Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00287 ATGCTGGTTACCTCTTCCCCTGACATTTTTTTTCTCTTACAGGCCAGGTATGGAGAAATGCTAAGGCGCTTTAGTGTTGGAGTCTATGACAACAGTAGACTGGATCTGGACATGAATGGGTTGAGAGCAAAAATACGTAATCTCTTCAACTTCTCTTCTGATGCTGACTTTACATTGACTTACATCGATGAAGATGGTGATGTTGTGTCCCTGGTCGATGATGATGATCTGCATGAAATGATGAGGCAACAGTTGAAGTTCTTGAGAATTGATGTGCATCTGAGAAATAAGGAAAATGAAAAATCTCATGATAGATCAGATGGAAGTTCTACCCTTATGACATCAGAACGTTCATTTCAAGATGTTTGTAGTGGTATCTCTGACGTTTTGAAATCTATGCCTGAGCCCTTACCTGAATTTTGTTCACAGTTCCTCCTTGACATTGCTTCAAAAGCTGTTAGTAGCCCTGTGCTTTCTGAGCTTGCTCAAAGCTTTATTCGGTTGGGAAACACACACCTGCACACAGGTTCTCAGGCCTCATCTGTTCCAGAGACGAGCACACAGAGTGTCGCCGCTGAGGGTTCTACGCCTCCTCTAGGTGCAGATTCAAAAGCTTCAAACAATGATGGCTTTCATCAAGAAGCTGGGTCAAAATTTCAATGCACTGGTTCTTCTTATAAAGATGGAAAGATAACTAACAGTGAGAGTGCGACAAAGAATATTGGTGTATCTACACCTGTTTTTGATCTTGATGCCCTTCCTGGGAAGCCAGCTATTGCCGACCATTGCTGCAGCTCTTTTGATGGAAAGAAGAAGGAAAAACACAATGATGCATTTCTTGATGCCCTCCAAGAAATGCATATAAGTAATCTTCCGGCATCGTTGATCGATAACTCACATCATTCATCCGCCACTTATATGGATGGTAGGTTTATTAACGAGTGCCCTTTTAGTGGAGTACCTGTGGCTCCTCGATCGTCTATGCTTGGAACTGTAGGTATAGATCCAGTAAGTAGCAGTAGTGGTTACACTGAATCTGTGGGAAGTATGTTCCATAAAGGTCCAATAGCCAGCAGCAGTGGCTATATTGAAGCATTCCATGAAGATCCAATAATTAGCAGCAGAGGTTGCTTTGGAACTGTGGGAAGTATGTTCCATAAAGGTGTTATTTGTGATGGATGTGGAGCCCGTCCAATAACTGGTCCGCGGTTCAAGTCCCAAGTGAAAGATAATTATGATCTCTGTAGCATCTGCTTTGCTAAAATGGGCAATGAGGCTGACTATATTAGGATCGATCGTCCTGTCTCTTGCCGGAATCCAAGAATGAAAGGATTCAACCGTAGATATCCATTTCCTGGCCCCCAAATAATCGATGCTTTGAGAGGTCCTGTAAAGCAGACCAAGCTTGATAGTTGCTTCGTAGCTGACGTTAATGTATTTGATGGCACTGTGATGGCTCCATGTATCCCATTTACCAAGATATGGCGATTGCGTAATAGTGGGACTTCGAATTGGCCCCGTGGTACACAGCTAGTGTGGATTGGAGGAGACAAGTTGGGTTGTTCAGTACCGGTTGAAATAGAGGTTCCTGCTGATGGACTTCCTCTGGGTCAGGAAATTGAAGTTGCAGTTGACTTTACTACCCCTCCACGTTCTGGTCAATACACCTCATACTGGAGGATGGCATCTCCATCTGGCCAGATATTTGGGCAACGTGTTTGGGTTCTTATTCAGGTTGATGAAGCACTTGGGATGCCGGATTCCAATTATTCCCAAGCTTTGGACTTAAATTTACCCCCCCTCATAGATCGTGCCCATGAAGGTGTACAAAAGAATTCAACTCCTGCAATTTCTGATGGTGTCCTTTTTCCTCCTCGCGATTCCATCCCCATCAATGAACTGCCAAAGCTTGATCATAATCTGTCTGCAACTGATCCGGATTTACAATTCCTCGTAGATCAGGATATTCTAGTTGGCGAAAGCCCTACTACTTTTGCTAAGGAGGATAATTTGGGCTCGTCTAGCTCTGCTGCTGATCGCCATGGAGTTCTACCTAGTTCAACCAAGGTTCCCCCAGAGCCATATTCTCCTTTTGATTTTCCTGTACCAACTCCACCTGCAAACCCGCCTCCAACACCATCCCCCAAGGTTTCGCCAGCATCATCTGAAGATGTCACTGCCAATAATGCCAATAACATTATTGAAGAAACTCTTCTTAAAACACTCGAGGATATGGGATTCAAACAGGTTGATCTAAACAAGGAAGTACTGAAGAGGAATAAGTACGATCTAGGGCAGTCGGTGGATGATCTCTGCAGAGTTGATGAATGGCATCCGATGCTTGATGAGTTGGAGGAAATGGGATTCAATGACAAGGAAATGAACAAAAGACTTCTGAAGAAGAACAATGGCAGCGTGAAGCGAGTAGTGATGGAACTTCTTTATGGGGAGAATGCTTAG 2460 43.9 MLVTSSPDIFFLLQARYGEMLRRFSVGVYDNSRLDLDMNGLRAKIRNLFNFSSDADFTLTYIDEDGDVVSLVDDDDLHEMMRQQLKFLRIDVHLRNKENEKSHDRSDGSSTLMTSERSFQDVCSGISDVLKSMPEPLPEFCSQFLLDIASKAVSSPVLSELAQSFIRLGNTHLHTGSQASSVPETSTQSVAAEGSTPPLGADSKASNNDGFHQEAGSKFQCTGSSYKDGKITNSESATKNIGVSTPVFDLDALPGKPAIADHCCSSFDGKKKEKHNDAFLDALQEMHISNLPASLIDNSHHSSATYMDGRFINECPFSGVPVAPRSSMLGTVGIDPVSSSSGYTESVGSMFHKGPIASSSGYIEAFHEDPIISSRGCFGTVGSMFHKGVICDGCGARPITGPRFKSQVKDNYDLCSICFAKMGNEADYIRIDRPVSCRNPRMKGFNRRYPFPGPQIIDALRGPVKQTKLDSCFVADVNVFDGTVMAPCIPFTKIWRLRNSGTSNWPRGTQLVWIGGDKLGCSVPVEIEVPADGLPLGQEIEVAVDFTTPPRSGQYTSYWRMASPSGQIFGQRVWVLIQVDEALGMPDSNYSQALDLNLPPLIDRAHEGVQKNSTPAISDGVLFPPRDSIPINELPKLDHNLSATDPDLQFLVDQDILVGESPTTFAKEDNLGSSSSAADRHGVLPSSTKVPPEPYSPFDFPVPTPPANPPPTPSPKVSPASSEDVTANNANNIIEETLLKTLEDMGFKQVDLNKEVLKRNKYDLGQSVDDLCRVDEWHPMLDELEEMGFNDKEMNKRLLKKNNGSVKRVVMELLYGENA 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3528175 3534027 + ClCG03G002990.1 Cla03g00287 268787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00287 819 Gene3D - 10 95 - -
Cla03g00287 819 SMART zz_5 385 430 IPR000433 GO:0008270
Cla03g00287 819 MobiDBLite consensus disorder prediction 665 724 - -
Cla03g00287 819 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 380 817 - -
Cla03g00287 819 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 13 207 - -
Cla03g00287 819 MobiDBLite consensus disorder prediction 690 717 - -
Cla03g00287 819 Gene3D Immunoglobulins 464 583 IPR013783 -
Cla03g00287 819 SUPERFAMILY UBA-like 777 814 IPR009060 GO:0005515
Cla03g00287 819 CDD UBA_NBR1 735 772 - -
Cla03g00287 819 PANTHER PROTEIN JOKA2 380 817 - -
Cla03g00287 819 PANTHER PROTEIN JOKA2 13 207 - -
Cla03g00287 819 Gene3D - 775 818 - -
Cla03g00287 819 SUPERFAMILY CAD & PB1 domains 5 87 - -
Cla03g00287 819 Pfam PB1 domain 14 90 IPR000270 GO:0005515
Cla03g00287 819 MobiDBLite consensus disorder prediction 666 682 - -
Cla03g00287 819 SUPERFAMILY RING/U-box 384 436 - -
Cla03g00287 819 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 773 816 IPR015940 -
Cla03g00287 819 ProSiteProfiles Zinc finger ZZ-type profile. 386 436 IPR000433 GO:0008270
Cla03g00287 819 Gene3D - 380 431 IPR043145 -
Cla03g00287 819 CDD NBR1_like 467 580 IPR032350 -
Cla03g00287 819 CDD UBA_NBR1 776 814 - -
Cla03g00287 819 SMART PB1_new 10 95 IPR000270 GO:0005515
Cla03g00287 819 Gene3D - 730 774 - -
Cla03g00287 819 Pfam Ig-like domain from next to BRCA1 gene 478 579 IPR032350 -
Cla03g00287 819 Pfam Zinc finger, ZZ type 386 421 IPR000433 GO:0008270
Cla03g00287 819 ProSiteProfiles PB1 domain profile. 10 95 IPR000270 GO:0005515
Cla03g00287 819 MobiDBLite consensus disorder prediction 175 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00287 K17987 NBR1; next to BRCA1 gene 1 protein - csv:101205935 1054.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01332 Cla-Chr1:26687302 Cla03g00287 Cla-Chr3:3528175 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00287 Cla_Chr03 FPKM 25.126051 26.814203 14.505641 13.801246 16.254734 18.924484 18.416735 1.892411 2.453165 2.426183