Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00314 ATGGCACCGCCTACAGTCCCTCTCTCTCTCCTCTCCCTCTTCCTCTTCTCCGTCTCTCTATCCGCCGCTCTCTCCGCTGCCCCTGCCGCCGTTCCCAACCCTGAACTCGTCGTACAAGAAGTACACAGAAGCATAATCAATGCGACGAAGAGGAGGAATTTAGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATCCCAATTGGGAGAAAAATCGTCAGAGACTAGCCGACTGTGGGATTGGATTCGGCAAAAACGCCATTGGCGGTCGCGACGGCCAAATCTACGTCGTCACTGACTCCGGCGACGATGATCCAGTTAACCCTAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGATGAACCCCTCTGGATCATCTTCGCTCGCGATATGGTGATTCGATTGAAAGAAGAACTGATTATGAATTCCTTCAAAACCATCGACGGCCGTGGCGCTAGCGTCCATATCGCCGGTGGGCCTTGCATTACCATTCAGTACGTGACAAACATTATAATCCATGGTCTCAACATTCACGACTGTAAGCCAGGGGGAAACACGGACGTGAGAGATTCCCCTCGACATTTCGGATTCAGAACCATATCGGACGGGGACGGCGTTTCGATCTTCGGCGGCAGCCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGTAACGATGGATTGATCGACGCCATTCATGGGTCTACTGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAATATGCAAGTTACCATTGCTTTCAACCATTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAACGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACTATCAACAGTCAAGGGAACAGATTTGTTGCACCGGATGACAGATTCAGCAAAGAGGTGACAAAATATGAGGATGCACCGGAGAGTGAGTGGAAGAATTGGCATTGGAGATCAGAAGGAGATCTGATGCTAAACGGTGCATTTTTCACTGCCTCCGGCGCCGGAGCGTCGTCAAGTTACGCTAGAGCATCGAGTTTAGGGGCGAGACCGTCGTCGCTCGTCGGTACAATTACAACAAATGCGGGTGCACTGAACTGCAGGAAGGGCTCCCGCTGCTGA 1236 50.08 MAPPTVPLSLLSLFLFSVSLSAALSAAPAAVPNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPDDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3763924 3766384 - ClCG03G003320.1 Cla03g00314 268814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00314 411 Pfam Pectate lyase 147 328 IPR002022 -
Cla03g00314 411 SUPERFAMILY Pectin lyase-like 38 406 IPR011050 -
Cla03g00314 411 PANTHER PECTATE LYASE 13 408 - -
Cla03g00314 411 SMART amb_all 137 334 IPR002022 -
Cla03g00314 411 PANTHER PECTATE LYASE 18-RELATED 13 408 IPR045032 GO:0030570
Cla03g00314 411 Gene3D - 62 404 IPR012334 -
Cla03g00314 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cla03g00314 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cla03g00314 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cla03g00314 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cla03g00314 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cla03g00314 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cla03g00314 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cla03g00314 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02123 Cla-Chr1:35485956 Cla03g00314 Cla-Chr3:3763924 2.49E-150 dispersed
Cla03g00314 Cla-Chr3:3763924 Cla09g01903 Cla-Chr9:36705078 0 dispersed
Cla03g00423 Cla-Chr3:4856036 Cla03g00314 Cla-Chr3:3763924 1.30E-150 dispersed
Cla03g00314 Cla-Chr3:3763924 Cla05g00372 Cla-Chr5:3399550 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00314 K01728 - csv:101209736 778.859