Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00313 ATGGAATCCACTCCTCTCACCACCTCCGTCCCTCCCACCGCCCTTCCCGACGACCTCTACTGCAACTTCCCGGCCACTCTAGCCTCCGATGACTCCGCCGCCCCCACCATTACCCCCTCTATATTCAGGGAACTTCCAGAACCCGACGTCCATATCCTCGCCTCTGGCGGACTCCGAATCCCCGCCCATTCCGGCATCCTGGCTTCGATTTCGCCGGTTCTTGAACATTTAATTGATCGACCGCGGAAGAAACGAAACGCCGAGAAAGTTATTTCTATCCTTGGAGTTCCTTCAGATGCTGTCGTTGCGTTCGTTCGGTTCCTCTACAGTTCTAGGTGTACGGCGGAGCATCTTGAGAAGCACGGAATTCATCTACTGGCTCTGTCGCATGTTTACATGGTGCCGCAATTGAAAGCGATGTCTACGAAAGATCTGGCTCAACGACTTACGATTGAAAGCGTTGTGGACGTTCTGCAACTCGCAAGGCTCTGCAACGCGCCAGATCTTTACCTGAAGTGTATGAAATTCATCGCTGATCATTTTAAATTCGTTGAGAAAACTGAAGGATGGAAGTTTATTCAAGATCATGATCCTTGGCTTGAGCTTGATATTCTTCAGTACATCGACGAGACCGAATCGAGGAAACAGAGGAATCGGAGGATAAGAAAAGAGAGAAAATTATATCTAGAGCTACACGAAGCAATGGAGTGTTTAGAACACATATGTTCAGAAGGGTGCACCATAGTTGGACCTTACAACGTGGAACCAAAGAAGGAAAGAGAACCCTGTAGCCACTACTCCACGTGTCACGGTCTCCAGCTTCTGATCAAACACTTCGCCACATGTAAGAAGCGAACCAACGGCGTAGGATGTGGGCGGTGCAAGCGCATGTGGCAGCTCCTCAAGCTTCACTCCTCCATCTGCGACCACTCCGAGTGTTGCAAAGTCCCTCTCTGCCGGAAATTCAAACAGAGGTCGTCGCCTTCGGACGACGTCAACAAACGGAAGGACGACGCACAGTGGAAAATGCTTGTCCGAAAAGTGGTTTCCGCAAAAGCAATTTCATCTCTGTCTTTGACCAATAAGAAGCTGTCGGATCTGGAGGATGATAGAGTGATTGCTCACCGTGGGATTGGGAGCTTTAGATTACAGTCGGTACTTATGGTTGTGTATGTGTGTGTTTCTGGGATTGGGGTGGTGAAAACTGGAAACAGGGGAATGTATGAAGTTGGACCTTACAACGTGGAACCAAAGAAGGAAAGAGAACCCTGTAGCCACTACTCCACGTGTCACGGTCTCCAGCTTCTGATCAAACACTTCGCCACATGTAAGAAGCGAACCAACGGCGTAGGATGTGGGCGGTGCAAGCGCATGTGGCAGCTCCTCAAGCTTCACTCCTCCATCTGCGACCACTCCGAGTGTTGCAAAGTCCCTCTCTGCCGGAAATTCAAACAGAGGTCGTCGCCTTCGGACGACGTCAACAAACGGAAGGACGACGCACAGTGGAAAATGCTTGTCCGAAAAGTGGTTTCCGCAAAAGCAATTTCATCTCTGTCTTTGACCAATAAGAAGCTGTCGGATCTGGAGGATGATAGAGTGATTGCTCACCGTGGGATTGGGAGCTTTAGATTACAGTCGGTTCGACGGTACAGATCATGA 1659 49.91 MESTPLTTSVPPTALPDDLYCNFPATLASDDSAAPTITPSIFRELPEPDVHILASGGLRIPAHSGILASISPVLEHLIDRPRKKRNAEKVISILGVPSDAVVAFVRFLYSSRCTAEHLEKHGIHLLALSHVYMVPQLKAMSTKDLAQRLTIESVVDVLQLARLCNAPDLYLKCMKFIADHFKFVEKTEGWKFIQDHDPWLELDILQYIDETESRKQRNRRIRKERKLYLELHEAMECLEHICSEGCTIVGPYNVEPKKEREPCSHYSTCHGLQLLIKHFATCKKRTNGVGCGRCKRMWQLLKLHSSICDHSECCKVPLCRKFKQRSSPSDDVNKRKDDAQWKMLVRKVVSAKAISSLSLTNKKLSDLEDDRVIAHRGIGSFRLQSVLMVVYVCVSGIGVVKTGNRGMYEVGPYNVEPKKEREPCSHYSTCHGLQLLIKHFATCKKRTNGVGCGRCKRMWQLLKLHSSICDHSECCKVPLCRKFKQRSSPSDDVNKRKDDAQWKMLVRKVVSAKAISSLSLTNKKLSDLEDDRVIAHRGIGSFRLQSVRRYRS 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3746140 3750800 - ClCG03G003310.1 Cla03g00313 268813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00313 552 SMART BTB_4 48 149 IPR000210 GO:0005515
Cla03g00313 552 Gene3D TAZ domain 405 512 IPR035898 -
Cla03g00313 552 Gene3D TAZ domain 223 351 IPR035898 -
Cla03g00313 552 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 2 405 528 - -
Cla03g00313 552 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 2 38 367 - -
Cla03g00313 552 SUPERFAMILY POZ domain 49 179 IPR011333 -
Cla03g00313 552 SMART TAZ_2 225 320 IPR000197 -
Cla03g00313 552 SMART TAZ_2 416 481 IPR000197 -
Cla03g00313 552 Gene3D Potassium Channel Kv1.1; Chain A 41 147 IPR011333 -
Cla03g00313 552 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 405 528 IPR044513 -
Cla03g00313 552 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 38 367 IPR044513 -
Cla03g00313 552 Pfam TAZ zinc finger 232 319 IPR000197 -
Cla03g00313 552 Pfam TAZ zinc finger 420 480 IPR000197 -
Cla03g00313 552 SUPERFAMILY TAZ domain 422 485 IPR035898 -
Cla03g00313 552 Pfam BTB/POZ domain 48 147 IPR000210 GO:0005515
Cla03g00313 552 ProSiteProfiles BTB domain profile. 48 117 IPR000210 GO:0005515
Cla03g00313 552 CDD BACK 150 191 - -
Cla03g00313 552 Gene3D - 149 222 - -
Cla03g00313 552 SUPERFAMILY TAZ domain 223 324 IPR035898 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00313 - - - csv:101209491 736.873
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01711 Cla-Chr1:32047729 Cla03g00313 Cla-Chr3:3746140 5.29E-27 dispersed
Cla03g00313 Cla-Chr3:3746140 Cla04g01216 Cla-Chr4:27299807 4.30E-28 dispersed
Cla03g00313 Cla-Chr3:3746140 Cla06g00536 Cla-Chr6:6437417 2.62E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g876 . . Bda06g00628 Bda15g00529 Bpe12g00680 . Bma06g00237 Bma12g01066 Cmo13g00798 Cmo18g00179 . . . . . Cpe20g00340 . . . . . . . . . . . . . . . . . Cone13ag0191 Cone19ag0186 Lsi02g00455 Csa01g00912 Chy12g01212 Cme12g02054 . Blo15g00240 Bda11g01631 . Bpe07g00869 . . Bma08g00073 Sed08g2470 . . Cma13g00769 Cma18g00203 Car13g00983 Car18g00197 Cpe09g00993 . Bhi08g01684 Tan05g2884 Cmetu12g0322 Lac10g0529 Hepe07g2171 . . Cla03g00313 Cam03g0332 Cec03g0323 Cco03g0336 Clacu03g0333 Cmu03g0939 Cre03g0633 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001511 3 2 1 3 2 2 4 2 2 2 2 2 3 2 2 5 2 2 4 2 2 2 2 2 2 2 2 5 3 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60779 PF00651 BTB 1.30E-09 CL0033 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00313 Cla_Chr03 FPKM 17.459183 24.453993 11.989581 12.680266 15.715358 15.700132 15.029573 13.75125 22.496216 22.894621