Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00290 ATGTCTCAGGATTTGTCATTGGATCAAGACCTGGATGAATCTGATCCCGAGTTCGTCGAGATTGATCCTACTGGTCGATATGGAAGGTATAAAGAAATTTTGGGCAAAGGGGCATTCAAAAGGGTATTCAATCAAAGAAATTATAATTTCTGTATGTCTGCTGCGTTTTGGGATGGAATTTTTGTGAGAAATTGTGTTCTTGATCAAGATGTGGTATATAGATATCGGGCTTTTGATGAGTTGGAAGGGATTGAAGTAGCTTGGAATCAGGTTAAGGTAACGGATCTATTGCGAAACTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTTAAGACATTGAAGCACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAGAACATTAACTTCATTACTGAGATATTTACTTCAGGGACACTACGACAATATAGAAAGAAACACAAGCATGTTGATTTGAGAGCATTGAAAAAGTGGTCCAGGCAGATATTAGAGGGCCTTCTATATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTAAATGGCAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCCGCCATTCTTCAACAAGCTCGTTCAGCCCACAGTGTCATTGGGACACCCGAATTTATGGCTCCGGAGCTGTATGAGGAGGAATACAATGAGCTTGTGGATATTTATGCCTTTGGAATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATATTGAATGTGCAAATGCTGCTCAAATCTATAAGAAGGTCACATCAGGGATTAAGCCAGCTTCATTGGCAAAAGTCACTGATTTAGGAGTGAAAGCATTTATAGAAAAATGTATTGCAAATGTCTCTGATCGTTTACCTGCAAAAGATCTTTTAAAAGATCCATTTCTCCAAGCTGATGATGATCATGAAAGTGCATCTCGTCATTTACAATCAAAGACCCTTCATGCAGGAAAAAGAGAACAAATTGATTTTGATCGAAGTGTAGATGATACTTCTGTTGAGACAAGCAGAGATTTCAGTATGCATGGCGAGAGGAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCTGATTCCATGGGTAATTATCGCAATATCCATTTCCCATTTGATATTGAAGCCGACACAGCAATTTCTGTTGCTAGTGAAATGGTAGAGGAGTTAGACCTTTCTGATCAAGATGTCTCCACAATTTCGGAAATGATTGAAACAGAAATTCGATCTTACATTCCAGATTGGATATCAGTTGAGTACTCTGGAGATAATGTAGGTGCTGATGTTGCAATTTCTGATAGCTCTCCTTCTGAAACAAGGAATGCTGCCTCTCCATTGTCTATGGAATCTGGTAATCTTGCATTAGAGGTTATGCCTTCAGGTCGCAAGTATTGGTCAGACTCTCCAAAGGGAATTGGTGGATGTTCTCCTATTAAGCCAGGTCCTTCAAACTTGTCTTTTACCTTAGATCAAAATGTTGAATCCTCCAACACCCCCATACATGGGGACAATCTAGACCATGCTGCCATAATTAAGGGATTGGAAAGTGAGCTTTTGTTAGAGGGCGGTGATCATGATGGACAGGATGAGGATAAATCAACTACAAATATTCATGCTAGCTCTGAAGCACATCTTTTAGAAGAGAACAATTATGATGAATCAGTTGACCTTGAAATAATAGCTGAGAAACTTGAAATTTTGTTGACACAACAACAGAAAGAATTAGATGAACTAAAGAAAAAGCATAAATTAGCTATTTCAGAACTTTTGACTAAACTTGCACCTGAGTCCTATCAGAAGGTTATAGAGATGTGTCAGCTAAAACCTGATTTTGAGTTGGTTCTTTGA 1911 37.99 MSQDLSLDQDLDESDPEFVEIDPTGRYGRYKEILGKGAFKRVFNQRNYNFCMSAAFWDGIFVRNCVLDQDVVYRYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDLGVKAFIEKCIANVSDRLPAKDLLKDPFLQADDDHESASRHLQSKTLHAGKREQIDFDRSVDDTSVETSRDFSMHGERKDVNKIFLKLRIADSMGNYRNIHFPFDIEADTAISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWISVEYSGDNVGADVAISDSSPSETRNAASPLSMESGNLALEVMPSGRKYWSDSPKGIGGCSPIKPGPSNLSFTLDQNVESSNTPIHGDNLDHAAIIKGLESELLLEGGDHDGQDEDKSTTNIHASSEAHLLEENNYDESVDLEIIAEKLEILLTQQQKELDELKKKHKLAISELLTKLAPESYQKVIEMCQLKPDFELVL 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3553417 3557742 - ClCG03G003030.1 Cla03g00290 268790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00290 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Cla03g00290 636 Gene3D Transferase(Phosphotransferase) domain 1 143 325 - -
Cla03g00290 636 Coils Coil 582 609 - -
Cla03g00290 636 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 69 633 - -
Cla03g00290 636 Pfam Protein kinase domain 75 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00290 636 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 45 - -
Cla03g00290 636 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 375 429 IPR024678 GO:0004674|GO:0005524
Cla03g00290 636 SUPERFAMILY Protein kinase-like (PK-like) 34 319 IPR011009 -
Cla03g00290 636 SMART serkin_6 28 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00290 636 CDD STKc_WNK 26 318 - -
Cla03g00290 636 ProSiteProfiles Protein kinase domain profile. 28 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00290 636 Gene3D Phosphorylase Kinase; domain 1 12 141 - -
Cla03g00290 636 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 69 633 - -
Cla03g00290 636 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 8 45 - -
Cla03g00290 636 Gene3D - 371 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00290 Cla-Chr3:3553417 Cla06g00905 Cla-Chr6:14489112 4.35E-165 dispersed
Cla03g00290 Cla-Chr3:3553417 Cla06g00582 Cla-Chr6:7111152 5.25E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80409 PF00069 Pkinase 6.50E-45 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00290 K08867 - csv:101206177 1053.12