Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00315 ATGCCTTCAGCAAAGTTCAGACAAAGAACTTACGGTTCGCGCTCCAAGAGCTGCGAGTGCGAGCTTGAAGCATCCATGGAGGAAGTCGATGAGAAACAATGTATCAGAATTCTTCCTCACAAGCTCGTTCTCCAGAAAAAAGAGCCGGCTCTTCAATGGCTCATCGGATCGCCGTTTCTGTCGCCTTTGACTATCGTCTCCACTCTCAGATGCATCCATCATTCGTCTCCACCTGAATCTGTCTCGCCTGATTTCACCAAGGAAGCAGACGAGCTGCGGACGTTATTATTGAACGGTTTTTGTATTATTGGAGCATTGGTTGTTGGGAATTTCAACGTCGAAGAACATGCGAGTAAGGCAGTTGATGCGGCGCGGAGATTGAGGCAGCTTCTATCTCACGGTGAAAAGACTGACAAGCAAATATTGATTGGAGCGGTTGCTGATATCAATTCTACAGATATTCACTTTTTTGTCTCCCAGTCTGAAAATGGCTCGAGCTTGGATTCTGTTTCTTCGGTTATGTACGAAAACAATGCCGAAAAATATATTTGGGAGAGAGGTTGTCTGATCCGGTGCGAACTACCGATTAGTGTACCGCTCTATATTCCTCTCAACAGTCCATCAGATGTTGAAAAGACGTACATACATGCCACAGAATCTGTTATTTCCAAGTTGAGAGACCCACAGGTGGTATATATAGTGGAACCAGTATGCAAAAACTCCACAGAAGATCCTTGTCCAGTCATTTTACGTGGTTCACAAATGGATTTCCAAATTAATCTCTCGAAGTTTTGGCAATTGAATGATGGCAGCCAAAATGCTGATGGAATGTCTTTGCCATGTGCAAACTTTTGTTTAAAAAGTAAAACTGATTCCTCAACGTTTTGTTCACAGAATGCAGATATAATCCAAGTAAATGTTCTTCTAAATAGCTCGGCAAAGTCTCAAAAATCTAGTGCACCAGTTGTAGAGTACTTTCCAGCTGTGGACAAGACCAGGCTTTTGGTTGTCGACTTGAAGGCAGAAGTTCTCTGTTATGCTGCCAAGTTTCTTCCATTGACTTATGCTGTTTCAACCCTGATCATTCCAGGTTTAGTTGACCAGTTAAACTCGATGAAGAATGCAATATTACCCAACCTTCTAGTGCCATATCATTTTTGCCCTCTTGGATTTTTGCATCCAATAACTGTTATCTATGAACTCACTTATGGGGAGACTGAAATGAAGCAAGTGGAACTAAGGAAAGCCCTACACTTAAGATTAGGGTTACCTTTTGATCGTCCTGTGCTAAGAATTGCTAGTGCATTGGATTTCTCTGGCAGGAAGGACAATTTGCCACGAAAGGGTTCCTTTTTGCTCAAAGATGTTCATATTGGAATTCCAAGCAGCGGTGTTTCAGGAGGCCAAATGTCTCTGGTTCAGGGGTCGTATGAGTACCATCATTATCTTCAAGAAGGTTTCAATGACTCGGGCTGGGGTTGTGCTTATCGGTCTTTGCAAACTATCATTTCATGGTTCAGACTCCAACATTATACATCCATAGATGTTCCTTCACATAGCTGCAGTCTAGGCCCTGAAATCTCCAAGTCAAAGCAAATAGGAAGGGAAATACAAGAAGCACTAGTGGAGATTGGTGACAAGGATGATTCATTTATTGGGTCACGTGAATGGATTGGTGCCATCGAATTGAGCTTTGTTTTAGACAAATTGCTCGGTGTGAGTTGCAAAATCATAAATGTCAGATCTGGGGCTGAACTTCCGGAGAAATGTAGAGAATTGGCTGCACACTTCGAGAATCAAGGAACTCCTATAATGATTGGAGGTGGTGTTCTTGCATACACACTCTTGGGAGTTGATTACAATGAAGCAAGTGGAGATTGTGGGTTTTTAATATTGGATCCTCACTATACAGGAAGTGATGATGTCAAGAAAATTAAGCTCGTCTGCTGCTTATGTGCAGCATCCCCAAATCCCACCAGCCAGTCTCCATCTCCGATTTTCCTCCATTTTCTCGAAGAAGAAGAGGAGGAAGCAGAAGAAGTTAAGGAAAGTTATGGAGGAAACAAGACGGAAGAGGATTGGAACGACCCATTATTCAGATTTTTCAAATCCCGGACTTCAACAACGCAAGACCCACTACGGGAAAGCAAATTGTCCCTTCAGAAGAATCGCCGTTCGTCGTGGCATCTTGCCTCAGATGTCGAAGTTTCCGATGAAGCTGAAATTGCACTCGTGGAAGACAAGGGAAAATTGGGTTCTGTGAGTCGGAATTCTAGGGTCTTGCCGGATGGTCTCGTCGGAGACATTGTGCGAGTTGCGAGGAATTTGCCGCAGAATACGACTTTGGGGGAGACTTTGGGAGATTTTGAAGGAAGAATTAGTGAGAAAGAATGTCTGGAGGTGCTGCGCTTGTTGGGTGAGGAGAATCTTGTGGTATGTTGCTTGTACTTCTTTGAATGGATGGGTTTGCAGGAGACTTCGCTTGTTACACCTCGTGCTTATTCTCTTCTCTTTCCATTGTTGGGAAGAGCTGGAATGGGAGAAAAAATTATGGTGTTATTCAAGAACCTTCCACTCAAGAAGGAATTTCAGGATGTTCATGTATATAATTCTGCAATGTCTGGGCTTATGGTCTGCAAGAGGTACGATGATGCTTGCAAGGTGTACGAGGCCATGGAAACAAATAATGTCAATCCAGATCATGTGACATGTTCTATAATGATTACAATCATGAGAAAAATTGGCCGGAGTGCAAAGGATTCGTGGGATTACTTTGAGAAAATGAACAAAAAAGGAGTAAAATGGAGTCCAGAAGTTTTAGGTGCTCTGATTAAATCGTTTTGCGACGAGGGGCTGAAGAGTCAAGCACTTATCATCCAATTGGAAATGGAGAAGAAGGGGCTTGCTTTGAATGCGATCATGTATAATACAATCATGGATGCTTTTAGTAAATCGAATCAAATCGAGGAAGCTGAAGGTATCTTTGCTGAAATGAAATCTAAAGGAGTGAAACCAACGAGTGCAAGTTTTAACATCTTGATGGATGCATACAGTAGGAGGATGCAACCTGAGATTGTTGAGAAGCTTCTGGTTGAAATGAAGGACATGGGATTGGAGCCTAATGTGAAGTCATACACTTGCTTGATTAGTGCTTATGGGAGGCAGAAGAAAATGAGTGACATGGCTGCAGATGCATTTTTGAGAATGAAAAAGAACGGTATAAGGCCAACCTCTCATTCATATACAGCCCTGATTCACGCTTATTCGGTTAGCGGTTGGCACGAGAAAGCTTACTCGACATTCGAGAACATGCTGCAAGAAGGTTTAAAGCCATCCATTGAAACTTACACGACTCTTCTTGATGCATTTAGGCGTGCCGGTGATACTGTGGCGTTGATGAAAATATGGAAGTTAATGATTAGAGAAAAAATAGTAGGGACAAGAGTAACATTCAACATACTGCTAGATGGGTTTGCAAAACAGGGTCATTATGTTGAAGCTAGAGATGTGATCTCTGAGTTCGATAAGATTGGGTTACAACCAACTGTTATGACATACAACATGTTGATGAATGCATATGCTAGGGGAGGTCAACATTTAAAGATGCCACAGCTGCTGCAAGAGATGGCTGCTCGGGAACTAAAACCCGACTCCATTACTTATTCGACCATGATTTACGCCTTTGTACGTGTTCGCGATTTCAAAAGAGCTTTCTTTTATCACAAGAAGATGGTAAAAAGTGGACAAGTGCCTGATGTGAAGTCATACCAGAAACTTAGATCAATCTTGGATGTAAAACTTGCTACAAAGAACAGGAAAGACAAGAGTGCCATTCTTGGTATAATAAACAGCAAAATGGGAATGGTGAAAGCTAAGAAGAAGGGCAAGAAAGATGAGTTTTGGAAGAACAAGAGAAAGCATGTGAGAACTCAGAGAATTTCCCCCAGTTTAGCGGGTGGCACGAGAAAGCTAACTCGACATTTCAAGAACATGTTGCATGAAGGCTTAAAGCCTTCCATTGAAACTTACACGACTCTACTCAATGCATTTAGGAGTGCCGGTGATACTGTGGCGTTGGAAGTTAATGATTAG 4092 42.35 MPSAKFRQRTYGSRSKSCECELEASMEEVDEKQCIRILPHKLVLQKKEPALQWLIGSPFLSPLTIVSTLRCIHHSSPPESVSPDFTKEADELRTLLLNGFCIIGALVVGNFNVEEHASKAVDAARRLRQLLSHGEKTDKQILIGAVADINSTDIHFFVSQSENGSSLDSVSSVMYENNAEKYIWERGCLIRCELPISVPLYIPLNSPSDVEKTYIHATESVISKLRDPQVVYIVEPVCKNSTEDPCPVILRGSQMDFQINLSKFWQLNDGSQNADGMSLPCANFCLKSKTDSSTFCSQNADIIQVNVLLNSSAKSQKSSAPVVEYFPAVDKTRLLVVDLKAEVLCYAAKFLPLTYAVSTLIIPGLVDQLNSMKNAILPNLLVPYHFCPLGFLHPITVIYELTYGETEMKQVELRKALHLRLGLPFDRPVLRIASALDFSGRKDNLPRKGSFLLKDVHIGIPSSGVSGGQMSLVQGSYEYHHYLQEGFNDSGWGCAYRSLQTIISWFRLQHYTSIDVPSHSCSLGPEISKSKQIGREIQEALVEIGDKDDSFIGSREWIGAIELSFVLDKLLGVSCKIINVRSGAELPEKCRELAAHFENQGTPIMIGGGVLAYTLLGVDYNEASGDCGFLILDPHYTGSDDVKKIKLVCCLCAASPNPTSQSPSPIFLHFLEEEEEEAEEVKESYGGNKTEEDWNDPLFRFFKSRTSTTQDPLRESKLSLQKNRRSSWHLASDVEVSDEAEIALVEDKGKLGSVSRNSRVLPDGLVGDIVRVARNLPQNTTLGETLGDFEGRISEKECLEVLRLLGEENLVVCCLYFFEWMGLQETSLVTPRAYSLLFPLLGRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAMSGLMVCKRYDDACKVYEAMETNNVNPDHVTCSIMITIMRKIGRSAKDSWDYFEKMNKKGVKWSPEVLGALIKSFCDEGLKSQALIIQLEMEKKGLALNAIMYNTIMDAFSKSNQIEEAEGIFAEMKSKGVKPTSASFNILMDAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSTFENMLQEGLKPSIETYTTLLDAFRRAGDTVALMKIWKLMIREKIVGTRVTFNILLDGFAKQGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKMPQLLQEMAARELKPDSITYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLRSILDVKLATKNRKDKSAILGIINSKMGMVKAKKKGKKDEFWKNKRKHVRTQRISPSLAGGTRKLTRHFKNMLHEGLKPSIETYTTLLNAFRSAGDTVALEVND 1363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3783212 3799935 + ClCG03G003330.2 Cla03g00315 268815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00315 1363 Gene3D - 451 655 - -
Cla03g00315 1363 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1182 1216 IPR002885 -
Cla03g00315 1363 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1217 1251 IPR002885 -
Cla03g00315 1363 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 971 1005 IPR002885 -
Cla03g00315 1363 Gene3D Tetratricopeptide repeat domain 765 918 IPR011990 GO:0005515
Cla03g00315 1363 PANTHER OS03G0856100 PROTEIN 1316 1359 - -
Cla03g00315 1363 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 865 899 IPR002885 -
Cla03g00315 1363 PANTHER - 636 1311 - -
Cla03g00315 1363 TIGRFAM PPR: pentatricopeptide repeat domain 1149 1176 IPR002885 -
Cla03g00315 1363 TIGRFAM PPR: pentatricopeptide repeat domain 1185 1218 IPR002885 -
Cla03g00315 1363 TIGRFAM PPR: pentatricopeptide repeat domain 1079 1112 IPR002885 -
Cla03g00315 1363 TIGRFAM PPR: pentatricopeptide repeat domain 1115 1145 IPR002885 -
Cla03g00315 1363 TIGRFAM PPR: pentatricopeptide repeat domain 1009 1042 IPR002885 -
Cla03g00315 1363 TIGRFAM PPR: pentatricopeptide repeat domain 1219 1253 IPR002885 -
Cla03g00315 1363 TIGRFAM PPR: pentatricopeptide repeat domain 1044 1077 IPR002885 -
Cla03g00315 1363 TIGRFAM PPR: pentatricopeptide repeat domain 973 1006 IPR002885 -
Cla03g00315 1363 TIGRFAM PPR: pentatricopeptide repeat domain 868 900 IPR002885 -
Cla03g00315 1363 Pfam PPR repeat family 865 909 IPR002885 -
Cla03g00315 1363 Pfam PPR repeat family 1181 1229 IPR002885 -
Cla03g00315 1363 PANTHER OS03G0856100 PROTEIN 636 1311 - -
Cla03g00315 1363 Pfam Peptidase family C78 469 644 IPR012462 -
Cla03g00315 1363 Gene3D Tetratricopeptide repeat domain 919 1036 IPR011990 GO:0005515
Cla03g00315 1363 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1006 1040 IPR002885 -
Cla03g00315 1363 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1147 1181 IPR002885 -
Cla03g00315 1363 PANTHER - 1316 1359 - -
Cla03g00315 1363 Pfam PPR repeat 1149 1178 IPR002885 -
Cla03g00315 1363 Gene3D Tetratricopeptide repeat domain 1053 1162 IPR011990 GO:0005515
Cla03g00315 1363 Gene3D Tetratricopeptide repeat domain 1163 1277 IPR011990 GO:0005515
Cla03g00315 1363 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1041 1076 IPR002885 -
Cla03g00315 1363 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1077 1111 IPR002885 -
Cla03g00315 1363 SUPERFAMILY Cysteine proteinases 487 641 IPR038765 -
Cla03g00315 1363 Coils Coil 668 691 - -
Cla03g00315 1363 Pfam Pentacotripeptide-repeat region of PRORP 954 1123 IPR033443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00315 - - - bhj:120069367 1224.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00315 Cla-Chr3:3783212 Cla03g01216 Cla-Chr3:25949654 4.87E-16 dispersed
Cla03g00315 Cla-Chr3:3783212 Cla03g00316 Cla-Chr3:3799226 1.55E-37 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00315 Cla_Chr03 FPKM 3.540084 4.020167 8.332221 5.350323 0.0 0.0 0.0 4.985473 3.556998 4.632863