Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00341 ATGGCTGCCCATTCCGTTGATTCCCGCAGCGGTTTCTGTCCTCAAACCAAGATTTACAAGAGCCTCCGACCACCCTTCTCGCTTCCGCCGTTATCTCAGCCACTCACCGTTGCCGGACATGCTCTTTCGGTTCTCCGATCATCTCTTCCTCCGCCGAACACTGCTGCTCTCGTCGACTCCGACTCCGGCGTCACTGTCTCTTACGCCCTTTTCCTCCGTCAAATCCGAAACCTCACCTCTAACCTTAGAGCTCTTTACTCCTTCTCCAATGGTCAAGTGGCTTTTATTCTTTCACCGACTTCTCTGCAAATTCCTGTGTTGTATTTCGCTCTCTTATCTCTCGGCGTTATTGTCTCTCCGGCTAATCCAATCAGTTCCGAATCGGAGATTGCTCACCAGGTTAGTCTCTGTAAACCGGTCATTGCCTTCGCTACTTCCTCAACGGCGTCCAAGCTCCCGAGGCTTCCACTTGGTACTGTACTGATAGATTCGCCGGAGTTTCTATCTATGATAACTGAAATTAGTCGATTGGAAGGAGTAAACGATGGCATTGTGGACGGAGAAATCAATCAAAACAACTCCGCGGCGATTCTTTACTCTTCAGGGACTACCGGACGAGTGAAAGGCGTCTTACTCTCTCACCGGAACCTCATATCGGCGATCTCTGGGGTTCAAGTATTGGAGAAAACGCCCGTCGAAGGAGAGATTGAGCCACATCCCGTTGCTCTGTGTCTATTACCTCTGTTCCATGTTTTCGGGTTCTTTATGTTGTTTCGATCGATTTCAGAGGGCAATACATTGGTTCTGATGCGTAAATTCGATTTCCAGAGGATGTTAGGAGCAGTGGAGAAGTATAGGGTTACATACATTCCGGTTTCTCCGCCGCTGGTGGTGGCGATGGCCAAATCGGAGTTGGTGGCTAAGTATGATCTCAGCTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGTAAAGAAGTCATTGATAAATTCCATCTCAGGTTTCCCAACGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTTCAGGAGCGGCATCAAGAACTGTGGGGCCTGAAGAATGCAGTAATGCAGGTTCAGTAGGTCGCCTATCTGAAAATATGGAAGCCAAAATAGTTGATCCTTCGTCTGGAGAAGCCTTACCTCCTGGTCACAAAGGAGAACTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAAAGGGCAACCGCTGAAACCTTGCATCCTGAGGGATGGCTAAAGACTGGTGACCTTTGTTACTTTGATTCCGATGGATTTCTCTACATCGTTGATCGATTAAAAGAATTGATCAACTATCCTGATGAAGAAGCCGGAGAGATTCCATTAGCTTATGTGGTTAGAAAGCCCGAAAGTAATATCAGTGCGACTCAATATAAACAAAATAAGGCAAAAGTTTATGTCTTACATCGGAATCACTTTAACGCCGCCCATTTAGTTGATCTTCGAAGCGGTTTCTGTCCTCAGACGCAGATTTTCCACAGCCTCCGACCACCGCTCTCACTTCCACCATTATCTCAGCCTCTCTCCGTCACCGAACACGCTCTTTCTCTCCTTCAATCATCCCCTCCCCCTGCAAACGCCACCGTTCTCATCGACTCCAATTCCGGCTTCCATCTCTCCTACGCCATTTTCATCCGTCAAATTCGAACCCTCGCCTCAAATCTCAAAGCTTTAACCTCCCTCTCCAATGGACAAGTGGCATTTATTCTCGCTCCTACTTCTCTGCAAGTCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGTGTCATTCTCTCTCCGGCAAATCCAACCGGTTCCGAATCAGAGATTTCTCATCAGATTCGACTCAGTAAACCGGTCATTGCCTTCGCTACATCCTCAACGGCGTCCAAGCTCCCTAGGTTTCGATTCGGAACCGTCCTGATCGATTCACCTCATTTCCTCTCCATGATGACTGAAATCAACAGATCCGATCGTCTCACCGACATCAAAATCGACCAGTCCGACTCGGCGGCGATTCTGTACTCGTCAGGTACCACAGGGCGAGTGAAAGGCGTGTTACTGAGTCATCGGAATCTTATTGCGGTGAACTCAGGGCGTACTGCTCTTCAATCGGAGATCAAAGAAGGAGAAATGGAGCCACATCCGGTTTCTCTGTGTCTGTTGCCTTTGTTCCATGTTTTCGGATTCGTGATATTGCTTCGAGCGATTTCGCGAGGAGAAACGTTGGTTCTGATACAGAGATTCGATTTCGAAGCGATGCTAAGAGCAGGTTATGTACATCCCTGTTTCTCCGCCGCTTGTGGTGGCGATGCGAAGTCGGAACTGGTGGCGAAATACGATCTCAGTTCTCTTAAAGTTTTGGGGTGCGGCGGCGCTCCCCTTGGGAAAGAAGTGATCGATAAATTCCATCAGAAATTGCCCAACGTTGAAATTGTCCAGGGATATGGCTTGACAGAGAGTACAGCGGGGGCAGCAAGAACTCTGGGGCCTGAGGAAACCAACAACACCAATTCAGTAGGTCGCTTATCTGAAAATATGGAAGCCAAGATAGTGGATCCTGCATCTGGAGAGGCCTTACCTCCTGGCCACAAAGGAGAGCTTTGGCTGCGAGGTCCTACTGGTGATCTTTGCTATTTTGATTCTGATGGATTCCTGTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCAGAATTGGAACATTTGCTTCAATCCAACCCTGAAATAATTGACGCTGCCGTGATACCCTATCCTGATGAAGAAGCTGGAGAGATTCCTATGGCTTATGTTGTTAGAAAGCCTGGAAGCAATATCACCGAGGCCCAAGTTGCGCCATACAAGAAAATTCGACGAGTTTCTTTTATCGACGCAATCCCGAAATCGCCCGCAGGGAAGATTCTAAGGAGGGAGCTTGCGAAACATGCTCTCTCACATGGTTCTAATAAGTTGTAA 3015 47.89 MAAHSVDSRSGFCPQTKIYKSLRPPFSLPPLSQPLTVAGHALSVLRSSLPPPNTAALVDSDSGVTVSYALFLRQIRNLTSNLRALYSFSNGQVAFILSPTSLQIPVLYFALLSLGVIVSPANPISSESEIAHQVSLCKPVIAFATSSTASKLPRLPLGTVLIDSPEFLSMITEISRLEGVNDGIVDGEINQNNSAAILYSSGTTGRVKGVLLSHRNLISAISGVQVLEKTPVEGEIEPHPVALCLLPLFHVFGFFMLFRSISEGNTLVLMRKFDFQRMLGAVEKYRVTYIPVSPPLVVAMAKSELVAKYDLSSLQILGCGGAPLGKEVIDKFHLRFPNVEIIQGYGLTESSGAASRTVGPEECSNAGSVGRLSENMEAKIVDPSSGEALPPGHKGELWLRGPGIMKGYVGDERATAETLHPEGWLKTGDLCYFDSDGFLYIVDRLKELINYPDEEAGEIPLAYVVRKPESNISATQYKQNKAKVYVLHRNHFNAAHLVDLRSGFCPQTQIFHSLRPPLSLPPLSQPLSVTEHALSLLQSSPPPANATVLIDSNSGFHLSYAIFIRQIRTLASNLKALTSLSNGQVAFILAPTSLQVPVLYFALLSLGVILSPANPTGSESEISHQIRLSKPVIAFATSSTASKLPRFRFGTVLIDSPHFLSMMTEINRSDRLTDIKIDQSDSAAILYSSGTTGRVKGVLLSHRNLIAVNSGRTALQSEIKEGEMEPHPVSLCLLPLFHVFGFVILLRAISRGETLVLIQRFDFEAMLRAGYVHPCFSAACGGDAKSELVAKYDLSSLKVLGCGGAPLGKEVIDKFHQKLPNVEIVQGYGLTESTAGAARTLGPEETNNTNSVGRLSENMEAKIVDPASGEALPPGHKGELWLRGPTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEEAGEIPMAYVVRKPGSNITEAQVAPYKKIRRVSFIDAIPKSPAGKILRRELAKHALSHGSNKL 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3971460 3985558 - ClCG03G003610.1 Cla03g00341 268841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00341 1004 Gene3D - 906 998 IPR045851 -
Cla03g00341 1004 Pfam AMP-binding enzyme C-terminal domain 919 986 IPR025110 -
Cla03g00341 1004 Gene3D - 519 905 IPR042099 -
Cla03g00341 1004 Gene3D - 34 447 IPR042099 -
Cla03g00341 1004 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 451 - -
Cla03g00341 1004 ProSitePatterns Putative AMP-binding domain signature. 685 696 IPR020845 -
Cla03g00341 1004 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 513 993 - -
Cla03g00341 1004 Pfam AMP-binding enzyme 543 885 IPR000873 -
Cla03g00341 1004 Pfam AMP-binding enzyme 52 450 IPR000873 -
Cla03g00341 1004 SUPERFAMILY Acetyl-CoA synthetase-like 545 998 - -
Cla03g00341 1004 SUPERFAMILY Acetyl-CoA synthetase-like 51 475 - -
Cla03g00341 1004 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 513 993 - -
Cla03g00341 1004 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 26 451 - -
Cla03g00341 1004 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00341 Cla-Chr3:3971460 Cla05g01577 Cla-Chr5:26748390 3.17E-118 dispersed
Cla03g00341 Cla-Chr3:3971460 Cla09g00323 Cla-Chr9:3124225 9.32E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00341 K01904 - csv:101211791 818.92