Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00352 ATGGCGACGACGACCACCAGTATTGGCGGCGGGGGCGGCGGTGGTGGTGGGGAGGATAGAGTTATGGCTACCGCTCAGCAGATAGTCAATAGCCTTAATACTCCTAAGGAGGTTCGAGACGACATGCTTTTGATCTTCTCTAGTTTTGACAATCGTCTTTCTAATATCACCAGTTTGGTCAACAGTGGGGATTCGAAGAAGGAGGAGGATCGATTTGAAGCTGCTGAGAAGGTGATTCTTCGTTGGGATTCTGGTCATGGAGCTTCTCGGAACTCGATTAATTGGGAGGACTCGCCAGATGAGGCGGCTGAGTACTTAACGGCGGTCGATGATATTATTCAGTGGATCGACGACTTGTCAATTCGTTCGGATTCTGCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCCAGGCTTGAGGATGAGTTTCGTCATTTGTTGATTCGAAGCACCGTCCCTCTCGATGCTGAGCATCTCTACGGTTCAATTCGTAAGGTTTCCCTCTCTTTCGCTTCACACGACAGCGAAAATTCCGATGAATTTGAGTCGTTTGCCGGTGCTGACCGTGGTTCGGGAATCTACCATGAGCGTGGTGTTAGTTTAGGCGATGATTTGCGGGTCGATTTGATTCATCCTGACGCTGTTGTTGATTTGAAAGAGATCGCCGACCGGATGATTCGGTCTGGATACGAGAAAGAGTGTGTTAATGTGTATACTGGTGTCCGACGCGATGCTTTAGATGAGTGCTTGGTGGTTCTTGGACTTGAGAAGCTAAGTATTGAGGATGTTCAGAAAATTGACTGGAAAATCTTGGACGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTCAGTGTTCGAGTACTTTTGACTGGCGAGAAGCGACTGTGTGACTATATCTTTAGTGGTTCTGATGACTCTGAGGAAGTTTGCTTCAATGAGACTGCAAAAGGGTGCATCAGACAATTACTAAATTTTGCAGAAGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATTCTAGATATGTATGAAGCTCTGGAGTACGTTTTCCCTGATTTGCAGGCTATGGTCAGTGATGAATTTGTGATTGAGGAGGCGCAAGGAGTACTTTCTAGGCTGGGAGAGGCCGCCAAAGGTACATTTGCTGAATTTGAGAATGCTGTTCGGAGTGAGACTTCTAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTCACTCGTTATGTCATGAATTACTTAACATTGGTTGTGGTTTATAGTAAGACTCTGGATTCACTTTTAGAAGGCGACGATGAGGATTTGCATCATCTAGGGGGTGATGGTGCTGATAATTTGGAGTTAGAAACTATGTCTCCATTAGCTCGCCGTCTGTTTTCATTGATATCAACACTGGAGACCAATCTAGAGAGAAAATCCAAACTCTATGGTGATGATGCAATACAATATATATTTCTCATGAACAATATACAATATATTGTGCAGAAAGTGAAGGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTTCGTAAACGCCGAGGCCAAGTTCGCATTTATGCAACGAACTATCTTAGGGCATCTTGGGGCAAACTATTGTCTTTCTTGAAGGAAGAAGGTACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTACTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAATCTATAGAGTTCAGACAGGTTGGAAGGTTCCAGATGCTCAACTACGAGAAGAGCTCCGAATTTCAGTGTCCGCAAAAGCGCTACCTGCATATCGTGCCTTCTTGGGAAGACATGGAGTTTTCCCTTGTGTCGTCTTTCGGTTTTCCGATAAGAGTTTTGCTGAAGTAGAGTTGCTGGAATTCTTGTATGATCATCGGTGTTGTGTGGAACAAATCCAAGAAGGAGAAGACCCTAAGCCATGTGATGTAAACCCTAGCGACCAAGGCGATCAATCCCAAGAATGGGAAATCATGGCGCGGGCTTGGCTTTGCTCCTTCCCCGAGGCCAAAGCTGGGTCCATGGAAGAGGTTGAAGCTTGGATTGACTCCAATCATGCCTCTTTACCTGGAAACCTCAAATCAATGCCCCGCTCCGACCTTTGCCAGAGGCTGATTTCTATCCAAAATCTAATGAGACTTTCCACTCAGGGAAAGGAAGAGATTCAGGGTGATCAAGGCGATCAGGGGGATCAGGGAGATCTTCCACACGCTCGATTTCAACGTACCGACCAGTGGATACCAGTTTATTCTTGGTTAGAGTCTCTACATCATGATGAGGTTGTCAAGTCTAAGGAAATATCTGATTGGTTGACTGAAAATCCCACCATCAGAGATCAGCTGTGTTCAAGACATTCTCGTTATCATTTGATGCACTATATCAAAAAGTGCCATTTGAAGATATTGAAAAGAAAGGAAAAGAAAAAGGGTTCGCAGCTGCCCGAAAAGTCTCCTTTAAAAGTTCATAAGGATGGTTTAATGAAACCAGCACTGCCTCCACGTGATTCGTTTAGTGATCTACCAAAAGACAGTGATATATATTTGGCAAAACGAAAGGAAGCCTTTCGAAAATATGAAATTGGAGTTAGAGAAGTTGCTTGCCCCCAACTTTTCCAAGTCTCAAGGAGTCAAATAATTGGAGAAACTTTGGGGACTGCCATCACTCTTGAGTATGGGATATGGGTCCAATTCCAAGTTTGTAGTCATTGCCAGGTTTTTACCTTGTTCATTGCTGAATATTGTGGCCCCATTGCCTCGCTTTCTCACTCTAGAATAGAGTACCAGATCTGA 2832 44.67 MATTTTSIGGGGGGGGGEDRVMATAQQIVNSLNTPKEVRDDMLLIFSSFDNRLSNITSLVNSGDSKKEEDRFEAAEKVILRWDSGHGASRNSINWEDSPDEAAEYLTAVDDIIQWIDDLSIRSDSAEIVDRAENAIQIAMSRLEDEFRHLLIRSTVPLDAEHLYGSIRKVSLSFASHDSENSDEFESFAGADRGSGIYHERGVSLGDDLRVDLIHPDAVVDLKEIADRMIRSGYEKECVNVYTGVRRDALDECLVVLGLEKLSIEDVQKIDWKILDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALEYVFPDLQAMVSDEFVIEEAQGVLSRLGEAAKGTFAEFENAVRSETSKKTMLNAEIHPLTRYVMNYLTLVVVYSKTLDSLLEGDDEDLHHLGGDGADNLELETMSPLARRLFSLISTLETNLERKSKLYGDDAIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEEIYRVQTGWKVPDAQLREELRISVSAKALPAYRAFLGRHGVFPCVVFRFSDKSFAEVELLEFLYDHRCCVEQIQEGEDPKPCDVNPSDQGDQSQEWEIMARAWLCSFPEAKAGSMEEVEAWIDSNHASLPGNLKSMPRSDLCQRLISIQNLMRLSTQGKEEIQGDQGDQGDQGDLPHARFQRTDQWIPVYSWLESLHHDEVVKSKEISDWLTENPTIRDQLCSRHSRYHLMHYIKKCHLKILKRKEKKKGSQLPEKSPLKVHKDGLMKPALPPRDSFSDLPKDSDIYLAKRKEAFRKYEIGVREVACPQLFQVSRSQIIGETLGTAITLEYGIWVQFQVCSHCQVFTLFIAEYCGPIASLSHSRIEYQI 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4086848 4093673 - ClCG03G003730.2 Cla03g00352 268852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00352 943 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 53 617 - -
Cla03g00352 943 SUPERFAMILY Cullin repeat-like 72 614 IPR016159 -
Cla03g00352 943 Gene3D Exocyst complex component Exo70 87 624 - -
Cla03g00352 943 MobiDBLite consensus disorder prediction 1 20 - -
Cla03g00352 943 PANTHER EXOCYST COMPLEX PROTEIN EXO70 53 617 IPR004140 GO:0000145|GO:0006887
Cla03g00352 943 Pfam Exo70 exocyst complex subunit 280 614 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00352 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101212753 1120.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00352 Cla-Chr3:4086848 Cla03g01298 Cla-Chr3:27749758 0 dispersed
Cla07g01455 Cla-Chr7:31816529 Cla03g00352 Cla-Chr3:4086848 2.73E-92 dispersed
Cla03g00352 Cla-Chr3:4086848 Cla07g01376 Cla-Chr7:30912560 2.19E-136 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02225 . 12 670 EXO70 exocyst subunit family AT5G03540 74.5 2.4e-283 971.5
Cla01g01477 . 1 624 EXO70 exocyst subunit family AT5G03540 68.8 1.3e-244 842.8
Cla01g01477 . 1 624 EXO70 exocyst subunit family AT5G52340 76.9 1.3e-273 939.1
Cla05g02225 . 14 670 EXO70 exocyst subunit family AT5G52340 72.8 1.1e-269 926.0
Cla05g02225 . 166 670 EXO70 exocyst subunit family AT5G52350 59.5 8.1e-166 580.9
Cla01g01477 . 169 624 EXO70 exocyst subunit family AT5G52350 63.0 8.7e-160 560.8
Cla03g00043 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.8e-246 847.8
Cla03g00043 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.1e-173 607.1
Cla07g01455 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.8e-175 611.7
Cla01g00853 . 113 724 EXO70 exocyst subunit family AT5G13990 54.5 6.2e-189 657.9
Cla07g01376 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.9e-217 751.1
Cla07g01376 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.4e-208 723.0
Cla07g01376 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.8e-219 756.9
Cla03g01298 . 27 664 EXO70 exocyst subunit family AT5G50380 61.4 1.2e-224 776.5
Cla03g00352 . 18 613 EXO70 exocyst subunit family AT5G50380 61.3 3.8e-207 718.4
Cla08g01259 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.4e-294 1008.8
Cla10g01975 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.0e-178 622.9
Cla10g01978 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.0e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00352 Cla_Chr03 FPKM 22.796972 22.603437 50.973976 50.130432 21.710909 19.805777 21.601114 45.925442 51.457542 44.141109