Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00278 ATGGAACATAGTTATGGTTTTGAACAGCATGTTGCTCAACAAAGTCGGCGCGATAAGTTAAGAGTTCCGCAGAATTATTTGCGAGTGGGGGAGTTAACAAGGAACTCTGATGAACAATTGAGCTTTCACAACTCCGAGCATTTGGGGCTTGATCTGGATCTTGTTAGAATTCAAAGTTATAACAAGGATGCGATTTTGACTCATGATCACTTGTCTTCGTTACCCTCAGAAATGATCAATTTCTCGAGAGATTCCAATGTTTTATCGCACCAAAGGGACATGATGTTGCGTCAAGAATTGGAAGACCCAGCTCAATCCAGTAGACAAATTGTGACAGATGCCTCTGGTGGAATTGTAAGTAATAGTGTTGATTATTGGAAAAGCTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCTTCCTCTTTTAATAATCCATCCAACGAGACATTCAATCAGGATGGACAAAAGCGTATAGGAGGAGAATTGCATTTGCCTCCAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCCTCCATTCGAACTCAGGGCCTGGAAATGGCATCCATTGTGCAGCATAATTTCACTGAAATTAACCAGACTGCTGCTTGTGAAGGCAGTGGGAATGAGCTTGCTCTTCTTCCAGTGTACAGGGATCAGTCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACTGATAGAACTTTCTATAATTGCCGCAGCTGGATTGGTGAATTGGGCTCTATTGCTAGAAAAACCGATGAAGAGTTAAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTATCCCTGTCGCTGTCTTCGAATCCCCCGTCTAAATTGCCCACCACACAGTTCGTAGAATCAGAGGAATTACAGGAAAGTATCACTGTGTTAAAAAATACCCAAGAATCCAAAACAGTCAAATCTGAGAATTTGTGTAGATTACCAAAGCCAACATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGATGTGATGGGAGTTCCTGTCAATCCATATAGAAACACAGGTCCTCTTGGTCCCTTTACTGGGTATGCAACCATTTTAAAGAGTTCAAAATTCTTAAAGCCTGCCCAACTGTTGTTAGATGAATTTTGTGGCTCAAGTGGTCATTATAAGTTTTTCCAACCATGTGAGGTATTTGAGAAGACACCTGGGGAAGTTGGTGTCTCAGCGGCCCTTAATGCATTTAGAAATGAGGCTGTTAAGGAAAATAGTTCGTGTGCAGATGCCTCTACATTCTGCGGTTCGAATGAATCAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTATATATGCTCGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTCGAATCAGTAGCTGGTCTTAGTTCTGCGACACCCTACATTTCCCTGGCACTCAAGACAGTCTCAAGACACTTCCGGTCTCTGAAGAATGCCATCTCGGAGCAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCCCCCTCTGCTGGGACAAGCGGCAGCAAAGGTGGTGATGCAAATTCGGTTAGGTTGAAATACATGGAACAGAGCTTCCAGAAGCAAAAATCTGGCATTGTCAATATTGGATTCCTTGAATCCCAAAATGCATGGAGGCCACAGAGAGGGTTGCCTGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGTCTATCTCGAAACCAGGTGTCAAATTGGTTCATAAATGCCCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACAACAAAAGCCATGGTATGAGAGATGGAAGTTCTACATTAGAGAAGACTGCCGGTTGGACCAGTAGTGAACGCCAGCCTCTAAAAAACCATGGTGTTACAAATGAAATGGCTAGTCATCATTTGCAGTGCTTTGGGGTAGATTCCTTAAGTGGCGACAGAAATGGACTCGGCTGCAGCGACCAACAGTGGGATCAAGGCAAACAATCCAAATTGGACAATGGGGTTCAGTCCAACATGGAAGGGGAACTGATGGGGTTCATGCCATATCAAGCCAGTGCAGCTGAGGTTGGAGGACTTGGAGCTGTCTCTCTAACATTAGGCCTTCGCCATCGAGTTGAGAGTGCCCACCATGAACAGGAGCGGCATCAAATGCAGCAACAAGATGACCAACTAATACGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGGAGCCCAAGTCGCTGTTCGAGGGTTCAGAAAGTTGAAACAGCTCTCGGCAATCTCTCCATATCTCAGATGAAAAAACCTGTTATTATGTTGCTTCTGAAAGAACAATACACTCTTTTGAAAAGAGCATTCTACAATGAGCAGAGACGCATTGGTGATAACTTCAGCGGCTATAATGAATATATTCTCTTCGGCTTTTCTGTAAGTCTCTGCTTTGTACTTTTCCATCTTTTCCAATGCTACTGCCTATGCCTGTGCCTCTTCCTGTCTGTCTCTTCCCTGCATGACTAA 2766 43.28 MEHSYGFEQHVAQQSRRDKLRVPQNYLRVGELTRNSDEQLSFHNSEHLGLDLDLVRIQSYNKDAILTHDHLSSLPSEMINFSRDSNVLSHQRDMMLRQELEDPAQSSRQIVTDASGGIVSNSVDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFQTSSSFNNPSNETFNQDGQKRIGGELHLPPIYQNTLQDVVTSASIRTQGLEMASIVQHNFTEINQTAACEGSGNELALLPVYRDQSNVLPYDSTGSWTDRTFYNCRSWIGELGSIARKTDEELRTFMSDSNPQGLSLSLSSNPPSKLPTTQFVESEELQESITVLKNTQESKTVKSENLCRLPKPTSIGNKNYGKSLQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSSGHYKFFQPCEVFEKTPGEVGVSAALNAFRNEAVKENSSCADASTFCGSNESNVSGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGGDANSVRLKYMEQSFQKQKSGIVNIGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGMRDGSSTLEKTAGWTSSERQPLKNHGVTNEMASHHLQCFGVDSLSGDRNGLGCSDQQWDQGKQSKLDNGVQSNMEGELMGFMPYQASAAEVGGLGAVSLTLGLRHRVESAHHEQERHQMQQQDDQLIRHYGSEMIHDFVGSPSRCSRVQKVETALGNLSISQMKKPVIMLLLKEQYTLLKRAFYNEQRRIGDNFSGYNEYILFGFSVSLCFVLFHLFQCYCLCLCLFLSVSSLHD 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3372212 3377789 + ClCG03G002870.2 Cla03g00278 268778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00278 921 MobiDBLite consensus disorder prediction 296 316 - -
Cla03g00278 921 Gene3D - 607 669 - -
Cla03g00278 921 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 793 - -
Cla03g00278 921 CDD homeodomain 604 665 IPR001356 GO:0003677
Cla03g00278 921 Pfam Homeobox KN domain 621 660 IPR008422 GO:0003677|GO:0006355
Cla03g00278 921 SMART HOX_1 604 668 IPR001356 GO:0003677
Cla03g00278 921 Pfam Associated with HOX 391 544 IPR006563 -
Cla03g00278 921 SUPERFAMILY Homeodomain-like 605 670 IPR009057 -
Cla03g00278 921 SMART prehox3 386 545 IPR006563 -
Cla03g00278 921 ProSiteProfiles 'Homeobox' domain profile. 601 664 IPR001356 GO:0003677
Cla03g00278 921 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 36 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00278 Cla-Chr3:3372212 Cla10g02042 Cla-Chr10:36169958 5.44E-71 dispersed
Cla03g00278 Cla-Chr3:3372212 Cla10g01741 Cla-Chr10:33296516 1.41E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60778 PF07526 POX 1.30E-42 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00278 - - csv:101214235 1481.46