| Cla03g00255 | 537 | Gene3D | MFS general substrate transporter like domains | 65 | 261 | IPR036259 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g00255 | Cla-Chr3:3036860 | Cla05g02561 | Cla-Chr5:36898918 | 0 | dispersed | |
| Cla03g00254 | Cla-Chr3:3023963 | Cla03g00255 | Cla-Chr3:3036860 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g00255 | K02575 | - | csv:101218006 | 1046.57 |