Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00314 | ATGGCACCGCCTACAGTCCCTCTCTCTCTCCTCTCCCTCTTCCTCTTCTCCGTCTCTCTATCCGCCGCTCTCTCCGCTGCCCCTGCCGCCGTTCCCAACCCTGAACTCGTCGTACAAGAAGTACACAGAAGCATAATCAATGCGACGAAGAGGAGGAATTTAGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATCCCAATTGGGAGAAAAATCGTCAGAGACTAGCCGACTGTGGGATTGGATTCGGCAAAAACGCCATTGGCGGTCGCGACGGCCAAATCTACGTCGTCACTGACTCCGGCGACGATGATCCAGTTAACCCTAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGATGAACCCCTCTGGATCATCTTCGCTCGCGATATGGTGATTCGATTGAAAGAAGAACTGATTATGAATTCCTTCAAAACCATCGACGGCCGTGGCGCTAGCGTCCATATCGCCGGTGGGCCTTGCATTACCATTCAGTACGTGACAAACATTATAATCCATGGTCTCAACATTCACGACTGTAAGCCAGGGGGAAACACGGACGTGAGAGATTCCCCTCGACATTTCGGATTCAGAACCATATCGGACGGGGACGGCGTTTCGATCTTCGGCGGCAGCCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGTAACGATGGATTGATCGACGCCATTCATGGGTCTACTGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAATATGCAAGTTACCATTGCTTTCAACCATTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAACGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACTATCAACAGTCAAGGGAACAGATTTGTTGCACCGGATGACAGATTCAGCAAAGAGGTGACAAAATATGAGGATGCACCGGAGAGTGAGTGGAAGAATTGGCATTGGAGATCAGAAGGAGATCTGATGCTAAACGGTGCATTTTTCACTGCCTCCGGCGCCGGAGCGTCGTCAAGTTACGCTAGAGCATCGAGTTTAGGGGCGAGACCGTCGTCGCTCGTCGGTACAATTACAACAAATGCGGGTGCACTGAACTGCAGGAAGGGCTCCCGCTGCTGA | 1236 | 50.08 | MAPPTVPLSLLSLFLFSVSLSAALSAAPAAVPNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPDDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3763924 | 3766384 | - | ClCG03G003320.1 | Cla03g00314 | 268814 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00314 | 411 | Pfam | Pectate lyase | 147 | 328 | IPR002022 | - | |
Cla03g00314 | 411 | SUPERFAMILY | Pectin lyase-like | 38 | 406 | IPR011050 | - | |
Cla03g00314 | 411 | PANTHER | PECTATE LYASE | 13 | 408 | - | - | |
Cla03g00314 | 411 | SMART | amb_all | 137 | 334 | IPR002022 | - | |
Cla03g00314 | 411 | PANTHER | PECTATE LYASE 18-RELATED | 13 | 408 | IPR045032 | GO:0030570 | |
Cla03g00314 | 411 | Gene3D | - | 62 | 404 | IPR012334 | - | |
Cla03g00314 | 411 | PRINTS | Pollen allergen Amb family signature | 85 | 102 | IPR018082 | - | |
Cla03g00314 | 411 | PRINTS | Pollen allergen Amb family signature | 109 | 134 | IPR018082 | - | |
Cla03g00314 | 411 | PRINTS | Pollen allergen Amb family signature | 145 | 161 | IPR018082 | - | |
Cla03g00314 | 411 | PRINTS | Pollen allergen Amb family signature | 209 | 230 | IPR018082 | - | |
Cla03g00314 | 411 | PRINTS | Pollen allergen Amb family signature | 289 | 308 | IPR018082 | - | |
Cla03g00314 | 411 | PRINTS | Pollen allergen Amb family signature | 311 | 330 | IPR018082 | - | |
Cla03g00314 | 411 | PRINTS | Pollen allergen Amb family signature | 353 | 377 | IPR018082 | - | |
Cla03g00314 | 411 | PRINTS | Pollen allergen Amb family signature | 382 | 405 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02123 | Cla-Chr1:35485956 | Cla03g00314 | Cla-Chr3:3763924 | 2.49E-150 | dispersed | |
Cla03g00314 | Cla-Chr3:3763924 | Cla09g01903 | Cla-Chr9:36705078 | 0 | dispersed | |
Cla03g00423 | Cla-Chr3:4856036 | Cla03g00314 | Cla-Chr3:3763924 | 1.30E-150 | dispersed | |
Cla03g00314 | Cla-Chr3:3763924 | Cla05g00372 | Cla-Chr5:3399550 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00314 | K01728 | - | csv:101209736 | 778.859 |