Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00337 ATGAGTCAAAAGCCAGACGGCGGCGTTGAAATTGGGCCTAAGAAAAGGGGCTTTCCTTTTAGAACTATGGGCCTCCGGCCCACAAGAAAATTTGAAAGATTTGGAAGAATCGGCAGGTTGGTCGCTAGAGTTGCTTTACAGAGAGACGATGTTGAACTCGTTGCTGTTAACGATCCTTTCATCACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGTCACTGGAAGCACAGTGAGGTGAAGGTGAAGGACTCTAAGACCCTTCTTTTTGGTGAGAAGGCCGTCACTGTTTTTGGCGTCAGAAATCCGGAGGAGATCCCATGGGGTGAGACCGGTGCGGAATACATTGTAGAGTCCACTGGTGTTTTCACAGACAAAGACAAAGCTGCTGCTCATTTGAAGGGTGGTGCCAAGAAGGTTATCATCTCTGCCCCCAGCAAGGATGCCCCCATGTTTGTTGTAGGAGTCAACGAGAAGGAATACAAGCCAGAACTTAACGTTATTTCTAATGCTAGCTGCACCACCAACTGCCTTGCTCCTCTTGCAAAGGTTATCAATGACAGATTTGGCATTGTTGAGGGACTGATGACCACTGTTCACGCAATCACTGGTGGGTCTATGGATTCCACACAAAAGACTGTTGACGGGCCATCCAGCAAAGACTGGAGGGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCCGTCGGCAAAGTCCTCCCTGCCTTGAATGGGAAATTGACTGGAATGTCTTTCCGTGTTCCCACCGTCGATGTCTCTGTCGTTGATCTTACAGTGAGGTTGGAAAAGAAGGCCTCTTATGAGGACATTAAGGCAGCCATAAAGGAAGAGTCTGAGGGAAAATTGAAGGGAATTTTGGGGTACACTGAAGACGATGTTGTGTCCTCTGACTTCGTTGGTGACAGCAGGTCAAGCATCTTCGATGCCAAGGCCGGCATTGCATTGAATGATAACTTTGTGAAACTTGTCTCGTGGTACGACAATGAATACTCGTGTGGTCGACTTGATTGTCCACATCGCATCTGTCCAGTAAGATGGCTTGATGATGAGAAGGGTTTAAGGTTCCATGACGATGTTGTGGGATTTCCCACCCCTCTAGTGTGTTGTGTATTTATTTCAATTTATTCTTCAGTATTAGGTGTCAATTTTATGAAGAGATCCCGGGAATCAAAGCCCTTTTGGAATTCAAACGTTACGCTAAACTACAACCATGCACTTGGCAGTGGACATCGACCCACCACTTTCACCTTAATTATTTTGCTCACTTTTCAAGGCTCCCCATTTCTTTCAGCTACCTCCTACGGACCATACATTCCCGTTCCGTCTCACACCAGTTATCCCCTTCATTTGCCACCGACCGCCGTTCCCACTTTCTTGTCGCTTTCTTTGTCTCTGGACTTTAAAACCCTTCCTTCTTCCATTCTCACCCAGTATTCATTTTGCAAACTGTTGACTCCTTGCCTTATCTCTCAAATTCCTTGTGAATCTCTCTCCAATGGATCTGACAAATCTTATGGAAACGATATTTCAGGATTTGGAAGGATCGGGAGGTTGGTAGCAAGGGTTGCTCTCCAGAGAAACGATGTTGAACTCGTCGCTGTTAACGACCCTTTTATCACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCATGGCCAATGGAAGCATCAAGACGTGAAGGTTAAGGATTCTAAGACCCTTCTCTTTGGTGAGCAGCCTGTTACAGTTTTTGGTGTCAGGAATCCAGAGGAGATCCCATGGGGTGAGACTGGAGCTGAGTATATTGTAGAGTCAACTGGTGTTTTCACAGACAAAGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCAAAGAAGGTTATCATCTCAGCTCCCAGCAAGGATGCTCCCATGTTTGTTGTGGGAGTCAATGAGAAGGAATACAAACCAGATCTCGATGTTATATCTAATGCTAGCTGCACTACCAACTGTCTTGCTCCTCTTGCAAAGGTCATTCATGATAGATTTGGCATTGTTGAGGGTCTGATGACTACTGTTCACTCAATGACTGCCACCCAAAAGACTGTTGATGGACCATCTAGCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATCCCTAGCAGTACTGGAGCTGCTAAGGCTGTTGGCAAAGTGCTGCCTGCATTGAATGGAAAACTCACCGGTATGGCTTTCCGTGTTCCTACCGTTGATGTCTCAGTAGTTGACCTTACAGTGAGGTTGGAGAAGCCAGCATCGTATGATGATATTAAAGCTGCCATTAAGGAGGAGTCTGAGGGAAAGCTGAAAGGAATTTTGGGTTACACCGAAGATGAGGTGGTGTCCACCGATTTTTTGGGTGACAACAGGTCAAGTATTTTCGACGCCAAGGCCGGGATTGCACTGACCGAACACTTTGTGAAGCTTGTCTCGTGGTACGACAACGAGTTAGGCTACAGTACTCGTGTTATCGACTTGATTGTTCACATTGCTTCTGTCCATTAA 2571 46.36 MSQKPDGGVEIGPKKRGFPFRTMGLRPTRKFERFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHSEVKVKDSKTLLFGEKAVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPELNVISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITGGSMDSTQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKKASYEDIKAAIKEESEGKLKGILGYTEDDVVSSDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEYSCGRLDCPHRICPVRWLDDEKGLRFHDDVVGFPTPLVCCVFISIYSSVLGVNFMKRSRESKPFWNSNVTLNYNHALGSGHRPTTFTLIILLTFQGSPFLSATSYGPYIPVPSHTSYPLHLPPTAVPTFLSLSLSLDFKTLPSSILTQYSFCKLLTPCLISQIPCESLSNGSDKSYGNDISGFGRIGRLVARVALQRNDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHQDVKVKDSKTLLFGEQPVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPDLDVISNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSMTATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDDIKAAIKEESEGKLKGILGYTEDEVVSTDFLGDNRSSIFDAKAGIALTEHFVKLVSWYDNELGYSTRVIDLIVHIASVH 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3926798 3934085 + ClCG03G003570.2 Cla03g00337 268837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00337 856 Gene3D - 527 850 - -
Cla03g00337 856 Gene3D Dihydrodipicolinate Reductase; domain 2 672 837 - -
Cla03g00337 856 Gene3D Dihydrodipicolinate Reductase; domain 2 176 346 - -
Cla03g00337 856 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 197 IPR036291 -
Cla03g00337 856 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 32 349 IPR020831 GO:0016620
Cla03g00337 856 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 527 847 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cla03g00337 856 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 34 349 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cla03g00337 856 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 671 678 IPR020830 GO:0016620
Cla03g00337 856 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 176 344 - -
Cla03g00337 856 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 508 853 IPR020831 GO:0016620
Cla03g00337 856 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 508 853 - -
Cla03g00337 856 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 678 835 IPR020829 GO:0016620
Cla03g00337 856 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 182 344 IPR020829 GO:0016620
Cla03g00337 856 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 672 835 - -
Cla03g00337 856 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 526 693 IPR036291 -
Cla03g00337 856 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 175 182 IPR020830 GO:0016620
Cla03g00337 856 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 694 710 IPR020831 GO:0016620
Cla03g00337 856 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 667 685 IPR020831 GO:0016620
Cla03g00337 856 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 751 768 IPR020831 GO:0016620
Cla03g00337 856 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 632 645 IPR020831 GO:0016620
Cla03g00337 856 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 791 806 IPR020831 GO:0016620
Cla03g00337 856 SMART gp_dh_n_7 34 177 IPR020828 GO:0051287
Cla03g00337 856 SMART gp_dh_n_7 527 673 IPR020828 GO:0051287
Cla03g00337 856 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 32 349 - -
Cla03g00337 856 Gene3D - 34 349 - -
Cla03g00337 856 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 527 626 IPR020828 GO:0051287
Cla03g00337 856 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 34 130 IPR020828 GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00337 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101213319 622.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01828 Cla-Chr2:33432399 Cla03g00337 Cla-Chr3:3926798 7.10E-135 dispersed
Cla03g00337 Cla-Chr3:3926798 Cla11g00654 Cla-Chr11:7557128 6.96E-178 dispersed
Cla03g00337 Cla-Chr3:3926798 Cla09g02216 Cla-Chr9:39779354 3.02E-159 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g920 . . . . . . . . Cmo13g00818 Cmo18g00195 . . . . . Cpe20g00323 . . . . . . . . . . . . . . . . Cone16ag0036 . . Lsi02g00479 Csa01g00941 Chy12g01188 Cme12g01610 . . . . . Bpe15g00204 Bma03g01272 . . . . Cma13g00787 Cma18g00218 Car13g00636 Car18g00213 Cpe09g00978 . Bhi08g01716 Tan05g2926 Cmetu12g0879 . Hepe07g2148 . . Cla03g00337 Cam03g0352 Cec03g0343 Cco03g0358 Clacu03g0353 Cmu03g0958 Cre03g0651 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015008 0 0 0 0 0 1 2 1 1 0 1 1 1 0 0 1 1 0 2 1 0 0 0 1 1 0 0 1 0 0 16
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00337 Cla_Chr03 FPKM 36.166359 36.403194 32.801323 31.041479 29.081398 34.189049 30.319403 47.817894 46.552822 40.912361