Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00302 ATGTTCTTCCTTCCATGTCTCGATGAATCCCTCGCCTCATTTTCCACATTCATCTTCTTCATTTCTCTTTTTGTTCTCCTTCTAATCCCCAAACTCAAATCAAAAACCAAGAAGATATCCCTCAACCTCCCTCCATCCCCACCAAAACTTCCTCTAATCGGCAACCTCCACCAGCTAAACCACCATCCCCACCTCTGTTTCCGCCGCCTCTCCCACAAATATGGCCCCATCTTCCTCCTTCAACTCGGTCAAATCCCAACCCTCATAATCTCATCTCCAAAAATCGCTAAAGAAGCCTTCAAAACCCACGATCTCTCCTTCTCAACCCGCCCCTTCCTCTTCTCCGCCCAACATATATTCTACAACTGCACTGAAATTGCCTTTTCCCCTTACGGCTCTTACTGGCGCCAAATAAGAAAGATATGCGTTCTCGAACTCCTTAGCACCAAAAGGGTCCAATCCTTTGCCCATATTCGACAACAAGAAGTTGCCCGTTTGGTTAACAGAATCTCCCAGTCCAACAATCTGGTCGATTTGTCGAACTTGTTAGCCTTGTATGGTAATGACGTGCTCTGTCGAACGGCGCTAGGGAGGGAATTTTCCGCCGGTGGTGAGTACCATCTTCATGGGATTCAAGAGCTGCTTGAAGAGTGTCAGATTTTGCTTGGTGGGTTCTGTTTTGGGGATTTGTTCCCTTCGTTGTCGTTTCTTAGTACGCTATCAGGGATGAAATCGAGGCTTGTGAGGACGTTTAAAAGGTTCGATAAGTTGATAGATCAAGTCATAGCTGAACATCTCAGTCCCGAGCGAGAGAAACTTGGAGAATCTAAGGATCTTGTTGATGTTTTGCTTGATATACAAAAGAATGGTTCTGATGATGAATTTCCCCTCACTATGGATAATGTTAAGGGCATTATTTTGGGACAGACAGAGTCCGCATGTGCGTTGACTTTCGTGACCTCAACAAAGCCGTTTATAGTTCTTGATTGGGGGATGACTGAGCTCATAACACACCCAAAGGCCATGGAAAGAGCACAAAACGAAATTCGAAGCATTGTTGGTGACAGAAGAGTTGTATCAGAGAGTGATATTTTAGAAATGCCCTACTTGAAAGCTGTGGTTAAAGAGGTGCTTCGATTGCATCCACCAGCGCCGGTTTCACTTCCAAGAGAAACTATGGAAGATGTGAGGATTGAAGGCCATGATATTCCAGCCAAAACGAGAGTTTTTGTGAATGTTTGGGCAACTGGGAGAGACCCAGAATGTTGGAAGGACCCAGAAAGTTTTGAGCCAGAGAGATTTATGGAGAGTGAAGTTGATTACAGAGGGTTGGATTTTGAGTTCATTCCGTTTGGGGTTGGAAGAAGGATTTGTCCAGGTATTACTATGGGGATCGTCATGATTGAGCTTGCTTTGGCTCAGATATTGCATAGCTTTGATTGGGAGCTTCCAAGTGGGATTGAAGCTAAAGATTTGGATATGACGGAAGTTTTTGGTGTCACAATGCATAGAAAAGCTCACTTGGAGGTTGAAATTTTACTCTCCAAACAAAGGAGAGCTACACTTCTTGTTTGCATCCTTGGAGAGGACATGATGATCGCCAGAGTTGATAGTCATTATTGGGCTTCGTTGCCAATTATAGAGGTCATCAAAGGAGACGGTTGCCGAAAGTTTCATGGGAGTAGGTTGTCGATGGTGGCAGCCATGGCAACATGGTGA 1719 44.79 MFFLPCLDESLASFSTFIFFISLFVLLLIPKLKSKTKKISLNLPPSPPKLPLIGNLHQLNHHPHLCFRRLSHKYGPIFLLQLGQIPTLIISSPKIAKEAFKTHDLSFSTRPFLFSAQHIFYNCTEIAFSPYGSYWRQIRKICVLELLSTKRVQSFAHIRQQEVARLVNRISQSNNLVDLSNLLALYGNDVLCRTALGREFSAGGEYHLHGIQELLEECQILLGGFCFGDLFPSLSFLSTLSGMKSRLVRTFKRFDKLIDQVIAEHLSPEREKLGESKDLVDVLLDIQKNGSDDEFPLTMDNVKGIILGQTESACALTFVTSTKPFIVLDWGMTELITHPKAMERAQNEIRSIVGDRRVVSESDILEMPYLKAVVKEVLRLHPPAPVSLPRETMEDVRIEGHDIPAKTRVFVNVWATGRDPECWKDPESFEPERFMESEVDYRGLDFEFIPFGVGRRICPGITMGIVMIELALAQILHSFDWELPSGIEAKDLDMTEVFGVTMHRKAHLEVEILLSKQRRATLLVCILGEDMMIARVDSHYWASLPIIEVIKGDGCRKFHGSRLSMVAAMATW 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3686486 3689400 + ClCG03G003180.1 Cla03g00302 268802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00302 572 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 13 510 - -
Cla03g00302 572 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Cla03g00302 572 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 PRINTS P450 superfamily signature 337 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 Pfam Cytochrome P450 44 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 13 510 - -
Cla03g00302 572 SUPERFAMILY Cytochrome P450 44 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00302 572 Gene3D Cytochrome P450 29 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00302 - - - csv:101209244 794.653
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00299 Cla-Chr3:3667884 Cla03g00302 Cla-Chr3:3686486 0 dispersed
Cla03g00302 Cla-Chr3:3686486 Cla03g00296 Cla-Chr3:3619003 4.13E-118 dispersed
Cla03g00300 Cla-Chr3:3671443 Cla03g00302 Cla-Chr3:3686486 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g861 . . Bda06g00623 Bda15g00532 . . . Bma12g01061 . Cmo18g00175 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0183 . Lsi02g00436 Csa01g00909 Chy12g01217 Cme12g01643 Blo13g00154 Blo15g00245 . . . . . . . . . . . . . . . Bhi08g01683 . . . Hepe07g2179 . . Cla03g00302 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002472 0 1 0 1 0 4 0 3 2 3 3 4 0 3 2 0 4 4 0 3 5 3 2 2 1 3 1 2 1 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00302 Cla_Chr03 FPKM 1.388137 1.761966 1.641744 1.242077 2.108385 1.631625 2.03541 0.310761 0.449105 0.382135