Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00346 ATGGGAAATGGCGGCGAAAGAATGGCGTTGGCTGTTTGCAGCGACAGGAACATGGGATTGGGGATTACTATTTGGGATGTGAAAACAGGCCAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTCCATACGGTTTGATTTGCTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGAGTCCGTTGGTGGTGGATCCATCTTCATTTGGTCCCTCAACAAGCCCATTGGACCACTTGCCTCAACAAAGGACAGTGTATATCTTGCAGGCGGAACTCATTCGGGAAATATTCATCTTTGGGAGGTTGGTAGTGGTAAATTGCTCAAGCTTTGGAGTGGTCATCATAAACCTATAAAACGTGTCCTATTTTCTTGGGATGATTCATTTCTCATTACTGGTTCAGCCGACGGAATGATTTGTGTCTGGTCCATGATTGGTTTGCTGGATGTGGAACTTGTGGGAAGCTCACAGCCAATAGTGTATTGTCTCATGGAACATAAGTCATCTTTAACTGGTCTACTCACCATGTCTGGCTGCTCGATGTCGATAATCATTTCAAGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATCTGATGTCAGGAATGATTAGGGGAACTCAAGCTCATATAGAGGGGATCACTGCAATTGTTCTTCATCCAACTGAGCAAGTTCTGTTCTCTGGGATCGTGGACGGGCAAATTTTTGCTAGCAGGCTTGAATTTGGATTTGACAATTGCATTAACATTAAAGAAAACCAACTACTTGCACCAAAAGGACACAAAGGAGCTATTACTGCTCTGGCTTTCAGTCAGATGGATCTAATTTCTGCATCTGAGGATTGCACCGTCTGCATATGGGACATCAGCAGTCAGAGGATAATACAAAAGCTTGACCATAAGAAAGGGAGAATAACCAATTTGGTAGCAGTTCCACAGTCGTCCTTGATCTCTACATCAATTCGTAAGAGAGTCTTGAATCAATTCTCCGTGTCCCCCCTCGACAAGTATCCTCAGCCTGACAATTTGTTGAAGAGCACGATACCTCTCTTTCCCTCCCTCCAACCTCTCCGAGAGAATCTGAATTCCATCGGATTCACGAGTACTGGCTCATTGAATCAGCAAATACTTGATACGAAGACTGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGGCGAATGTGGGCTTCCAGAATGACAAAGCAAGTGATGGACATGAACAACCAACTTCAATCACGGTTAGTAGACATGATGCGGATTCGATTGTTTGGACCTGCAAAAATTAGCTCATCCTCCAAGAAACAAAAAGATGTAAGAGATCGAGTTGCAAGGACGAGGAAGAAGCCATTGCAAAGTGAGAGAGAGATGGAAAAAAGCAATGGTAAAGGTCTGCTTGGGCAGCTGAAGAAGGTTGTTTTGGCTTACAGTGGTGGCTTGGACACATCAGTCATTGTCCCATGGCTAAGGGAGAATTATGGCTGTGAAGTTGTATGTTTTACTGCAGATGTTGGTCAAGCTATAGCAAGTGGGGCTTCTAAATTGGTGGTAAAGGATTTGAGGGAAGAATTTGTAAAAGACTTCATATTTCCTTGTTTACGTGCTGGTGCAATTTATGAAAGAAAATACCTTCTTGGAACGTCAATGGCTCGTCCTGTTATAGCAAAGGCGATGGTGGATGTTGCGAATGAAGTTGGGGCTGATGCAGTTTCTCATGGATGCACTGGAAAAGGAAATGATCAAGTACGGTTTGAATTGGCATTTTTTGCTCTAAATCCCAATCTAAAAGTGGTGGCACCATGGAGAGAATGGGATATTACTGGGAGACAAGATGCTATTCAGTATGCTAAGGATCATAATATACCTATTCCAGTCACCAAGGAATCAATTTACAGTCGAGACGCCAACTTGTGGCATATTAGTCACGAGGGAGATGTTTTGGAGGATCCAGCAAATGAACCTAAAAAGGAGATGTATATGATATCAACGGATCCAGAAGATGCACCAGATCAACCTGAATATGTGGAAATAGGGATTGTGGGAGGTGTCCCTGTATCCGTCAATGCCCAGGTTCTTTCACCACCTTCTCTTCTAGCCAAAGTAAACGAAATTGGTGGAAAGCATGGAATTGGAAGGATCGACATGGTCGAAAACCGTCTGGTGGGCATGAAAAGCAGAGGCGTCTACGAAACCCCAGGAGGAACCATCCTTTTCGCAGCCACCCGTGAGCTCGAGTCTCTAACACTTGACCGTGAGACGATTCAAGTGAAAGACTCATTGGCTCTCAAATATGCAGAGCTGGTTTATGCAGGAAGATGGTTCGACCCTCTTCGTGAATCCATGGATGCTTTCATGGAGAAGATCACAGAGACCACCACTGGCTCAGTCACTCTCAAGCTCTACAAGGGTTCCGTCCATGTGGCCGGCCGCCGGAGTTTGTACAGTCTTTATAGGGAAGATATCTCCTCCTTTGAAAATGGGCAGATTTACAATCAGGCTGATGCTGCTGGTTTCATTCGCCTTTACGGCCTTCCCACCAGAATTCAATGCCCAAGCAGGAAGGCAATCCTCCTCACTGTCAAACTAGACAATGAATCAAACCAGTCAGGCACAGTATCATTGAAGAAGTTGTCATCTAGTTTGAGAGTTTGA 2673 44.59 MGNGGERMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGLICLRNEFLVASQTRKEESVGGGSIFIWSLNKPIGPLASTKDSVYLAGGTHSGNIHLWEVGSGKLLKLWSGHHKPIKRVLFSWDDSFLITGSADGMICVWSMIGLLDVELVGSSQPIVYCLMEHKSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLFSGIVDGQIFASRLEFGFDNCINIKENQLLAPKGHKGAITALAFSQMDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSPLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRKKPLQSEREMEKSNGKGLLGQLKKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQAIASGASKLVVKDLREEFVKDFIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVANEVGADAVSHGCTGKGNDQVRFELAFFALNPNLKVVAPWREWDITGRQDAIQYAKDHNIPIPVTKESIYSRDANLWHISHEGDVLEDPANEPKKEMYMISTDPEDAPDQPEYVEIGIVGGVPVSVNAQVLSPPSLLAKVNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFAATRELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMEKITETTTGSVTLKLYKGSVHVAGRRSLYSLYREDISSFENGQIYNQADAAGFIRLYGLPTRIQCPSRKAILLTVKLDNESNQSGTVSLKKLSSSLRV 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4022547 4035588 - ClCG03G003660.1 Cla03g00346 268846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00346 890 MobiDBLite consensus disorder prediction 440 467 - -
Cla03g00346 890 TIGRFAM argG: argininosuccinate synthase 478 855 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cla03g00346 890 ProSitePatterns Trp-Asp (WD) repeats signature. 277 291 IPR019775 -
Cla03g00346 890 Pfam WD domain, G-beta repeat 258 290 IPR001680 GO:0005515
Cla03g00346 890 Pfam WD domain, G-beta repeat 109 146 IPR001680 GO:0005515
Cla03g00346 890 Gene3D - 240 338 IPR015943 GO:0005515
Cla03g00346 890 MobiDBLite consensus disorder prediction 436 467 - -
Cla03g00346 890 Gene3D - 4 238 IPR015943 GO:0005515
Cla03g00346 890 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 11 307 IPR011047 -
Cla03g00346 890 Pfam Arginosuccinate synthase 480 855 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cla03g00346 890 Gene3D Single helix bin 827 860 - -
Cla03g00346 890 ProSitePatterns Argininosuccinate synthase signature 2. 580 591 IPR018223 GO:0004055|GO:0005524|GO:0006526
Cla03g00346 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 209 IPR001680 GO:0005515
Cla03g00346 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 114 147 IPR001680 GO:0005515
Cla03g00346 890 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 477 668 - -
Cla03g00346 890 Hamap Argininosuccinate synthase [argG]. 476 861 IPR023434 GO:0004055
Cla03g00346 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 299 IPR001680 GO:0005515
Cla03g00346 890 SMART WD40_4 253 290 IPR001680 GO:0005515
Cla03g00346 890 SMART WD40_4 107 146 IPR001680 GO:0005515
Cla03g00346 890 SMART WD40_4 203 241 IPR001680 GO:0005515
Cla03g00346 890 SMART WD40_4 66 104 IPR001680 GO:0005515
Cla03g00346 890 SMART WD40_4 159 200 IPR001680 GO:0005515
Cla03g00346 890 ProSitePatterns Trp-Asp (WD) repeats signature. 187 201 IPR019775 -
Cla03g00346 890 ProSitePatterns Argininosuccinate synthase signature 1. 482 490 IPR018223 GO:0004055|GO:0005524|GO:0006526
Cla03g00346 890 CDD Argininosuccinate_Synthase 479 852 IPR023434 GO:0004055
Cla03g00346 890 Gene3D Argininosuccinate synthetase, chain A, domain 2 527 817 IPR024074 GO:0004055
Cla03g00346 890 PANTHER ARGININOSUCCINATE SYNTHASE 475 856 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cla03g00346 890 PRINTS G protein beta WD-40 repeat signature 133 147 IPR020472 -
Cla03g00346 890 PRINTS G protein beta WD-40 repeat signature 187 201 IPR020472 -
Cla03g00346 890 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Cla03g00346 890 Gene3D HUPs 478 636 IPR014729 -
Cla03g00346 890 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 635 856 IPR024074 GO:0004055
Cla03g00346 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 114 147 - -
Cla03g00346 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00346 K01940 argG, ASS1; argininosuccinate synthase [EC:6.3.4.5] K14829 csv:101212515 798.505
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00346 Cla-Chr3:4022547 Cla01g01766 Cla-Chr1:32581519 1.59E-07 dispersed
Cla03g00346 Cla-Chr3:4022547 Cla03g00347 Cla-Chr3:4036767 0 tandem
Cla05g02050 Cla-Chr5:32212599 Cla03g00346 Cla-Chr3:4022547 3.87E-39 transposed
Cla07g00963 Cla-Chr7:25820777 Cla03g00346 Cla-Chr3:4022547 1.97E-26 transposed
Cla03g00346 Cla-Chr3:4022547 Cla06g01732 Cla-Chr6:30873877 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00493 Csa01g00955 Chy12g01177 . . . . . . . . . Sed08g2444 . . . . . . Cpe09g00968 . Bhi08g01467 Tan05g2944 Cmetu07g1959 . . . . Cla03g00346 Cam03g0364 Cec03g0353 . . Cmu03g0970 Cre03g0662 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014470 0 3 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00346 Cla_Chr03 FPKM 0.831912 0.605762 0.372153 0.464583 0.0 0.0 0.0 1.056873 0.79539 0.869613