Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00327 ATGGCTGTGGATGCAAAGAAATCCTTCAATGCTAATGTCGATCTCTCAAAAGGCTGGTCGAGGTTTCACATGAAAGCTGTAGGAAGCTTTCTGTCTCCTGGGCATCTGAATGAGAAGTGCATTAATGCATCTTTGAAATACAGTAGAAGGCAGCAAAAGATGAGCAGCAAGGTAGAAGCCTGTTCAGAATGCACCCGAAGATGCTTACATCTTCATAGAAAGACAGGGAATTTATCATCTGTTAGGTCATTCTTCAAAGTGATGTTTGGAGATCACTTTTCTGAAGTTTTGTACTTCCCACCTATGTTTGCTGCTACAGTGTCGAGGTTGGTTAATGAAAAGGTTGTTCTTGAGGATTCTCTTGGACAACAATGGAAGGTAACGGTTTCTAATTGTGAAGGATCCCTTGCCTTTCAAGAAGGATGGAATGCTTTTTCATCAGAGCATAGCCTTGAAATTGGAGATTTTTTGATCTTCAATCGCGTTATGGACTTGCACTTCAATGTTCGTATCTACACGAAAACTGGTTGTGAAAAAGTAGAGTTTGCTAAAAAAAGCAATATGAGGAAAAGAACTAGAAGTTCTGGTCCTGTACTTGAGACAACTAATGAAGGTTTGACAAATCCGCAAGCTTCATACCCCTCTGTGGGTTCTGAATCCAATGTGGCATTATCTCAAGATAAATGCCACATGGCTGGTTCTCGAAACATGAATGTAAACTGGGACAAAAGGCCGAAGTGCTGGAGGAATGATGAGGGGCATGGACCTCTCTGTAAAATAGACGTTGTTGATGATCCATATTGTTTCATCAACCAAAACAAGGATGTGGGACTGGAGGAAAACAGAAGCCCCTTACTTGACTTGTTTTCCATGGAAATGCAGATAGTCAGTCCCTTGATTCCCTCCATCAACGAGAATACCACAAATAATGTTGCTGAGGATGAGTTAAATCCCTCAATTCCTTCTACATCACTGAATGCTGCAATCATTGTCAGCCCAGTTAACAATGCTCCGGTAGATATAAGAGGAGACATGGAAGCATTGCCTTTGAATATATCTGCTAACGAGTTAATTAATAAAAGTCAGTGTTTTGAGAAGGCTGAGATAAAGACGAGTGTCTCTGACAACGATCCTTGCCACGACAAGACTATTGAGGTTCCTTTTATTTCATCTGCAAAAAATTCTGATAGAGATGTTGAGAACTTTTGTGGCACGCCATTAAAAATAAAAGAATCTTCATTTCTTGCCATCCCGAATTGGAGAAATGTTGTAACTTTAGCTTATTGTGAATGTTGTATTCAAACAGGGGATGCGACGAAGATCATTAAGAAGGAACCATTGGAAATTAAAACAGAATGGAACCAAAAGTCGTTAAAGAGGAGATCTTTGAGACGTCTAACCAAAGTGGTAGAGATAATAATGATGACACTAATAATGAAGATCCGATTGGAACTCCAGCCCATATCTCCTGAGCTGCCAACGAGTTTGCACCTATCATGTTCAAGAGGCCGAAGAAATCCAGAGAAGAAGAAGGTAGTGTTTCTTAGGGATCCTAGGAAGAGATTATGGCCAATTCTTTACCACGAGATGCCTAATGTTAAAGTTCTAACAAGTGGGTGGGAAGCTTTTTGCTCTGCAAATAAAATCCAATCTGGGGACGAGTGTTTGTTTCATGTCGAGGATGAGTTCGAGCGCATATATGAAGTTAATTTTGGTTTTCTGTTCAAATTTCTTGTGGAAAAAGAAGAGCATTACTCTGAGACAATGGTGGAAACTGTTGCAGTGTAA 1788 40.16 MAVDAKKSFNANVDLSKGWSRFHMKAVGSFLSPGHLNEKCINASLKYSRRQQKMSSKVEACSECTRRCLHLHRKTGNLSSVRSFFKVMFGDHFSEVLYFPPMFAATVSRLVNEKVVLEDSLGQQWKVTVSNCEGSLAFQEGWNAFSSEHSLEIGDFLIFNRVMDLHFNVRIYTKTGCEKVEFAKKSNMRKRTRSSGPVLETTNEGLTNPQASYPSVGSESNVALSQDKCHMAGSRNMNVNWDKRPKCWRNDEGHGPLCKIDVVDDPYCFINQNKDVGLEENRSPLLDLFSMEMQIVSPLIPSINENTTNNVAEDELNPSIPSTSLNAAIIVSPVNNAPVDIRGDMEALPLNISANELINKSQCFEKAEIKTSVSDNDPCHDKTIEVPFISSAKNSDRDVENFCGTPLKIKESSFLAIPNWRNVVTLAYCECCIQTGDATKIIKKEPLEIKTEWNQKSLKRRSLRRLTKVVEIIMMTLIMKIRLELQPISPELPTSLHLSCSRGRRNPEKKKVVFLRDPRKRLWPILYHEMPNVKVLTSGWEAFCSANKIQSGDECLFHVEDEFERIYEVNFGFLFKFLVEKEEHYSETMVETVAV 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3857168 3862479 + ClCG03G003480.1 Cla03g00327 268827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00327 595 CDD B3_DNA 507 581 IPR003340 GO:0003677
Cla03g00327 595 ProSiteProfiles B3 DNA-binding domain profile. 82 175 IPR003340 GO:0003677
Cla03g00327 595 MobiDBLite consensus disorder prediction 188 218 - -
Cla03g00327 595 SUPERFAMILY DNA-binding pseudobarrel domain 80 177 IPR015300 -
Cla03g00327 595 CDD B3_DNA 82 172 IPR003340 GO:0003677
Cla03g00327 595 ProSiteProfiles B3 DNA-binding domain profile. 513 573 IPR003340 GO:0003677
Cla03g00327 595 Gene3D - 78 177 IPR015300 -
Cla03g00327 595 Gene3D - 492 572 IPR015300 -
Cla03g00327 595 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 60 569 - -
Cla03g00327 595 MobiDBLite consensus disorder prediction 192 218 - -
Cla03g00327 595 SMART B3_2 488 570 IPR003340 GO:0003677
Cla03g00327 595 SMART B3_2 84 175 IPR003340 GO:0003677
Cla03g00327 595 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 60 569 IPR044837 -
Cla03g00327 595 SUPERFAMILY DNA-binding pseudobarrel domain 506 563 IPR015300 -
Cla03g00327 595 Pfam B3 DNA binding domain 505 562 IPR003340 GO:0003677
Cla03g00327 595 Pfam B3 DNA binding domain 84 173 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00327 - - - cmo:103484129 705.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00327 Cla-Chr3:3857168 Cla05g01994 Cla-Chr5:31726998 3.36E-11 dispersed
Cla03g00327 Cla-Chr3:3857168 Cla01g01618 Cla-Chr1:30920979 1.94E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g901 . . . . . . . . Cmo13g00811 Cmo18g00189 . . . . . Cpe20g00331 . . . . . . . . . . . . . . . . Cone16ag0046 . . Lsi02g00470 Csa01g00928 Chy12g01199 Cme12g01623 . . . . . . . . . . . Cma13g00779 . Car13g00627 Car18g00205 Cpe09g00985 . Bhi08g01703 Tan05g2910 . . . . . Cla03g00327 Cam03g0344 Cec03g0335 Cco03g0348 Clacu03g0345 Cmu03g0951 Cre03g0643 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005615 0 3 0 1 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 6 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60782 PF02362 B3 2.20E-13 CL0405 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00327 Cla_Chr03 FPKM 0.483146 0.0 0.0 0.0 0.0 1.246455 0.497813 0.0 0.0 0.0