Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00350 | ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGTAGCAATAGCAAAAGATCTTCGTCCTCTGAGGATAAGCCATCGTCACCCAAGCGTCAAAAGGTGGAAAATGGGTGTGGCTCAGAGAAATCGATGCCGGCGGCGGAGAATTCTAAGGAATTATGCACCGCGCCGACTGTGGATCCCGGAGAGCATGGACCTGGCGGTGGTCCGATCGCTGGAGTTGACGTGGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCCGTCGCTCTTACCACTCCTATCGCCGAGGGAACTTCGCTGGTAGGGGATAAGCCTAGGAGTTCATTTTCATCATGGAGTCACTATGCTGCGAAGCAGAATCCAAATTTTGAAACGACAACTCCTTGGTGTAGGCTTCTCTCACAGTTCGGTCAGAACTCCAATGTTGATATTTTCTCGTCAAATTTTACCATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACACAATTAGTGGGACACTTTGCAAGATCAAGCACACTCAGCGTGATGGTAGTGCTGTGGCTGTGCTTGAAAGTACGGGAGGCAAGGGATCGGTGATGGTTAATGGGTTGACTGTCAAGAAGAGCACCAACTGTGTGCTAAATTCGGGTGACGAGGTGGTCTTTGGTGCTTTGGGGAATCATGCTTATATATTTCAACAACTTATGAATGAGGTTTCAGTTAAAGGTCTAGATGTTCAGAGTGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGCGATCCGTCTGCTGTGGCCGGGGCCTCGATCTTGGCATCTCTTTCAAGTCTCAGGCAGGATATTTCACGTTGGAAGCCTCCTTCTCAGACCAGCAGTAAAACACACCAAGGTGCTGAACTTCCTTCTAAATCTGTTGTTCATGATGCAATGGAACTTGAAATTGATGCTCTTGAAGGCAACTCAAATCCAGAAGTACGAAATGATAAAGCTGTAGACTCAAGCACAACTAACAGGAATCTTCATCCCGGCTCCAATCCAGATGCTGTCATAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTGATAGGGCCTTTGTTCAGGATGTTAGCTCAGTCAACTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGAAAGAAACCAGTGGATTGGAGAGTTGCAGCCAGCATCAACTTCGGGAATGTCTTTGCGGTGTGCAGCCTTTAAAGAAGATGTTCTTGCAGGGATTGTTGATGGAAGGGACTTAGAAGTTTCATTTGACAACTTTCCATACTATTTGAGTGAGAATACGAAGAATGTGCTTATTGCTGCTTCTTTCATACACTTGAAGCATAAAGAACATTCAAAGTATACCTCAGAATTAAATACGGTGAATCCACGAATTCTACTTTCTGGTCCCGCTGGTTCAGAGATATATCAAGAGATGCTAGCAAAGGCACTTGCCAACTACTATGGTGCTAAGCTACTCATATTTGATAGCCATTCATTTTTGGGCGGTTTATCATCAAAGGAAGCAGAGCTGTTGAAGGATGGAATAAATGCAGCAAAGTCTTGTAGCTGTTCTAAACAGAGTATGGCATCTACTGAGACCACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACTCCAAGCTCTTCAAATGCTACTTTATTCACCCCTGATTCCCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAGATTTATAGGTTCAGCTTCTGGGGGGATATATCCTACAACATCTCCCTCAAGGGGCCCACCCAATGGAACTCGTGGAAAGGTTGTATTAACTTTTGACAACAACTCTTCGTCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTAATGCAACCGATCTTCGTTTGGAGAACTCTGGCGTGGAAGAATTGGATAAGATACTTATTGATATTTTATTTGAGGCGGTATTTAGTGAAAGCCGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCACTTGTCGGAAATTTAGACTCCTATTCTACTTTTAAAATTAGACTGGAAAAGCTTCCTGACAATGTTATAGTAATTGGCTCTCATACTCATACTGACAACCGCAAAGAGAAGTCGCATCCTGGTGGCCTGCTTTTCACGAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGACTACATGACAGAGGAAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTGTTTCCCAATAAAGTTACAATCCATATGCCGCAGGATGAGGGCCTTCTTGTGTCATGGAAACACCAGTTAGAACGAGATGCTGAAACTCTCAAAATGAAGGGAAATCTGAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGGATGGATTGTGAAGGTTTAGAGACATTATGCATCAAGGATCAAACACTTACGAACGAGAGTGCGGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAGTTCTTTTGTCTAGTGAGAGCATTCAATACGGGATAAGCATCTTACAGGCTATCCAGAATGAATCTAAGTGCTTGAAGAAGTCACTTAAGGATGTTGTCACGGAGAATGAATTTGAGAAAAGGCTTTTAGCAGACGTTATCCCACCCAGTGATATAGGAGTCACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGCCATGCAAAGGTATTCTGTTATTTGGCCCACCTGGAACAGGTAAGACGATGCTTGCAAAAGCTGTTGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACGTCAAAGTGGTTCGGTGAGGGTGAGAAGTATGTAAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGTCGAAGAGAAAATCCAGGAGAACATGAGGCCATGCGGAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAGGACACAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGACCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCAAACAGAGCAAAAATACTTAAAGTTATTTTGGCAAAAGAAGATTTGTCTCCAGAATTTGATTTTGATTCGGTTGCTAGTATGACAGATGGATACTCTGGGAGTGACCTTAAGGAGCGAGCTGCAGCTCTTGCAGATGGCAGGCCTGCTCCAGCCCTTAGTGGAAGTGAGGATATTCGGCCTCTAAATATGGATGACTTTAAATATGCTCATGAACGGGTATGTGCGAGTGTTTCGTCGGAGTCTGTAAACATGACAGAGCTGTTACAGTGGAACGAGCTCTACGGTGAAGGGGGTTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATCGTTGCTGCCGGCGGTAAGCCTCCGATCACCCAATTTGGAATTCGCTATTATAATTATCATATGAAAACAACGGATGTTAACTTGTTTAACTTTTTGAATAGAAGGAAATCACATCAGTTCGCAATGGCGGTCTCATTGAGCGATGTTAAGTCGGCAGCCGGTCTAAAAAAGCTCGACGAGTACCTGCTCAGTCGTAGTTACATTTCTGGGTATCAAGCTTCAAAAGATGATATCGCTGTTTACGAAGCTATCTCCAAACCCGTTTCCAGCGAATATGTTAACGTATCTAGGTGGTTCAATCACATCGAAGCACTCATGAGAGCCTCTGCTGGGTTTGGAGAGGGTTCTGGCGTTAAGTTCGATGCAGAAGCAATCGCAACCCCACCAGCTGCCGATGCTAAGGCTAGTGCTGATGACGACGATGATGACGATATGGATCTGTTTGGTGAAGAGACTGAAGAGGAAAAGAAGGCTGCCGAAGAGCGCGCAGCTGCCATCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTTTGATGGATATCAAGCCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCCGTAAGAAGTGTTCAGATGGAAGGATTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTGCAGATAATGCTCACAATTGTTGACGACCTTGTGTCTGTTGACAATCTCATTGAGGAACATTTGACAGTTGAACCAATAAACGAGCATGTCCAGAGTTGTGATATTGTTGCCTTCAACAAAATCTAA | 4416 | 43.46 | MVSTRRSGSLSGSNSKRSSSSEDKPSSPKRQKVENGCGSEKSMPAAENSKELCTAPTVDPGEHGPGGGPIAGVDVGEGVSSLKEDAAPAAVALTTPIAEGTSLVGDKPRSSFSSWSHYAAKQNPNFETTTPWCRLLSQFGQNSNVDIFSSNFTIGSSRGCNFPLKDHTISGTLCKIKHTQRDGSAVAVLESTGGKGSVMVNGLTVKKSTNCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSSKTHQGAELPSKSVVHDAMELEIDALEGNSNPEVRNDKAVDSSTTNRNLHPGSNPDAVIEAGNVKLSGVNDLIGPLFRMLAQSTSCKLKLSKSICKQVMEERNQWIGELQPASTSGMSLRCAAFKEDVLAGIVDGRDLEVSFDNFPYYLSENTKNVLIAASFIHLKHKEHSKYTSELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGINAAKSCSCSKQSMASTETTKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVRFIGSASGGIYPTTSPSRGPPNGTRGKVVLTFDNNSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCNATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNLDSYSTFKIRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNESKCLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKERAAALADGRPAPALSGSEDIRPLNMDDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFIVAAGGKPPITQFGIRYYNYHMKTTDVNLFNFLNRRKSHQFAMAVSLSDVKSAAGLKKLDEYLLSRSYISGYQASKDDIAVYEAISKPVSSEYVNVSRWFNHIEALMRASAGFGEGSGVKFDAEAIATPPAADAKASADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINEHVQSCDIVAFNKI | 1471 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4058352 | 4075815 | - | ClCG03G003700.2 | Cla03g00350 | 268850 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00350 | 1471 | MobiDBLite | consensus disorder prediction | 316 | 346 | - | - | |
Cla03g00350 | 1471 | MobiDBLite | consensus disorder prediction | 282 | 301 | - | - | |
Cla03g00350 | 1471 | SUPERFAMILY | eEF-1beta-like | 1379 | 1471 | IPR036219 | - | |
Cla03g00350 | 1471 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 1460 | 1471 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
Cla03g00350 | 1471 | Pfam | FHA domain | 153 | 222 | IPR000253 | GO:0005515 | |
Cla03g00350 | 1471 | Gene3D | - | 1093 | 1167 | - | - | |
Cla03g00350 | 1471 | SMART | AAA_5 | 957 | 1094 | IPR003593 | - | |
Cla03g00350 | 1471 | MobiDBLite | consensus disorder prediction | 1341 | 1355 | - | - | |
Cla03g00350 | 1471 | Gene3D | - | 1375 | 1471 | IPR014717 | - | |
Cla03g00350 | 1471 | SUPERFAMILY | SMAD/FHA domain | 131 | 229 | IPR008984 | GO:0005515 | |
Cla03g00350 | 1471 | CDD | FHA | 149 | 232 | IPR000253 | GO:0005515 | |
Cla03g00350 | 1471 | MobiDBLite | consensus disorder prediction | 537 | 583 | - | - | |
Cla03g00350 | 1471 | Pfam | EF-1 guanine nucleotide exchange domain | 1384 | 1471 | IPR014038 | GO:0003746|GO:0006414 | |
Cla03g00350 | 1471 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cla03g00350 | 1471 | MobiDBLite | consensus disorder prediction | 326 | 343 | - | - | |
Cla03g00350 | 1471 | CDD | EF1B | 1380 | 1471 | IPR014038 | GO:0003746|GO:0006414 | |
Cla03g00350 | 1471 | Gene3D | - | 131 | 240 | - | - | |
Cla03g00350 | 1471 | PANTHER | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED | 388 | 1205 | - | - | |
Cla03g00350 | 1471 | PANTHER | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED | 77 | 362 | - | - | |
Cla03g00350 | 1471 | SMART | EF1_GNE_2 | 1382 | 1471 | IPR014038 | GO:0003746|GO:0006414 | |
Cla03g00350 | 1471 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Cla03g00350 | 1471 | CDD | AAA | 940 | 1092 | - | - | |
Cla03g00350 | 1471 | Gene3D | - | 938 | 1180 | IPR027417 | - | |
Cla03g00350 | 1471 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 938 | 1180 | IPR027417 | - | |
Cla03g00350 | 1471 | SUPERFAMILY | GST C-terminal domain-like | 1254 | 1311 | IPR036282 | - | |
Cla03g00350 | 1471 | Gene3D | - | 1241 | 1317 | - | - | |
Cla03g00350 | 1471 | ProSitePatterns | AAA-protein family signature. | 1064 | 1083 | IPR003960 | GO:0005524|GO:0016887 | |
Cla03g00350 | 1471 | Coils | Coil | 1354 | 1374 | - | - | |
Cla03g00350 | 1471 | PANTHER | ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 | 388 | 1205 | - | - | |
Cla03g00350 | 1471 | PANTHER | ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 | 77 | 362 | - | - | |
Cla03g00350 | 1471 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 1346 | 1354 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
Cla03g00350 | 1471 | MobiDBLite | consensus disorder prediction | 282 | 299 | - | - | |
Cla03g00350 | 1471 | Pfam | ATPase family associated with various cellular activities (AAA) | 961 | 1090 | IPR003959 | GO:0005524|GO:0016887 | |
Cla03g00350 | 1471 | MobiDBLite | consensus disorder prediction | 22 | 36 | - | - | |
Cla03g00350 | 1471 | MobiDBLite | consensus disorder prediction | 1334 | 1367 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00350 | Cla-Chr3:4058352 | Cla09g00557 | Cla-Chr9:5145467 | 0 | dispersed | |
Cla03g00350 | Cla-Chr3:4058352 | Cla07g00737 | Cla-Chr7:20540932 | 2.17E-24 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00350 | - | - | csv:101214766 | 2214.88 |