Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00266 ATGGAGAAATCTGGATATGGTCGCGATGGAATTTTCAGGTCTTTACGGCCTCCGCTCGTCTTTCCTAAAGATCCCAATCTCTCGATGATCTCTTTCCTCTTCCGAAATTCGTGTTCTTATCCAAATAGACTAGCCATTGTGGATGCGGAATCTTCTGATTCTGTGTCGTATTCACAACTTAAAGCCTCTGCAATTAGGGTCTCCAATGGGTTGATCCAATTGGGTATCGAGAAAAACGACGTGGTGTTGATTTTTGCTCCAAATTCAGTTCAGTTTTCCGTTTGTTTCATTGGGATTATTGCTATTGGGGCTATTGTAACCACTTGTAATCCTGTCTACACGGTGTCTGAGCTAACCAAGCAAGTTAAAGATGCTAAACCCAAACTTGTGATATCTGTTGCTGAATTGTGGGACAAAGTGAAGGATCTAAACATCCCAACTGTGTTACTGGACCAGCAGATTCCTTCAGCAATTCACTCTTCCAAAATATTATGTTTCAATGATTTGATGAACATGGCTGGTGATAAATCTGGGTCTGAGTTCCCAATTGTTGGGGTGAAACAGAGTGACACAGCTGCACTTCTGTATTCATCAGGAACAACAGGAGCTAGTAAGGGTGTGATTCTGACTCATAGAAACTTCATAACGTCTTCATTGATGATTACAATGGATCAGACGTTTAGGGGAGAGGAACATGGCGTATATCTGAACTTCTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGCGCAGCTGCAGAAAGGAAACAGCATTGTCTCTATGCCAAAGTTTAACCTGGAGAAGGCCTTGTGGGCAGTGGAGAAGTACAAGGTGACAGATATGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTAGCAAAGCAGAGTGTGGTGAAGAAGTACAACCTTTCATCTGTGAAGCGTGTTGGTTCTGGGGCTGCACCTCTTGGGAAGGAATTAATGGAGGAATGTGCTAATAACATTCCCAGTGCTGTGGTTCTCCAGGGCTATGGTATGACTGAGACTTGTGGAGTCGTTGCTTTGGAGAATCCAGAAGTTGGCAAACGAAATTCTGGTTCAGCTGGAACACTTGCCTCTGGTGTGGAGGCTAAAATAGTCAGTGTAGATACTTTGAAGCCTCTACCTCCTAATCAATATGGAGAGATACATGTTCGGGGACCAAACATGATGCGGGGTTATTTCAACAATCCAGAAGCCACCAAGCAAACTATTGATAAATATGGCTGGGTGCATACTGGAGACCTTGGATACTTCGATGAAAATGGTCAGCTTTATGTTGTCGACCGAATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCTCCAGCTGAGCTTGAAGCACTGTTGGTTTCTCACCCTGAGATACTAGATGCTGTTGTCATCCCCTACCCCGATGCTGAAGCTGGAGAAGTTCCAATCGCATATGTTGTTCGATCTGCCAATAGTTCTTTGACCGAAGAGGACATCCTTAAATTCATTGCTGATCAGGTTTCTCCTTACAAAAGGTTAAGAAGAGTGACATTCATCAGCAGTGTTCCCAAGTCTGTTTCTGGGAAAATCCTCAGGAGAGAACTCATTGAAAAAAATGTGGCTCAACTTTCACTTTCTGAAAAAGTGCCGCTGAAGAGGAGAACACTGACACAGTTCTCGAGAGTGTCCTTTGAATATAAGTAG 1704 43.43 MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNSCSYPNRLAIVDAESSDSVSYSQLKASAIRVSNGLIQLGIEKNDVVLIFAPNSVQFSVCFIGIIAIGAIVTTCNPVYTVSELTKQVKDAKPKLVISVAELWDKVKDLNIPTVLLDQQIPSAIHSSKILCFNDLMNMAGDKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHRNFITSSLMITMDQTFRGEEHGVYLNFLPMFHVFGLACITYAQLQKGNSIVSMPKFNLEKALWAVEKYKVTDMWVVPPVVLALAKQSVVKKYNLSSVKRVGSGAAPLGKELMEECANNIPSAVVLQGYGMTETCGVVALENPEVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMMRGYFNNPEATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDAEAGEVPIAYVVRSANSSLTEEDILKFIADQVSPYKRLRRVTFISSVPKSVSGKILRRELIEKNVAQLSLSEKVPLKRRTLTQFSRVSFEYK 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3170022 3183154 - ClCG03G002760.2 Cla03g00266 268766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00266 567 CDD 4CL 21 535 - -
Cla03g00266 567 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Cla03g00266 567 Gene3D - 441 542 IPR045851 -
Cla03g00266 567 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 540 - -
Cla03g00266 567 SUPERFAMILY Acetyl-CoA synthetase-like 17 540 - -
Cla03g00266 567 Pfam AMP-binding enzyme 37 445 IPR000873 -
Cla03g00266 567 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Cla03g00266 567 Gene3D - 10 440 IPR042099 -
Cla03g00266 567 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00266 Cla-Chr3:3170022 Cla10g01908 Cla-Chr10:34963679 0 dispersed
Cla03g00266 Cla-Chr3:3170022 Cla09g00323 Cla-Chr9:3124225 7.78E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00266 K01904 - csv:101220141 1001.89