Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00317 ATGGCTTCAAATGAAGGATTTCTGACTGAAGAGCAGCGGGAAGTGCTGAAAATAGCAAGTCAGAATGTGGATGTTTTGTCATCCTCTCCAAAATCTCCCAAAGGCTCACTTCCTGAATATCATATAAAAGCCCCTGCTGGTGGGAAGGTTTCGGCACCTGGAGTTGGTGTGAAGCACGTGCGTAGATCTCACTCTGGGAAGTATATTAGGGTGAAAAAGGATGTAATTTATGTCGCTTGTCCTGTTCTTACCGTTCTAACCACTAATGGGGCTGGTGGTAAGGGCACCTGGGGTAAATTACTTGACACTGACGGTGACTCTCATATTGACAGAAATGATCCTAACTATGACAGTGGCGAGGAACCATATCAACTTGTTGGGTCGACTGTATCAGACCCCTTGGATGATTATAAGAAATCTGTTGTATCCATTATAGAAGAATACTTTAGTACTGGTGATGTGGAATTGGCAGCATCTGATCTGGGAGATCTTGGCTCAAGTGACTATCATCCTTACTTCATTAAACGGCTAGTATCTATGGCAATGGACAGACATGATAAGGAGAAGGAAATGGCTTCAGTTCTGCTTTCAGCTTTGTATGCCGATATCATCTGTCCTGCCCATATAAGAGATGGATTTTTTATGTTACTAGAATCTGCTGATGATCTTGCTGTCGATATATTGGATGCGGTTGATATCCTTGCTTTGTTCTTAGCTCGTGCTGTAGTTGATGACATACTTCCTCCAGCATTTCTAGCCAGGGCAAGGAAGGCATTGTCGGAATCATCTAAAGGAACTCAGGCTATCCAGACCGCTGAGAAGAGCTATCTCTCAGCTCCACATCATGCAGAGCTTGTGGAGAAAAGATGGGGAGGCAGCACACACTTCACAGTTGAGGAAGTGAAGAAAAAGATTGCTTATCTCTTGAGGGAATATGTTGAGAATGGTGATACTTTTGAAGCTTGCAGATGTATAAGACAGTTAGGCGTTTCATTCTTCCATCATGAGGTTGTGAAGAGGGCTTTGACTCTTGCCATGGAGATCCGAACAGCAGAACCCCTGATACTGAAGCTTCTGAAGGAAGCTGCTGAGGAAGGTCTGATAAGCTCAAGTCAAATGAGTAAGGGATTTTCTCGGTTGGCAGAGAGCCTTGATGACCTTGCTCTTGACATACCATCAGCAAAATCTTTGTTTGAATCCTTGATCCCAAGGGCCATATCTGAAGGATGGCTTGATGCTTCCTTTATAAAATCTTCAGATGAAGATGTGGATGTTGGATCTAAAGATGAAAAGTTGAGGCGCTACAAGGAAGAGGTTGTGACTATAATTCATGAATATTTTCTTTCAGATGACATTCCCGAATTAATACGAAGCCTAGAAGATCTCGGTGTGCCCGAGTATAATCCAATCTTCTTGAAGAAACTTATTACACTTGCAATGGATAGGAAAAACAGAGAAAAAGAAATGGCATCAGTGCTCCTTTCAGCTCTTCACATTGAGATATTTTCTACAGAGGATATAGTCAATGGTTTTGTGATGCTACTGGAGTCCGCAGAAGATACAGCGCTAGACATCTTGGATGCATCAAATGAACTTGCTCTCTTTCTGGCCAGAGCTGTGATTGACGATGTCTTGGCTCCTCTGAATCTGGAGGATATTGCTGGCAGGTTGATCCCAAATTGTACTGGAAGTGAGACTGTCCGAATGGCCCGGTCATTAATTGCCGCTCGTCATGCTGGTGAAAGGCTTTTGAGATGCTGGGGTGGTGGAACTGGCTGGGCAGTGGAGGATGCAAAGGATAAGATTCAGAAGCTCTTAGAGGAGTACGAAAGCGGAGGTGTTGTGAGTGAAGCTTGCCAGTGCATCCGTGATCTAGGGATGCCTTTCTTCAACCATGAGGTTGTGAAGAAGGCATTGGTTATGGCCATGGAGAAGAATGACAGGATTCTCGATCTGCTGCAGGAATGCTTCAATGTTGGCCTGATCACCATCAACCAGATGACTAAAGGCTTCTCTAGGATCAAAGACAGCCTCGACGATCTCGCACTTGACATTCCAAATGCAAGCAAGAAGTTTACATCCTATGTCGAGCACGCCCAGAAGAAAGGATGGCTCTTACCATCCTTCGGATCATCTGCTGCTGCAGATTCTTCAGTGCTCTTGGCTGCAGCTTCCTGA 2178 44.49 MASNEGFLTEEQREVLKIASQNVDVLSSSPKSPKGSLPEYHIKAPAGGKVSAPGVGVKHVRRSHSGKYIRVKKDVIYVACPVLTVLTTNGAGGKGTWGKLLDTDGDSHIDRNDPNYDSGEEPYQLVGSTVSDPLDDYKKSVVSIIEEYFSTGDVELAASDLGDLGSSDYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADIICPAHIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALSESSKGTQAIQTAEKSYLSAPHHAELVEKRWGGSTHFTVEEVKKKIAYLLREYVENGDTFEACRCIRQLGVSFFHHEVVKRALTLAMEIRTAEPLILKLLKEAAEEGLISSSQMSKGFSRLAESLDDLALDIPSAKSLFESLIPRAISEGWLDASFIKSSDEDVDVGSKDEKLRRYKEEVVTIIHEYFLSDDIPELIRSLEDLGVPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEDIAGRLIPNCTGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIQKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKNDRILDLLQECFNVGLITINQMTKGFSRIKDSLDDLALDIPNASKKFTSYVEHAQKKGWLLPSFGSSAAADSSVLLAAAS 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3802077 3806626 + ClCG03G003370.1 Cla03g00317 268817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00317 725 ProSiteProfiles MI domain profile. 300 421 IPR003891 -
Cla03g00317 725 SUPERFAMILY ARM repeat 432 591 IPR016024 -
Cla03g00317 725 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 708 - -
Cla03g00317 725 ProSiteProfiles MI domain profile. 597 715 IPR003891 -
Cla03g00317 725 SMART ma3_7 137 248 IPR003891 -
Cla03g00317 725 SMART ma3_7 301 412 IPR003891 -
Cla03g00317 725 SMART ma3_7 435 546 IPR003891 -
Cla03g00317 725 SMART ma3_7 598 706 IPR003891 -
Cla03g00317 725 Gene3D - 585 712 - -
Cla03g00317 725 Gene3D - 286 420 - -
Cla03g00317 725 SUPERFAMILY ARM repeat 594 710 IPR016024 -
Cla03g00317 725 PANTHER PROGRAMMED CELL DEATH 4 1 708 IPR039778 GO:0045892
Cla03g00317 725 SUPERFAMILY ARM repeat 135 294 IPR016024 -
Cla03g00317 725 Pfam MA3 domain 436 545 IPR003891 -
Cla03g00317 725 Pfam MA3 domain 301 412 IPR003891 -
Cla03g00317 725 Pfam MA3 domain 138 248 IPR003891 -
Cla03g00317 725 Pfam MA3 domain 599 705 IPR003891 -
Cla03g00317 725 ProSiteProfiles MI domain profile. 136 257 IPR003891 -
Cla03g00317 725 Gene3D - 429 577 - -
Cla03g00317 725 Gene3D - 130 278 - -
Cla03g00317 725 SUPERFAMILY ARM repeat 297 418 IPR016024 -
Cla03g00317 725 ProSiteProfiles MI domain profile. 434 555 IPR003891 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00317 - - - csv:101209979 1290.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00317 Cla-Chr3:3802077 Cla06g01250 Cla-Chr6:25683610 2.22E-06 dispersed
Cla03g00317 Cla-Chr3:3802077 Cla05g01671 Cla-Chr5:28393446 1.39E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g883 Blo04g00711 Blo16g00247 . . . . Bma06g00241 . Cmo13g00804 Cmo18g00181 . . . . . Cpe20g00337 . . . . . . . . . . . . . . . Cone2ag0946 Cone16ag0054 Cone13ag0195 Cone19ag0188 Lsi02g00460 Csa01g00918 . Cme12g01630 . . Bda11g01627 Bda14g00784 . Bpe15g00662 . . Sed08g2468 . . Cma13g00774 Cma18g00205 Car13g00620 Car18g00200 Cpe09g00991 . Bhi08g01687 Tan05g2890 Cmetu12g0918 Lac10g0533 Hepe07g2167 . . Cla03g00317 Cam03g0335 . . Clacu03g0336 Cmu03g0942 Cre03g0636 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003831 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00317 Cla_Chr03 FPKM 10.440443 13.609207 9.53867 9.9447 1.670051 1.374458 1.395742 1.117378 0.798024 1.123781