Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00322 ATGGAACCTTCTGAAGCTGTTTCGGTCCCTAATCACTGTGAAGCACCGGCTTCTGGGTTTCAATCTTCACAGTTTCATAGTTCTGTTCTTGATCCTGCTCCATTTGATGCACAGCATGTAGCCACAGATGATCGCATCCATGCAGAACTTCAGAAATTGGATTTGAAGGATGAGAAAGAGGAAACCGTGAAAGATTTTGATGAAGGTGGAGAATGGGAAGTTGCGAAGAATCCCTGTGAAGATGAAGGAAATGATACGAAGAAGATCGATGAAAGTGATCGAGATAGAAGCGTTAGGAATGAGGATGATGATGATGATGTCGATGAGGAGGTTGATGCAGGCGACGGCGACGGCGGTGAAGTGGAAAGGAAAGGGGATTGGAGAGCCAGAAGCAACCAATACCCAGTACGGCCTGAGGCTGAGGATTGTGCGTTTTACCTTAAAACAGGGACTTGCAAGTTCGGATCATTTTGCAAATTCAATCACCCTGTGCGAAAGAAAAACCAGGTTGTTTCTGAGAAATTGAAATACGAGGACGATTCAGCTGGGATAGCAAGCAAGACAGAATGCAAGTTTTACTTGAGGACCGGGGGTTGTAAATATGGAAACGCCTGTAGATATAACCACACAAGACCAAGAACGGTAACAAGCCCAATTTTAGAACTGAACTTCCTTGGTCTGCCAATCCGACCAGTTAAGTTTGTTCTTCATTATTATTTAACGGATGAAAAAGAATGTCCCTATTACATGCGCACAGGGTCCTGCAAATACGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAACTGTTGCTGTATCTGAATCTCTTTCAGGATATAACAATGGAGTGCCCCTACAAGGTGCATCACAATCACAGATCACATCCTGGACTTCACCAAGAGTACTTAACGAAGCCACAACATTTGTACCTGCTATGATTTCACCATCTCAAGATTCAGAATGGAATGGAATAATTCGGTTTAGTTTCTGGTACTCCTTGGCTGACTTCCTTCATGGTATGTACAATGTTAAGGCTCCCATTTATCCATCAGAAATCAGCGTGCTTCCACCTCCAACATACGTCGTGAACAATATAGCATCGGAGACGGATCTCTATTCTTCTCATCAGCAGGTGGACGAATATCCAGAACGACCTGGTCAACCCGAATGCAGTTACTTTCTAAAGACGGGAGATTGTAAATTTAAATCTCTTTGCAAATATCACCATCCGAAGAATCGGAACCCTAAGTTACCGACTTGCACTCTCAATGACAAAGGCCTGCCTTTGAGACCTGATCAGAACGTATGCACGTATTATAGTCGCTATGGCATCTGCAAGTTCGGGCCATCGTGCAAGTTTGACCACCCTATTCTTCCAGCTTCTTCAACTGTGGGCGAGCTTGAACAGCAACCTCACTACGGCAACTTCAGCACTGCAGAAGGGGCTGAAATGGCCGGAGGAGGGAGCGGAAACAGTGCCACAGTTGAGCAGTCTGCATAA 1503 44.84 MEPSEAVSVPNHCEAPASGFQSSQFHSSVLDPAPFDAQHVATDDRIHAELQKLDLKDEKEETVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNEDDDDDVDEEVDAGDGDGGEVERKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQVVSEKLKYEDDSAGIASKTECKFYLRTGGCKYGNACRYNHTRPRTVTSPILELNFLGLPIRPVKFVLHYYLTDEKECPYYMRTGSCKYGANCKFNHPDPTTVAVSESLSGYNNGVPLQGASQSQITSWTSPRVLNEATTFVPAMISPSQDSEWNGIIRFSFWYSLADFLHGMYNVKAPIYPSEISVLPPPTYVVNNIASETDLYSSHQQVDEYPERPGQPECSYFLKTGDCKFKSLCKYHHPKNRNPKLPTCTLNDKGLPLRPDQNVCTYYSRYGICKFGPSCKFDHPILPASSTVGELEQQPHYGNFSTAEGAEMAGGGSGNSATVEQSA 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3837345 3842406 + ClCG03G003420.2 Cla03g00322 268822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00322 500 ProSiteProfiles Zinc finger C3H1-type profile. 184 212 IPR000571 GO:0046872
Cla03g00322 500 ProSiteProfiles Zinc finger C3H1-type profile. 240 268 IPR000571 GO:0046872
Cla03g00322 500 SMART c3hfinal6 385 412 IPR000571 GO:0046872
Cla03g00322 500 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Cla03g00322 500 SMART c3hfinal6 431 458 IPR000571 GO:0046872
Cla03g00322 500 SMART c3hfinal6 185 211 IPR000571 GO:0046872
Cla03g00322 500 SMART c3hfinal6 242 267 IPR000571 GO:0046872
Cla03g00322 500 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Cla03g00322 500 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Cla03g00322 500 SUPERFAMILY CCCH zinc finger 188 212 IPR036855 GO:0046872
Cla03g00322 500 SUPERFAMILY CCCH zinc finger 137 166 IPR036855 GO:0046872
Cla03g00322 500 ProSiteProfiles Zinc finger C3H1-type profile. 431 459 IPR000571 GO:0046872
Cla03g00322 500 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13-RELATED 43 484 - -
Cla03g00322 500 MobiDBLite consensus disorder prediction 478 500 - -
Cla03g00322 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 163 IPR000571 GO:0046872
Cla03g00322 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 387 412 IPR000571 GO:0046872
Cla03g00322 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 434 457 IPR000571 GO:0046872
Cla03g00322 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 209 IPR000571 GO:0046872
Cla03g00322 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 243 266 IPR000571 GO:0046872
Cla03g00322 500 MobiDBLite consensus disorder prediction 52 101 - -
Cla03g00322 500 MobiDBLite consensus disorder prediction 15 29 - -
Cla03g00322 500 MobiDBLite consensus disorder prediction 1 31 - -
Cla03g00322 500 SUPERFAMILY CCCH zinc finger 237 268 IPR036855 GO:0046872
Cla03g00322 500 MobiDBLite consensus disorder prediction 52 129 - -
Cla03g00322 500 MobiDBLite consensus disorder prediction 102 116 - -
Cla03g00322 500 SUPERFAMILY CCCH zinc finger 429 457 IPR036855 GO:0046872
Cla03g00322 500 Gene3D - 182 278 - -
Cla03g00322 500 Gene3D - 430 483 - -
Cla03g00322 500 Gene3D - 339 418 - -
Cla03g00322 500 Gene3D - 118 179 - -
Cla03g00322 500 PANTHER PROTEIN PHOSPHATASE RELATED 43 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00322 - - - cmo:103484086 853.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00322 Cla-Chr3:3837345 Cla03g01037 Cla-Chr3:19840153 5.36E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60781 PF00642 zf-CCCH 6.10E-09 CL0537 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00322 Cla_Chr03 FPKM 19.96636 23.245562 19.769197 22.930471 23.632898 22.291218 21.749809 13.525631 14.053514 15.555445