Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00289 ATGAGTGCTCCTATGGAGATTTCTTTACCAAACCCTCTCTTAGAAGCCCAGTTGTCTGAATCAAATGGCGTCATCTCCGAATCAGCTGCTTCTCCGATTGTAAATGAAGACAAAATTCTCGTTTCAGTCGAGGTGTGCTTAAAATCCTCCAGCACAGCGCGGATTGAAGATGTCCGGTTGGCCGTTGAGAGAATGCTTGAGAAGAGAAGTTTAAGCTATGTTGATGGGCCCATTCCAGTGCCGCTCGATGACGCTTTTCTCGCTGACAATGTGCAAGGAATCCGAATTTGCGACTCTGATGACGGTGTGCAAAACCATGATATCCTCTTATTCTGGCAAGTCAAACCTGTTGTTCATGTCTTTCAGCTTAGTGAAGAAGGACCCTGCGAGGAACTTGGTGGGGATGGGCAGATTTCTAGCTTTAATGAATGGATACTTCCTGCCAAGGAGTTTGACGGCATGTGGGAAAGTTTAATTTTTGAGTCTGGTCTCAAGCAAAGGCTTCTGCGATATGCTGCTAGTGCTTTGTTATTCACTGAAAAGGGTGTTGATCCATTCCTAGTGTCATGGAATCGGATTGTCCTATTACATGGACCTCCAGGGACCGGTAAGACCTCTTTATGCAAAGCACTGGCTCAAAAACTGTCAATAAGATATCTGTCAAGATACCCACACAGCGTACTCATTGAAGTTAATGCACATTCCCTTTTTAGCAAATGGTTTTCTGAAAGTGGCAAGTTGGTCGCAAAGCTATTCCAGAAGATTCAAGAGATGATAGAGGAAGAAGACAATCTGGTATTTGTTTTGATTGATGAAGTGGAAAGCTTAGCTGCTGCTAGAAAGGCTGCTTTGTCTGGTTCAGAACCTTCAGATTCCATTAGGGTCAGTAGCTTTGTAACTCAACTGATGCATATAAAACTCCGAACTGTAATATCACAGGTTGTCAATGCGCTACTTACACAGATAGACAAGTTGAAATCGTCACCAAATGTGGTGATTCTGACAACTTCCAATATAACAGCAGCTATTGATATTGCATTTGTAGATCGAGCAGATATCAAAGCATATGTTGGTCCACCAACTCTTCAAGCACGTTATGAAATTCTAAGGTCCTGCCTGCAAGAGCTTATACGCACTGGAATTTTGACAACTTCTGAGGGTTATGACCACTCTATGCTTCCTAACTATGCTGGTTTGAAAGAGAAAATAAGCATTTCAGAGACTGAGAAGGTTGATGTACCACTTCAAATCTGCAAACTATTGCTTAAGGTTGCTGAAGCATGCAAGGGTTCTAGTGGACGTTTTTTAAGAAAGCTCCCATTCTTAGCTCATGCAACTCTAGCCAATCCATGTACTGGTGACCCTTCAAAGTTCTTGTTCGCAATGTTGGAAGCGGCTAGGAGGGACCGAATAGAAAATATCTGCTTCTTCTGTCTGCTATCTCGGCATCTCGACATGTTTCTTGCTTTCAACAACACTTCAAGGACGAAGCCAATGAACATTCTTGCTGCTATAGAGATGCCACAGAGAGGTTTCTCTTTCTTGCAGTCTTTTGAAATGGGAAGCTTTGTTTTGGTGAATCAAGCTATGGAGTTCAATTTTTGGGCCGCAAGGGTTCATCCCACTGACCAACTTTCTGCTGTCCAAGCCGCCATGCTTCATTCTGGTAACCATATAATTCTGGATGACTCAGATGGAGAAGATGATTCACGAGCTTACTTTTCATGCCCTTACTGTTATTTGGATATCGAAGTTCCAGTTCTTTGTAGCCATTTGCAAGAAGAGCACTGCTTTGACTTCAGAAATGCAGTTTGTCCCCTATGTGCAGCCAGTCTAGGGAAAGATGTAATTGGGCATTTTACAGCACATCATTCAAGCTCAATAAAGAGGAGGAGAAAACCTGAGAAATCTGTCTCTTCTGCATTTAATTCCAAGAAGCTGATAACAAAGAGCAGGGAAAAAAGAAATGGATCTGCACCAGATCCCCTTCTACCCTTTATCTGCAGCATTCCTTTCTCAGACCCTGAATTTGTTGAGAGAGATGACCGTTCAGAAAACGCCTCCATTGCTACTAATATGGAAAGTCTGAACTGGATCGCTCTTGATATTGCCCAACCTTTCAAGTTTGCTCTACACCATGAAGATATCCACTTGCTTATGCATACCATTTCGATTCTCATTTGTCAACTGTGCGTTAGGGGATGTGATAGCTTAGCATATTAA 2223 42.6 MSAPMEISLPNPLLEAQLSESNGVISESAASPIVNEDKILVSVEVCLKSSSTARIEDVRLAVERMLEKRSLSYVDGPIPVPLDDAFLADNVQGIRICDSDDGVQNHDILLFWQVKPVVHVFQLSEEGPCEELGGDGQISSFNEWILPAKEFDGMWESLIFESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRYLSRYPHSVLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMIEEEDNLVFVLIDEVESLAAARKAALSGSEPSDSIRVSSFVTQLMHIKLRTVISQVVNALLTQIDKLKSSPNVVILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTTSEGYDHSMLPNYAGLKEKISISETEKVDVPLQICKLLLKVAEACKGSSGRFLRKLPFLAHATLANPCTGDPSKFLFAMLEAARRDRIENICFFCLLSRHLDMFLAFNNTSRTKPMNILAAIEMPQRGFSFLQSFEMGSFVLVNQAMEFNFWAARVHPTDQLSAVQAAMLHSGNHIILDDSDGEDDSRAYFSCPYCYLDIEVPVLCSHLQEEHCFDFRNAVCPLCAASLGKDVIGHFTAHHSSSIKRRRKPEKSVSSAFNSKKLITKSREKRNGSAPDPLLPFICSIPFSDPEFVERDDRSENASIATNMESLNWIALDIAQPFKFALHHEDIHLLMHTISILICQLCVRGCDSLAY 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3540049 3552343 + ClCG03G003010.2 Cla03g00289 268789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00289 740 SMART AAA_5 190 361 IPR003593 -
Cla03g00289 740 Pfam ATPase family associated with various cellular activities (AAA) 194 358 IPR003959 GO:0005524|GO:0016887
Cla03g00289 740 CDD AAA 192 359 - -
Cla03g00289 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 439 IPR027417 -
Cla03g00289 740 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 198 217 - -
Cla03g00289 740 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 678 697 - -
Cla03g00289 740 Gene3D - 139 376 IPR027417 -
Cla03g00289 740 Pfam Drought induced 19 protein (Di19), zinc-binding 573 625 IPR008598 -
Cla03g00289 740 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 314 471 IPR044539 -
Cla03g00289 740 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 34 306 IPR044539 -
Cla03g00289 740 ProSitePatterns AAA-protein family signature. 331 350 IPR003960 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00289 K22399 TRIP13; pachytene checkpoint protein 2 - csv:101207135 830.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00289 Cla-Chr3:3540049 Cla09g01555 Cla-Chr9:30753061 1.95E-08 dispersed
Cla03g00289 Cla-Chr3:3540049 Cla04g00912 Cla-Chr4:24108654 2.76E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g830 . . . . . . . . Cmo13g00891 . . . . . . Cpe20g00264 . . . . . . . . . . . . . . . . . Cone13ag0175 . Lsi02g00414 Csa01g00885 Chy12g01238 Cme12g01661 . . . . . . . . . . . Cma13g00860 . Car13g00702 . . . Bhi08g01662 Tan05g1968 Cmetu12g1001 Lac10g0493 Hepe07g2197 . . Cla03g00289 Cam03g0307 Cec03g0301 Cco03g0315 Clacu03g0308 Cmu03g0918 Cre03g0609 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012252 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00289 Cla_Chr03 FPKM 3.085158 3.778749 2.488434 2.088079 1.352899 0.0 0.0 0.0 0.79271 1.174308