Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00350 ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGTAGCAATAGCAAAAGATCTTCGTCCTCTGAGGATAAGCCATCGTCACCCAAGCGTCAAAAGGTGGAAAATGGGTGTGGCTCAGAGAAATCGATGCCGGCGGCGGAGAATTCTAAGGAATTATGCACCGCGCCGACTGTGGATCCCGGAGAGCATGGACCTGGCGGTGGTCCGATCGCTGGAGTTGACGTGGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCCGTCGCTCTTACCACTCCTATCGCCGAGGGAACTTCGCTGGTAGGGGATAAGCCTAGGAGTTCATTTTCATCATGGAGTCACTATGCTGCGAAGCAGAATCCAAATTTTGAAACGACAACTCCTTGGTGTAGGCTTCTCTCACAGTTCGGTCAGAACTCCAATGTTGATATTTTCTCGTCAAATTTTACCATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACACAATTAGTGGGACACTTTGCAAGATCAAGCACACTCAGCGTGATGGTAGTGCTGTGGCTGTGCTTGAAAGTACGGGAGGCAAGGGATCGGTGATGGTTAATGGGTTGACTGTCAAGAAGAGCACCAACTGTGTGCTAAATTCGGGTGACGAGGTGGTCTTTGGTGCTTTGGGGAATCATGCTTATATATTTCAACAACTTATGAATGAGGTTTCAGTTAAAGGTCTAGATGTTCAGAGTGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGCGATCCGTCTGCTGTGGCCGGGGCCTCGATCTTGGCATCTCTTTCAAGTCTCAGGCAGGATATTTCACGTTGGAAGCCTCCTTCTCAGACCAGCAGTAAAACACACCAAGGTGCTGAACTTCCTTCTAAATCTGTTGTTCATGATGCAATGGAACTTGAAATTGATGCTCTTGAAGGCAACTCAAATCCAGAAGTACGAAATGATAAAGCTGTAGACTCAAGCACAACTAACAGGAATCTTCATCCCGGCTCCAATCCAGATGCTGTCATAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTGATAGGGCCTTTGTTCAGGATGTTAGCTCAGTCAACTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGAAAGAAACCAGTGGATTGGAGAGTTGCAGCCAGCATCAACTTCGGGAATGTCTTTGCGGTGTGCAGCCTTTAAAGAAGATGTTCTTGCAGGGATTGTTGATGGAAGGGACTTAGAAGTTTCATTTGACAACTTTCCATACTATTTGAGTGAGAATACGAAGAATGTGCTTATTGCTGCTTCTTTCATACACTTGAAGCATAAAGAACATTCAAAGTATACCTCAGAATTAAATACGGTGAATCCACGAATTCTACTTTCTGGTCCCGCTGGTTCAGAGATATATCAAGAGATGCTAGCAAAGGCACTTGCCAACTACTATGGTGCTAAGCTACTCATATTTGATAGCCATTCATTTTTGGGCGGTTTATCATCAAAGGAAGCAGAGCTGTTGAAGGATGGAATAAATGCAGCAAAGTCTTGTAGCTGTTCTAAACAGAGTATGGCATCTACTGAGACCACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACTCCAAGCTCTTCAAATGCTACTTTATTCACCCCTGATTCCCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAGATTTATAGGTTCAGCTTCTGGGGGGATATATCCTACAACATCTCCCTCAAGGGGCCCACCCAATGGAACTCGTGGAAAGGTTGTATTAACTTTTGACAACAACTCTTCGTCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTAATGCAACCGATCTTCGTTTGGAGAACTCTGGCGTGGAAGAATTGGATAAGATACTTATTGATATTTTATTTGAGGCGGTATTTAGTGAAAGCCGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCACTTGTCGGAAATTTAGACTCCTATTCTACTTTTAAAATTAGACTGGAAAAGCTTCCTGACAATGTTATAGTAATTGGCTCTCATACTCATACTGACAACCGCAAAGAGAAGTCGCATCCTGGTGGCCTGCTTTTCACGAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGACTACATGACAGAGGAAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTGTTTCCCAATAAAGTTACAATCCATATGCCGCAGGATGAGGGCCTTCTTGTGTCATGGAAACACCAGTTAGAACGAGATGCTGAAACTCTCAAAATGAAGGGAAATCTGAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGGATGGATTGTGAAGGTTTAGAGACATTATGCATCAAGGATCAAACACTTACGAACGAGAGTGCGGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAGTTCTTTTGTCTAGTGAGAGCATTCAATACGGGATAAGCATCTTACAGGCTATCCAGAATGAATCTAAGTGCTTGAAGAAGTCACTTAAGGATGTTGTCACGGAGAATGAATTTGAGAAAAGGCTTTTAGCAGACGTTATCCCACCCAGTGATATAGGAGTCACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGCCATGCAAAGGTATTCTGTTATTTGGCCCACCTGGAACAGGTAAGACGATGCTTGCAAAAGCTGTTGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACGTCAAAGTGGTTCGGTGAGGGTGAGAAGTATGTAAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGTCGAAGAGAAAATCCAGGAGAACATGAGGCCATGCGGAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAGGACACAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGACCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCAAACAGAGCAAAAATACTTAAAGTTATTTTGGCAAAAGAAGATTTGTCTCCAGAATTTGATTTTGATTCGGTTGCTAGTATGACAGATGGATACTCTGGGAGTGACCTTAAGGAGCGAGCTGCAGCTCTTGCAGATGGCAGGCCTGCTCCAGCCCTTAGTGGAAGTGAGGATATTCGGCCTCTAAATATGGATGACTTTAAATATGCTCATGAACGGGTATGTGCGAGTGTTTCGTCGGAGTCTGTAAACATGACAGAGCTGTTACAGTGGAACGAGCTCTACGGTGAAGGGGGTTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATCGTTGCTGCCGGCGGTAAGCCTCCGATCACCCAATTTGGAATTCGCTATTATAATTATCATATGAAAACAACGGATGTTAACTTGTTTAACTTTTTGAATAGAAGGAAATCACATCAGTTCGCAATGGCGGTCTCATTGAGCGATGTTAAGTCGGCAGCCGGTCTAAAAAAGCTCGACGAGTACCTGCTCAGTCGTAGTTACATTTCTGGGTATCAAGCTTCAAAAGATGATATCGCTGTTTACGAAGCTATCTCCAAACCCGTTTCCAGCGAATATGTTAACGTATCTAGGTGGTTCAATCACATCGAAGCACTCATGAGAGCCTCTGCTGGGTTTGGAGAGGGTTCTGGCGTTAAGTTCGATGCAGAAGCAATCGCAACCCCACCAGCTGCCGATGCTAAGGCTAGTGCTGATGACGACGATGATGACGATATGGATCTGTTTGGTGAAGAGACTGAAGAGGAAAAGAAGGCTGCCGAAGAGCGCGCAGCTGCCATCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTTTGATGGATATCAAGCCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCCGTAAGAAGTGTTCAGATGGAAGGATTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTGCAGATAATGCTCACAATTGTTGACGACCTTGTGTCTGTTGACAATCTCATTGAGGAACATTTGACAGTTGAACCAATAAACGAGCATGTCCAGAGTTGTGATATTGTTGCCTTCAACAAAATCTAA 4416 43.46 MVSTRRSGSLSGSNSKRSSSSEDKPSSPKRQKVENGCGSEKSMPAAENSKELCTAPTVDPGEHGPGGGPIAGVDVGEGVSSLKEDAAPAAVALTTPIAEGTSLVGDKPRSSFSSWSHYAAKQNPNFETTTPWCRLLSQFGQNSNVDIFSSNFTIGSSRGCNFPLKDHTISGTLCKIKHTQRDGSAVAVLESTGGKGSVMVNGLTVKKSTNCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSSKTHQGAELPSKSVVHDAMELEIDALEGNSNPEVRNDKAVDSSTTNRNLHPGSNPDAVIEAGNVKLSGVNDLIGPLFRMLAQSTSCKLKLSKSICKQVMEERNQWIGELQPASTSGMSLRCAAFKEDVLAGIVDGRDLEVSFDNFPYYLSENTKNVLIAASFIHLKHKEHSKYTSELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGINAAKSCSCSKQSMASTETTKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVRFIGSASGGIYPTTSPSRGPPNGTRGKVVLTFDNNSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCNATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNLDSYSTFKIRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNESKCLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKERAAALADGRPAPALSGSEDIRPLNMDDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFIVAAGGKPPITQFGIRYYNYHMKTTDVNLFNFLNRRKSHQFAMAVSLSDVKSAAGLKKLDEYLLSRSYISGYQASKDDIAVYEAISKPVSSEYVNVSRWFNHIEALMRASAGFGEGSGVKFDAEAIATPPAADAKASADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINEHVQSCDIVAFNKI 1471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4058352 4075815 - ClCG03G003700.2 Cla03g00350 268850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00350 1471 MobiDBLite consensus disorder prediction 316 346 - -
Cla03g00350 1471 MobiDBLite consensus disorder prediction 282 301 - -
Cla03g00350 1471 SUPERFAMILY eEF-1beta-like 1379 1471 IPR036219 -
Cla03g00350 1471 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 1460 1471 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cla03g00350 1471 Pfam FHA domain 153 222 IPR000253 GO:0005515
Cla03g00350 1471 Gene3D - 1093 1167 - -
Cla03g00350 1471 SMART AAA_5 957 1094 IPR003593 -
Cla03g00350 1471 MobiDBLite consensus disorder prediction 1341 1355 - -
Cla03g00350 1471 Gene3D - 1375 1471 IPR014717 -
Cla03g00350 1471 SUPERFAMILY SMAD/FHA domain 131 229 IPR008984 GO:0005515
Cla03g00350 1471 CDD FHA 149 232 IPR000253 GO:0005515
Cla03g00350 1471 MobiDBLite consensus disorder prediction 537 583 - -
Cla03g00350 1471 Pfam EF-1 guanine nucleotide exchange domain 1384 1471 IPR014038 GO:0003746|GO:0006414
Cla03g00350 1471 MobiDBLite consensus disorder prediction 1 21 - -
Cla03g00350 1471 MobiDBLite consensus disorder prediction 326 343 - -
Cla03g00350 1471 CDD EF1B 1380 1471 IPR014038 GO:0003746|GO:0006414
Cla03g00350 1471 Gene3D - 131 240 - -
Cla03g00350 1471 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 388 1205 - -
Cla03g00350 1471 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 362 - -
Cla03g00350 1471 SMART EF1_GNE_2 1382 1471 IPR014038 GO:0003746|GO:0006414
Cla03g00350 1471 MobiDBLite consensus disorder prediction 1 76 - -
Cla03g00350 1471 CDD AAA 940 1092 - -
Cla03g00350 1471 Gene3D - 938 1180 IPR027417 -
Cla03g00350 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 938 1180 IPR027417 -
Cla03g00350 1471 SUPERFAMILY GST C-terminal domain-like 1254 1311 IPR036282 -
Cla03g00350 1471 Gene3D - 1241 1317 - -
Cla03g00350 1471 ProSitePatterns AAA-protein family signature. 1064 1083 IPR003960 GO:0005524|GO:0016887
Cla03g00350 1471 Coils Coil 1354 1374 - -
Cla03g00350 1471 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 388 1205 - -
Cla03g00350 1471 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 77 362 - -
Cla03g00350 1471 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 1346 1354 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cla03g00350 1471 MobiDBLite consensus disorder prediction 282 299 - -
Cla03g00350 1471 Pfam ATPase family associated with various cellular activities (AAA) 961 1090 IPR003959 GO:0005524|GO:0016887
Cla03g00350 1471 MobiDBLite consensus disorder prediction 22 36 - -
Cla03g00350 1471 MobiDBLite consensus disorder prediction 1334 1367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00350 Cla-Chr3:4058352 Cla09g00557 Cla-Chr9:5145467 0 dispersed
Cla03g00350 Cla-Chr3:4058352 Cla07g00737 Cla-Chr7:20540932 2.17E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00350 - - csv:101214766 2214.88