Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00352 ATGGCGACGACGACCACCAGTATTGGCGGCGGGGGCGGCGGTGGTGGTGGGGAGGATAGAGTTATGGCTACCGCTCAGCAGATAGTCAATAGCCTTAATACTCCTAAGGAGGTTCGAGACGACATGCTTTTGATCTTCTCTAGTTTTGACAATCGTCTTTCTAATATCACCAGTTTGGTCAACAGTGGGGATTCGAAGAAGGAGGAGGATCGATTTGAAGCTGCTGAGAAGGTGATTCTTCGTTGGGATTCTGGTCATGGAGCTTCTCGGAACTCGATTAATTGGGAGGACTCGCCAGATGAGGCGGCTGAGTACTTAACGGCGGTCGATGATATTATTCAGTGGATCGACGACTTGTCAATTCGTTCGGATTCTGCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCCAGGCTTGAGGATGAGTTTCGTCATTTGTTGATTCGAAGCACCGTCCCTCTCGATGCTGAGCATCTCTACGGTTCAATTCGTAAGGTTTCCCTCTCTTTCGCTTCACACGACAGCGAAAATTCCGATGAATTTGAGTCGTTTGCCGGTGCTGACCGTGGTTCGGGAATCTACCATGAGCGTGGTGTTAGTTTAGGCGATGATTTGCGGGTCGATTTGATTCATCCTGACGCTGTTGTTGATTTGAAAGAGATCGCCGACCGGATGATTCGGTCTGGATACGAGAAAGAGTGTGTTAATGTGTATACTGGTGTCCGACGCGATGCTTTAGATGAGTGCTTGGTGGTTCTTGGACTTGAGAAGCTAAGTATTGAGGATGTTCAGAAAATTGACTGGAAAATCTTGGACGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTCAGTGTTCGAGTACTTTTGACTGGCGAGAAGCGACTGTGTGACTATATCTTTAGTGGTTCTGATGACTCTGAGGAAGTTTGCTTCAATGAGACTGCAAAAGGGTGCATCAGACAATTACTAAATTTTGCAGAAGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATTCTAGATATGTATGAAGCTCTGGAGTACGTTTTCCCTGATTTGCAGGCTATGGTCAGTGATGAATTTGTGATTGAGGAGGCGCAAGGAGTACTTTCTAGGCTGGGAGAGGCCGCCAAAGGTACATTTGCTGAATTTGAGAATGCTGTTCGGAGTGAGACTTCTAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTCACTCGTTATGTCATGAATTACTTAACATTGGTTGTGGTTTATAGTAAGACTCTGGATTCACTTTTAGAAGGCGACGATGAGGATTTGCATCATCTAGGGGGTGATGGTGCTGATAATTTGGAGTTAGAAACTATGTCTCCATTAGCTCGCCGTCTGTTTTCATTGATATCAACACTGGAGACCAATCTAGAGAGAAAATCCAAACTCTATGGTGATGATGCAATACAATATATATTTCTCATGAACAATATACAATATATTGTGCAGAAAGTGAAGGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTTCGTAAACGCCGAGGCCAAGTTCGCATTTATGCAACGAACTATCTTAGGGCATCTTGGGGCAAACTATTGTCTTTCTTGAAGGAAGAAGGTACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTACTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAATCTATAGAGTTCAGACAGGTTGGAAGGTTCCAGATGCTCAACTACGAGAAGAGCTCCGAATTTCAGTGTCCGCAAAAGCGCTACCTGCATATCGTGCCTTCTTGGGAAGACATGGAGTTTTCCCTTGTGTCGTCTTTCGGTTTTCCGATAAGAGTTTTGCTGAAGTAGAGTTGCTGGAATTCTTGTATGATCATCGGTGTTGTGTGGAACAAATCCAAGAAGGAGAAGACCCTAAGCCATGTGATGTAAACCCTAGCGACCAAGGCGATCAATCCCAAGAATGGGAAATCATGGCGCGGGCTTGGCTTTGCTCCTTCCCCGAGGCCAAAGCTGGGTCCATGGAAGAGGTTGAAGCTTGGATTGACTCCAATCATGCCTCTTTACCTGGAAACCTCAAATCAATGCCCCGCTCCGACCTTTGCCAGAGGCTGATTTCTATCCAAAATCTAATGAGACTTTCCACTCAGGGAAAGGAAGAGATTCAGGGTGATCAAGGCGATCAGGGGGATCAGGGAGATCTTCCACACGCTCGATTTCAACGTACCGACCAGTGGATACCAGTTTATTCTTGGTTAGAGTCTCTACATCATGATGAGGTTGTCAAGTCTAAGGAAATATCTGATTGGTTGACTGAAAATCCCACCATCAGAGATCAGCTGTGTTCAAGACATTCTCGTTATCATTTGATGCACTATATCAAAAAGTGCCATTTGAAGATATTGAAAAGAAAGGAAAAGAAAAAGGGTTCGCAGCTGCCCGAAAAGTCTCCTTTAAAAGTTCATAAGGATGGTTTAATGAAACCAGCACTGCCTCCACGTGATTCGTTTAGTGATCTACCAAAAGACAGTGATATATATTTGGCAAAACGAAAGGAAGCCTTTCGAAAATATGAAATTGGAGTTAGAGAAGTTGCTTGCCCCCAACTTTTCCAAGTCTCAAGGAGTCAAATAATTGGAGAAACTTTGGGGACTGCCATCACTCTTGAGTATGGGATATGGGTCCAATTCCAAGTTTGTAGTCATTGCCAGGTTTTTACCTTGTTCATTGCTGAATATTGTGGCCCCATTGCCTCGCTTTCTCACTCTAGAATAGAGTACCAGATCTGA 2832 44.67 MATTTTSIGGGGGGGGGEDRVMATAQQIVNSLNTPKEVRDDMLLIFSSFDNRLSNITSLVNSGDSKKEEDRFEAAEKVILRWDSGHGASRNSINWEDSPDEAAEYLTAVDDIIQWIDDLSIRSDSAEIVDRAENAIQIAMSRLEDEFRHLLIRSTVPLDAEHLYGSIRKVSLSFASHDSENSDEFESFAGADRGSGIYHERGVSLGDDLRVDLIHPDAVVDLKEIADRMIRSGYEKECVNVYTGVRRDALDECLVVLGLEKLSIEDVQKIDWKILDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALEYVFPDLQAMVSDEFVIEEAQGVLSRLGEAAKGTFAEFENAVRSETSKKTMLNAEIHPLTRYVMNYLTLVVVYSKTLDSLLEGDDEDLHHLGGDGADNLELETMSPLARRLFSLISTLETNLERKSKLYGDDAIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEEIYRVQTGWKVPDAQLREELRISVSAKALPAYRAFLGRHGVFPCVVFRFSDKSFAEVELLEFLYDHRCCVEQIQEGEDPKPCDVNPSDQGDQSQEWEIMARAWLCSFPEAKAGSMEEVEAWIDSNHASLPGNLKSMPRSDLCQRLISIQNLMRLSTQGKEEIQGDQGDQGDQGDLPHARFQRTDQWIPVYSWLESLHHDEVVKSKEISDWLTENPTIRDQLCSRHSRYHLMHYIKKCHLKILKRKEKKKGSQLPEKSPLKVHKDGLMKPALPPRDSFSDLPKDSDIYLAKRKEAFRKYEIGVREVACPQLFQVSRSQIIGETLGTAITLEYGIWVQFQVCSHCQVFTLFIAEYCGPIASLSHSRIEYQI 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4086848 4093673 - ClCG03G003730.2 Cla03g00352 268852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00352 943 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 53 617 - -
Cla03g00352 943 SUPERFAMILY Cullin repeat-like 72 614 IPR016159 -
Cla03g00352 943 Gene3D Exocyst complex component Exo70 87 624 - -
Cla03g00352 943 MobiDBLite consensus disorder prediction 1 20 - -
Cla03g00352 943 PANTHER EXOCYST COMPLEX PROTEIN EXO70 53 617 IPR004140 GO:0000145|GO:0006887
Cla03g00352 943 Pfam Exo70 exocyst complex subunit 280 614 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00352 Cla-Chr3:4086848 Cla03g01298 Cla-Chr3:27749758 0 dispersed
Cla07g01455 Cla-Chr7:31816529 Cla03g00352 Cla-Chr3:4086848 2.73E-92 dispersed
Cla03g00352 Cla-Chr3:4086848 Cla07g01376 Cla-Chr7:30912560 2.19E-136 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00352 K07195 - csv:101212753 1120.15