Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00331 ATGGAAGGCCAAGAGGGAACTCAGCAGCCTCATCTCGTTCTTGCTCACAAGCTTTTCCTCCTAACTCATCCCGATGTTCAAGATATTGAGAAGGTCCGTCTCACAGAGGAAGTTTTGGCCTCCGTTAAAGCAGATGATATGGCTCCGTTATACGAAACCCTAACCGGCAATTCGCTGTTGGATTTGGATCGGAGCGTGTTGGACTCGATGCGTGCGAAGAATGAGGAGGAGTTGAAGAAGCTGGACGAGAAGATTGCTGATGCTGAAGAAAACTTAGGTGAGAGTGAAGTTCGAGAAGCTCATTTGGCCAAATCACTTTTTTTCATTCGTATTGGCGATAAGGACAGAGCACTGGAGCAGCTCAAGGTAACTGAGAGCAAAACAGTTGCAGTTGGACTGAAGATGGATTTGGTTTTCCATACATTACAGCTTGGATTTTTCTATATGGATTTTGATCTGATCTCCAAAAGTATTGACAAAGCAAAAAACTTGTTCGAAGAAGGTGGTGATTGGGAAAGAAAGAATCGTCTGAAGGTGTATGAAGGCTTGTACTGCATGTCCACTCGAAACTTTAAGAAAGCAGCCAACTTGTTTTTGGATTCCATCTCAACTTTCACCACATATGAACTTTTTCCTTATGACACATTCATATTTTATACCGTTCTCACAAGCATTATATCATTGGATAGAGTGTCTCTAAAGCAAAAGGTAGTTGATGCTCCTGAGATATTGACGGTGATTGGAAAAGTCCCATATCTTTCCGACTTTTTGAACTCTTTGTATGACTGTCAATATAAATCATTTTTCTCAGCCTTTGGTAAGTGGAAACGTTCTTCAATGTCTAAAATTATGATTGACGGTCTACTAGTTTTGTGTCTCTCATTTATCTCCTTTACGTGCACGAATGCAGCTGGTCTGACAGAGCAAATAAAGTTAGACCGTTATTTGCATCCACACTTCAGGTATTACATGAGAGAGGTCAGAACTGTTGTTTATTCCCAGTTTTTGGAGTCCTATAAGAGTGTTACTATCGAAGCTATGGCAAAGGCATTTGGAGTATCTGTGGAATTTATTGATCTGGAATTATCTCGTTTTATTGCTGCGGGAAAACTTCATTGCAAGATCGATAAAGTAGCAGGTGTTCTTGAAACTAACCGCCCTGATTCAAAGAATGCTCTGTACCAAGCTACCATCAAGCAAGGAGACTTCTTACTGAACCGTATCCAGAAGTTGTCTCGTATAGGAGCTAGAAATCCACCATGTTCCCTCGTTTTGATTTTAGAGATGTTCAAGAGAAGCTCTCCGTGCAATTCAGACCTTGGGAACGTTCTTTTCAGTTCTGGATTCGAGTTGCAGATATCTACACTGGTGCTTCAGCTACGGGTGAAATTTGAGAAGGATGTTCAGAAACAGGAGGTAATGTGGGAGAATCAGCACGAACATGCCGCTGAGAAGATATATGCTATGTGCTCCGAAATGGGTGGTTTCTTCCTTAAGCTGGATTTTATGAATGAGGTTGCTCAAGTTATTGGGAAGCCGGATTTGGCTCCAGCTGCATGGGTGAAGAGGCTTGTTACACTGTGTGATCAAGCACCAGCAACACCTTTTGATGTTGTTCAACATGTTGTGGAGAAAGAACTGCACAGAAGTCTTGGTGATGTCTTTGAAACATTTGATCCTGACCCTCTTGGTTCGGCTTCGATTGCTCAGGTTCACAGAGCTAGGTTAAAGGGCGACAGGAATGATGTTGTGGTCAAGGTGCAACATCCAGGAACTGAGGATCTAATGATGACAGATATCCGTAATTTGCAAGCCTTTGCCTTATACATGCAAAAGACAGACATCAAATTTGATCTATATTCTATTGGTTACGAATTTGACTTTGAGAGGGAGGCCAATGCTATTGAAAGGATCCGACATTTTCTATATAGCAACAACAAGAAGAGTCCGGTATTGGTGCCACAAGTGATGAAGAATATTGTTACGAGGAGGGTGTTGGTGATGGAGTATATCGATGGGATCCCAATCCTCAATCTTGGTGATGAAATAGCAAAGAGAGGCATAGATGCTAGTGGCAGGATTGCTTTAGCAGCAAAGCAGAAAATTCTTAGTAGTTTGACACTGGCATATGGGCAAATGATTCTGAAGAGTGCATTGATTGATTACGGGCAAGTGAAGGATCTTCCTGACCAGTTGAGGCTTGGTTATGCTAAACTTGTTCTTCATATTGCAGATGGTGATGCAACAGGAGTAGCTGAAACCTTCAGGGAGCTTGGGATAGATACAGTAAGCAATTGTGAAAATGCACAAGAAGAACTATTTAAGTTGGCACAGGTAATGTTTGATACAAGGTTACCCCCAGGAAAGGTGTTGATGCAACCTTTCGCAGAGGACTCTTCAATAAAGAAAGTTGGTGTTCAGTCGTTTCCAGAAGAACTCTTTTCCATACTTCGGACAATTCAAATCCTTAGAGGGTTAAGTGTTGGTCTCGGGATCAATTACTCGTGCTCCGAACAATGGCGGCCCATTGCAGAAGAAGCTTTGTTGGTTTCTGGTAGGCTAGAAGGTAGGAAAACCAATACATCCCGTAGACGCGGATTCTTAACGAGATTGTTTTCAAGATCAAGCTGA 2631 42.11 MEGQEGTQQPHLVLAHKLFLLTHPDVQDIEKVRLTEEVLASVKADDMAPLYETLTGNSLLDLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFGKWKRSSMSKIMIDGLLVLCLSFISFTCTNAAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDSKNALYQATIKQGDFLLNRIQKLSRIGARNPPCSLVLILEMFKRSSPCNSDLGNVLFSSGFELQISTLVLQLRVKFEKDVQKQEVMWENQHEHAAEKIYAMCSEMGGFFLKLDFMNEVAQVIGKPDLAPAAWVKRLVTLCDQAPATPFDVVQHVVEKELHRSLGDVFETFDPDPLGSASIAQVHRARLKGDRNDVVVKVQHPGTEDLMMTDIRNLQAFALYMQKTDIKFDLYSIGYEFDFEREANAIERIRHFLYSNNKKSPVLVPQVMKNIVTRRVLVMEYIDGIPILNLGDEIAKRGIDASGRIALAAKQKILSSLTLAYGQMILKSALIDYGQVKDLPDQLRLGYAKLVLHIADGDATGVAETFRELGIDTVSNCENAQEELFKLAQVMFDTRLPPGKVLMQPFAEDSSIKKVGVQSFPEELFSILRTIQILRGLSVGLGINYSCSEQWRPIAEEALLVSGRLEGRKTNTSRRRGFLTRLFSRSS 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3882959 3893896 + ClCG03G003520.1 Cla03g00331 268831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00331 876 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 318 401 - -
Cla03g00331 876 Coils Coil 67 98 - -
Cla03g00331 876 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
Cla03g00331 876 ProSiteProfiles PCI domain profile. 190 389 IPR000717 -
Cla03g00331 876 SUPERFAMILY Protein kinase-like (PK-like) 530 694 IPR011009 -
Cla03g00331 876 CDD ABC1_ADCK3-like 527 755 - -
Cla03g00331 876 Pfam PCI domain 254 385 IPR000717 -
Cla03g00331 876 PANTHER BNAC08G11800D PROTEIN 3 273 - -
Cla03g00331 876 PANTHER BNAC08G11800D PROTEIN 302 414 - -
Cla03g00331 876 PANTHER 26S PROTESOME SUBUNIT 6 3 273 IPR019585 -
Cla03g00331 876 PANTHER 26S PROTESOME SUBUNIT 6 302 414 IPR019585 -
Cla03g00331 876 SUPERFAMILY Winged helix DNA-binding domain 313 394 IPR036390 -
Cla03g00331 876 Pfam ABC1 atypical kinase-like domain 527 753 IPR004147 -
Cla03g00331 876 Gene3D - 7 289 - -
Cla03g00331 876 Gene3D - 299 368 - -
Cla03g00331 876 SMART PINT_4 318 401 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00331 K03037 PSMD6, RPN7; 26S proteasome regulatory subunit N7 K08869 csv:101212595 753.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00331 Cla-Chr3:3882959 Cla11g01364 Cla-Chr11:27138041 3.46E-31 dispersed
Cla05g00195 Cla-Chr5:1755440 Cla03g00331 Cla-Chr3:3882959 1.93E-09 dispersed
Cla03g00331 Cla-Chr3:3882959 Cla06g00742 Cla-Chr6:9743535 2.77E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g913 . Blo16g00252 . . . Bpe13g00214 Bma06g00245 . Cmo13g00814 . . . . . . Cpe20g00328 . . . . . . . . . . . . . . . . Cone16ag0041 . . Lsi02g00475 Csa01g00933 Chy12g01194 Cme12g01617 . . Bda11g01613 . . . . . Sed08g2459 . . Cma13g00782 . Car13g00631 . . . Bhi08g01709 Tan05g2923 Cmetu12g0722 Lac10g0547 Hepe07g2153 . . Cla03g00331 Cam03g0347 Cec03g0338 Cco03g0353 Clacu03g0348 Cmu03g0954 Cre03g0647 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001915 4 2 2 2 2 1 4 2 1 2 1 1 3 2 2 3 1 6 3 1 2 2 2 2 2 1 2 2 5 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00331 Cla_Chr03 FPKM 0.162571 0.0 1.072061 1.420957 0.0 0.0 0.0 3.08587 2.254702 3.883502