Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00297 ATGAAAATCACACAAAACCATACCCTCAGGAAAGAGAGAGAGAGAGTAATGGATCCAACATCCCACAAAAATCTCCACCAACTTCTACAACAAATTACTCAATCTCCATATGGAGGCACCATTATTCACTTCAATCCCATCTCTTTTCCTCTCATCTTCCTCTTCCTCTTCCTCTTCTTCCTACTTTCACTCAAACTCTTATCCACCAAAAATCCCAAAACTACCTTACCACCATCACCACCACAACTCCCAATAATTGGCAACCTTCACCAACTAGGCAGCCTCCCACACCGTTCATTGGCATCTCTTTCAGAGAAATATGGGCCTCTAATGCTCCTCAAACTAGGCCAAACCCCAACTCTCATAGTCTCATCAGCAAAACTAGCTAAAGAAGTAATGAAATCCCATGACACCATCTTCTCAAACAGAGCCCAAAACACAGCTGCAAAATCCTTACTCTATGGATGCCATGATGTGGCCTTTGCTTCCTATGGAGAGTACTGGAGACAAGCCAGAAAATTGTGTGTTTTGGAGCTTTTAAGCGCCAAAAGAGTTGAGTCTTTCCAACATATTAGAGATGAAGAAGTTGAAAAGCTTGTGAAAAGGATTGGTGAGGATTATTCATCTTGTGTGATCAATCTCAACCAACTTTTGATATCAACTTCAAACAATATAGTGGGGAGATGCGTTTTAGGAGAGAAGTTTAAGAGTGGAAATGATGGATTTGGAGAAGTGACAAGGAAGGCAATGGTGCTGTTGTCGGCGTTCTGTGTTGGGGATGCTTTTCCTTGGCTTGGATGGATTGATGTGTTGAGAGGATTTCATGAACAACTCAAAGCCACTTTTGGATCATTGGATAGACTTTTTGTGAAAGTGATTGAAGAACATAGGGAAAAAGTGAAGAGTGGTGATAATAATGCATCTTGTGAGAAGGATTTTGTGGGGATTATGCTAAAGTTGCAACAACAAGACAGTCTCGATCATCGTTTCACCATGGAAGATTTCAAAGCAATTTTACTGGATATGTTCGTAGGTGGAACCGACACAACAGCAACAGGTTTGGAATGGACAATGGTAGAACTGATGAGAAATCCAACAGCCATGAGAAAAGTTCAAGAAGAGGTCAGAGCAATAGTTGGAAAAAAAGCAAAGATTGAAACAAACGACACTCAGAAAATGGAGTACATGAAATGTGTTATAAAAGAATCTCTAAGACTCCATCCACCAGTTCCTCTATTGCTGCCAAGGGAAACAATGGAAAGTGTCAACCTTGAAGGCTACCAAATTCCATCCAAAACCAAGGTTTGGATCAATGCTTGGGCAATTCAAAGAGACCCCAAATTTTGGGAACGTCCAAACCAATTCATCCCAGAGAGATTCATGCAGGAAAAGAGATCAGTTGATTTCAAAGGCCATGACTTTGAGTTCATTCCATTTGGGAGTGGAAGAAGGAAGTGCATTGGAATGTCATTTGGGATTGCTTCTTTTGAATATGGATTGGCCAATCTTCTTTATTGGTTTGATTGGAAGCTTCCAGATGGGGAGTTGTTGGATATGACTGAACAACATGGGCTCTCTGTTTTCAAGAAACTTCCTCTCAATCTTATCCCAATTCCATATTGTGTGTAA 1629 40.76 MKITQNHTLRKERERVMDPTSHKNLHQLLQQITQSPYGGTIIHFNPISFPLIFLFLFLFFLLSLKLLSTKNPKTTLPPSPPQLPIIGNLHQLGSLPHRSLASLSEKYGPLMLLKLGQTPTLIVSSAKLAKEVMKSHDTIFSNRAQNTAAKSLLYGCHDVAFASYGEYWRQARKLCVLELLSAKRVESFQHIRDEEVEKLVKRIGEDYSSCVINLNQLLISTSNNIVGRCVLGEKFKSGNDGFGEVTRKAMVLLSAFCVGDAFPWLGWIDVLRGFHEQLKATFGSLDRLFVKVIEEHREKVKSGDNNASCEKDFVGIMLKLQQQDSLDHRFTMEDFKAILLDMFVGGTDTTATGLEWTMVELMRNPTAMRKVQEEVRAIVGKKAKIETNDTQKMEYMKCVIKESLRLHPPVPLLLPRETMESVNLEGYQIPSKTKVWINAWAIQRDPKFWERPNQFIPERFMQEKRSVDFKGHDFEFIPFGSGRRKCIGMSFGIASFEYGLANLLYWFDWKLPDGELLDMTEQHGLSVFKKLPLNLIPIPYCV 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3652409 3656040 - ClCG03G003130.2 Cla03g00297 268797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00297 542 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 52 539 - -
Cla03g00297 542 Pfam Cytochrome P450 77 530 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 479 488 IPR017972 GO:0005506|GO:0016705
Cla03g00297 542 PANTHER CYTOCHROME P450 71B11-RELATED 52 539 - -
Cla03g00297 542 Gene3D Cytochrome P450 64 534 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS E-class P450 group I signature 104 123 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS E-class P450 group I signature 486 509 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS E-class P450 group I signature 128 149 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS E-class P450 group I signature 476 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS E-class P450 group I signature 438 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS E-class P450 group I signature 221 239 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS E-class P450 group I signature 334 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS E-class P450 group I signature 354 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS E-class P450 group I signature 397 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS P450 superfamily signature 486 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS P450 superfamily signature 345 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS P450 superfamily signature 398 409 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 PRINTS P450 superfamily signature 477 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00297 542 SUPERFAMILY Cytochrome P450 77 539 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00297 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101208836 805.823
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla03g00297 Cla06g01705 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00295 Cla-Chr3:3592435 Cla03g00297 Cla-Chr3:3652409 2.06E-139 dispersed
Cla03g00297 Cla-Chr3:3652409 Cla03g00299 Cla-Chr3:3667884 3.45E-146 dispersed
Cla03g00296 Cla-Chr3:3619003 Cla03g00297 Cla-Chr3:3652409 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g851 . . . Bda15g00535 . . . . Cmo13g00794 Cmo18g00165 . . . . . . . Bhi02g00597 . . . . . . Cla06g01705 . . . . . . . . . . Lsi02g00426 Csa01g00905 Chy12g01223 Cme12g01649 Blo13g00153 Blo15g00247 . . Bpe07g00863 . . . . Cmo10g00092 . Cma13g00766 . . . . . . . . . . . . Cla03g00297 . . . . . . . . Chy02g02614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00297 Cla_Chr03 FPKM 279.035858 300.218781 0.0 0.0 0.0 0.18303 0.0 0.0 0.0 0.0