Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00321 ATGGCAGCAACAGCCATGGCTGCGGAGCCGACGCAAGAGGTACTTTCTTGGCTCAAAACCCTACCGTTGGCTCCTGAATATCATCCGACTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTACCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTTAATAAGTCGCTTGCAGCTCGTGCCCCCTGTTCTGGCTCGACTAATTCCAAGTCTCCGCCTACATTCACAACTCGACAACAGCAGATCGGGTTTTGCCCGCGGAAAACACGACCTGTTCAGAAATCAGTGTGGCAGAGCGGTGAGTACTATACATTTCAGCAATTTGAGGCTAAGGCGAAGAACTTTGAGAAAAGCTATTTGAAGAAATGTGCCAAGAAAGGAGGGCTTTCGTCTTTGGAAATCGAGACGCTCTATTGGAGGGCCACTTTGGACAAGCCCTTTTCGGTGGAATATGCAAACGATATGCCTGGTTCAGCTTTTGTGCCGGTAAGTGCAAAAATTTTTAGGGAGGCAGGGGAAGGAACAACGCTTGGGGAAACGGCGTGGAACATGAGGGGTGTGTCTAGGGCGAAAGGGTCTCTGTTGAGGTTTATGAAGGAAGAGATTCCAGGAGTTACTTCGCCAATGGTTTATGTTGCTATGATGTTCAGTTGGTTTGCTTGGCATGTAGAAGACCATGACTTGCATAGTTTGAATTATCTGCATATGGGGGCGGGAAAGACTTGGTATGGTGTACCTAGAGATGCTGCTGTGGCGTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATTAATCCCCTTGGTTTTATGGTTACAGGAAGAAACATATTGTACTTGTTAAGTTGGATTGGTGTAACTGAGTACGTGTTTTTAAGCGGACAGCATTATTATAGACATGCTATTGGATGGGATGTTCCTCTGCTCATTATCCCTTGCATAACAAGGTTCACTCTTTTACCAATCGGACTGCCTGCTCAGTTTCTTGTCCCCGTCCATCAATGCTTCTCATGCATTTTATCCTTCCCTTTTGCGTTTACATTGTTAAGTTTTGATTATGAGAGTGCTTCAGGAAGTGGATCCTTCTTTGCTTTTTCCACTTCTTTCATATGTGTGCCATATATAATAACTTTTGCTGTTCTTGGTGAGAAGACCACTGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGGTAGGTACCTGGGAATTAAAACATCAGTCATTCCAAATGGTCTTACTCTTACCAGTTGATGATGATATTTGCCCAAAAAGTATCGCCATTTCCATTGAGTCCCTTGCATCATCATTTGACCTCAAAAGTAGTCAGATCTGTGTACTCACTGCTTTAATTGATTTGCACCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGCAGCCAATATTGCAACTCCAGAATGGTTAAGGGTTGCTAAAGATGCTGCAATTCGTAGAGCTTCCATCAATTATCCTCCAATGGTCTCTCATTATCAGTTGCTATATGATCTTGCTTTAAGTTCCAGAGCACCTATGTGCACTGGTGCTGAACCAAGAAGTTCACGACTGAAAGATAAAAGGAGGAGTGAAGGGGAAACGGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACACCCTGCTGGACATTCTTGGAAGAGGAGCTTCAGTTGTACTTCTTCCCCCAGGTTCTTTAGAATCGATTTATTCCAGACTGCGTGTTGGATCCCACTTGAGAGCAAAATCTAGATTTCCTGCTGGTGTTTGCAGTTCTAAGGAAGAAACCAAATCTCCTCAAAGTTTTGATTATGATAATCTCGCACTAGAAAATAGTCCGGGAATTAATCGAGTGAAGGGTTTCTATTCAGCTAACGGGCTATATTCTACTCTATCTGAAAGTAGCATGGACAATTTATGTGCTTCAAGTTCAAGGTCTTTGAATGCCAACCACGAACGGGGTGGTAATGTTCAAAGCGATGGATTATCAGATCAAAGACTCTTTTCTTGTGTCACATGTGGTATTTTAAGCTTTGCCTGTGTAGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTCGTTGGTTCTGGGATAGCCAGTGAAGGGATTGCTACTAGAGATGGGCATGCAGTTAGCTCTCGGCAGAATAGTAACAGGGGAAAAAGAGATAAATGTGTCTCTGATGGTTTGTACGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTACAGTAGCAGATGAAAGTTACGAAGCTAATTTGAATACTGAAAAACGGAATGAGACTTCTGCCCTTGGAATGCTTGCATTGACTTATGGACATTCTTCTGATTCTGAGGAGGACCATGCTGAAGCAGATGCTGCTTTAAATGCAGATGATGATGCTAAACTAATGATTTGTTCTTCCGAAGACCAATATCAGTTTGAGAATTCTGGCCTTTCTTCTGGTGAATATTGCAAGAATACTGCAATTTCGAATAACGATCCCTTGTCTTATGGTGTTAACGCTGCAGATCAAATGCAATTTCAAGTCAATGACTATGAAGAATTTGGGCGAGCTAGATCTGATTCCAAAGATTCGTTCAATTGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACAAAGAAAAATGGCTTGTCAACTAGATATCAAGATTCACATGTGAATGTTAGATCTTCCTTGGATGCTGATACTGATAAACCAGTGTTTGACAAGTCCACTGAACCAGTGGAGATTGAGGATATGCCATTTGCTCCAGATATCGATGAAGACTCCTCGAGATTGCATGTATTTTGTCTAGAGCATGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGTGAACATTCTTTTACTTTGTCATCCAGGATTAGACAGATTGAACCCTGAACTGTTCCACCTTCCCCACAAAATAATAATAGTTATTATTATTATAATTGTAACAATAAATTTTAACGATAATAAACTTAAAATTTTCCCTGAAAACTTCACCGGCTTATCACTGATTTGTGATTTTGTTGGTGTTTCAAACCATTTAAGTGGTTTAGTAAGTTTTACATTATCTCTGGAGAACAACAAGTTCAATCTCTTAGTTACATTTCAAGGCCTCCTGAGAAGGGTTACTTCTTTTGCTGCAAATTCTTCCAAGCCTTCTACCTTTCTTTTGGTGTTTTCTGACGTAGATGAGTCACCAAACTATCCGAAGATGGAGGCAGAAGCAAAACTGCTGGCACAAGAATTAAATATGAACCATCTGTGGACTGATACAATGTTCAGAGGTGCCACCCAAGATGAAGAAAAGAGGATTCAGTTAGCTTTAGATAGCGAGGAAGCAACTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATAAACCTATTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCATTTGGCCGTAGTACTTCTGCTAACTCTTCTGGTAAGCCGAAAGTCTATCAAAGGAGAACTGGCAAGCTGAAAAGAGTAGTTGCAGGGAAATGGTGCGGGAAAGTCTGGATGTCAAATCAAGTTCATCCTTTACTGGCAAAGAGAGATCCTCAAGAAGAAGATGTAGACATCTTCTCTTCTTGGACAATGTCAGATGAGAAGATTGATAGGAAACCAGAAAATATCCAGAAAAACGAGACTGTTATGGTCAATAGAAAGTCTGCTGGCAAGAGAAAAATGACTTATGGGAGCGGAACAACTAAGAAAGCCAAACCTATAGAGTCAGAGGACATGGTTTCAGATGCTTCGGTTGAAGATTGTATCCATCAGCATCATAGTATTCTACGAAACAAGCGATCCAAATTTGTTGAGAGCAATGATGCTAGATCAGATGATTCTGTGGAGGATGATTCTTGTAGAAAACATGGAGTTCCCATTAGCAAGGGAGTGACATATTGTGGGATAGATGATACTGGTTCAGATGATTCTCTTGGAGATCGTCATAATCTGCGCAGAGGGTTCTCTGGATTCAAGCTGCCTAAGTGGGGTGAGATAGAACCTGCACTTTCTGATGATTCCTTAGAGCACTATTCTTCTCAGCATCGTGGGAAAAATATTAAAAGCAAGACAGAAGAATACATTGAGAGACAAGATGCACTTTCAGATGAGTGTCTGGAGAGTGGTTCTCTTAAGCAATATAGAAGGATTCCGAGAAGCAAGCAAACCAAAGTTCTTAAAAAGAATGCCATTTCACATGATATACGGGATGATAGTTTTCTTTGGCATCATCAAAGGCCTTCCAGAAGCAAGAAGGCCAAATCTATCGAGAGTGAAGATGCAGTTTCAGAGGACTCCCTAGAAAATAATTCTCATCAGCATAGAAGTATGCCTCAAAGAAAACCAGTCAAACGCACTGCAAGGGAAGATGCATTTTCAGATGGTCCAGATGAAGATGATAATTCTCTTCTGCAGCATCGGAATATTAGAAGAAATGTGCAATTCAAATACAGTGAGAGAGAAATTACATCAGATGACCAGCTTGATGATACTGCTAATCAAAGCAGGAGGAGGGTACTCCGAAGTAAGCCAGTCAAGACAGAGACAATTTCACAAATGAAACAAGAGATCCTGCGACCTGCAAGGCGGAGAGCCTCTCAGACTTTGAAAGAAGAATTTGCTCAATCTTTAAAACGTGGAGGCCGCCATACGTTAAAATTAGAGACCCCTCAGCCAAAAATACAGCCTGCCACAAATAGACGAGGTAAGCAAACTAAGAGGAATAGTAAATCGACTGATTTAGAGTCAGAGGAAGAGCAACCAGGTGGACCTAGCACACGTCTTAGAAAAAGAACCCCAAAGCCTACAAAACTTTCAGAAGCAAAGCCAAAAGATAAAAAACCAATTGGCAAGAAAAAGGTGAAGAATGGTTCATCCTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGACGAGGAATCAGAGTATCTTTGTGACATCGAGGGTTGCAATATGAGTTTTGGTTCAAAACAAGAACTTGCCATGCACAAACGAAATATTTGTCCTGTCAAGGGGTGTGGGAAGAAGTTTTTCTCACATAAGTACCTTGTGCAGCATCGTCGAGTCCACATGGACGATCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACAGGTGCCCGACCTTATGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTTGTTTCGGATTTTAGTCGTCACAAGCGGAAGACTGGACATTCGACAAAGAAAGGTAGAGGTTAA 5472 41.79 MAATAMAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNKSLAARAPCSGSTNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKNFEKSYLKKCAKKGGLSSLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKIFREAGEGTTLGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLGFMVTGRNILYLLSWIGVTEYVFLSGQHYYRHAIGWDVPLLIIPCITRFTLLPIGLPAQFLVPVHQCFSCILSFPFAFTLLSFDYESASGSGSFFAFSTSFICVPYIITFAVLGEKTTVMSPEVLVSAGVPCCRVGTWELKHQSFQMVLLLPVDDDICPKSIAISIESLASSFDLKSSQICVLTALIDLHQVNLLSLFLELIIQVSAMAANIATPEWLRVAKDAAIRRASINYPPMVSHYQLLYDLALSSRAPMCTGAEPRSSRLKDKRRSEGETVIKELFVQNIVENNTLLDILGRGASVVLLPPGSLESIYSRLRVGSHLRAKSRFPAGVCSSKEETKSPQSFDYDNLALENSPGINRVKGFYSANGLYSTLSESSMDNLCASSSRSLNANHERGGNVQSDGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGIASEGIATRDGHAVSSRQNSNRGKRDKCVSDGLYDVPVQAVNRQLTVADESYEANLNTEKRNETSALGMLALTYGHSSDSEEDHAEADAALNADDDAKLMICSSEDQYQFENSGLSSGEYCKNTAISNNDPLSYGVNAADQMQFQVNDYEEFGRARSDSKDSFNCSSESEMDGIGSTKKNGLSTRYQDSHVNVRSSLDADTDKPVFDKSTEPVEIEDMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVNILLLCHPGLDRLNPELFHLPHKIIIVIIIIIVTINFNDNKLKIFPENFTGLSLICDFVGVSNHLSGLVSFTLSLENNKFNLLVTFQGLLRRVTSFAANSSKPSTFLLVFSDVDESPNYPKMEAEAKLLAQELNMNHLWTDTMFRGATQDEEKRIQLALDSEEATPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPQEEDVDIFSSWTMSDEKIDRKPENIQKNETVMVNRKSAGKRKMTYGSGTTKKAKPIESEDMVSDASVEDCIHQHHSILRNKRSKFVESNDARSDDSVEDDSCRKHGVPISKGVTYCGIDDTGSDDSLGDRHNLRRGFSGFKLPKWGEIEPALSDDSLEHYSSQHRGKNIKSKTEEYIERQDALSDECLESGSLKQYRRIPRSKQTKVLKKNAISHDIRDDSFLWHHQRPSRSKKAKSIESEDAVSEDSLENNSHQHRSMPQRKPVKRTAREDAFSDGPDEDDNSLLQHRNIRRNVQFKYSEREITSDDQLDDTANQSRRRVLRSKPVKTETISQMKQEILRPARRRASQTLKEEFAQSLKRGGRHTLKLETPQPKIQPATNRRGKQTKRNSKSTDLESEEEQPGGPSTRLRKRTPKPTKLSEAKPKDKKPIGKKKVKNGSSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELAMHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGRG 1823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3828150 3836490 + ClCG03G003410.2 Cla03g00321 268821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00321 1823 Pfam JmjC domain, hydroxylase 228 279 IPR003347 -
Cla03g00321 1823 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 290 - -
Cla03g00321 1823 ProSitePatterns Zinc finger C2H2 type domain signature. 1732 1754 IPR013087 -
Cla03g00321 1823 SMART JmjN_1 23 64 IPR003349 -
Cla03g00321 1823 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1110 1813 - -
Cla03g00321 1823 Gene3D Classic Zinc Finger 1728 1814 - -
Cla03g00321 1823 SUPERFAMILY Clavaminate synthase-like 209 315 - -
Cla03g00321 1823 ProSitePatterns Zinc finger C2H2 type domain signature. 1762 1784 IPR013087 -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 907 926 - -
Cla03g00321 1823 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1110 1813 - -
Cla03g00321 1823 PANTHER LYSINE-SPECIFIC DEMETHYLASE 395 423 - -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 1552 1702 - -
Cla03g00321 1823 Pfam jmjN domain 25 58 IPR003349 -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 896 926 - -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 1471 1535 - -
Cla03g00321 1823 SMART cupin_9 195 373 IPR003347 -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 1586 1615 - -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 1552 1573 - -
Cla03g00321 1823 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 290 - -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 1662 1676 - -
Cla03g00321 1823 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 497 1007 - -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 1332 1351 - -
Cla03g00321 1823 Gene3D Cupin 5 307 - -
Cla03g00321 1823 ProSiteProfiles JmjC domain profile. 198 517 IPR003347 -
Cla03g00321 1823 ProSiteProfiles Zinc finger C2H2 type domain profile. 1760 1789 IPR013087 -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 1471 1504 - -
Cla03g00321 1823 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 395 423 - -
Cla03g00321 1823 SUPERFAMILY beta-beta-alpha zinc fingers 1746 1788 IPR036236 -
Cla03g00321 1823 ProSiteProfiles Zinc finger C2H2 type domain profile. 1730 1759 IPR013087 -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 1635 1654 - -
Cla03g00321 1823 ProSitePatterns Zinc finger C2H2 type domain signature. 1792 1816 IPR013087 -
Cla03g00321 1823 PANTHER LYSINE-SPECIFIC DEMETHYLASE 497 1007 - -
Cla03g00321 1823 SMART c2h2final6 1707 1729 IPR013087 -
Cla03g00321 1823 SMART c2h2final6 1730 1754 IPR013087 -
Cla03g00321 1823 SMART c2h2final6 1760 1784 IPR013087 -
Cla03g00321 1823 SMART c2h2final6 1790 1816 IPR013087 -
Cla03g00321 1823 ProSiteProfiles Zinc finger C2H2 type domain profile. 1790 1821 IPR013087 -
Cla03g00321 1823 SUPERFAMILY beta-beta-alpha zinc fingers 1778 1812 IPR036236 -
Cla03g00321 1823 MobiDBLite consensus disorder prediction 1284 1306 - -
Cla03g00321 1823 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00321 - - - csv:101210063 1284.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00321 Cla-Chr3:3828150 Cla08g00775 Cla-Chr8:20135659 5.80E-25 dispersed
Cla11g01313 Cla-Chr11:26648884 Cla03g00321 Cla-Chr3:3828150 4.64E-06 dispersed
Cla03g00321 Cla-Chr3:3828150 Cla09g01096 Cla-Chr9:11773233 3.49E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60780 PF02373 JmjC 7.40E-15 CL0029 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00321 Cla_Chr03 FPKM 2.173139 2.270218 0.742463 0.846992 1.009011 0.251167 0.705969 0.0 0.0 0.0