Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00356 ATGAAGAAAAAGAAGGAGAAGAAGAGCGCATACGAATACTGCCTCGTCTGCAAGCTAAACCACGATCAAGGGCAGCGTCACAAGTATTTTCCCAACCACAAAAAATCTCTTTCTGCTTTTCTATCTCGGTTCGAGATCAAGCTGTCTGACGTTCGCTTTTTTCTCAACACCCCCTTTCGCCTCTCGCCCGAGTATGCTTCTCAAAATCGGTTCTGGTGCATCTTTTGCGATGTTCAAGTCGATGAGAATGATAGTTCCTTCGCATGTAGCAATGCAATTAAACACCTGGCCAGCGCGGATCATCTGAAGAATTTGAAGCATTTCTTCTGGAAGTATGGTGGTGATGTGGAACGTCTGGATGATTATAGAATTTTGGAAGCTGATGTAGCTAAGTGGGAGAAGAAGTGCAAAGTACAAAGCATAGCTGCTTCTTCCGGTCTTGGACCTACAAATGATATCCAAAATCAAGTCCAATATGGAAATTTTGATAATTTTGGGAATAATAATATCCACTCTGTTGAATCTAGTTCGTCAATTAGTGTTTTGCCTTTACACAGTTATACAAATGAGTATCAGGTATCCAATTCATCCTATTCAGGATCCTCTGATGTTTCAAATTTGGTCTCGTTTCCACTTGATACCACTGTTTCTTTGCATGCTGGGTCATGTTCTGGTGCACATGTATGGAGCGCAAAGGATTTATCACTTAGTGAGGACAACAAGCATTACCAACTGGATAGTGGTAGAACATGCACTGCCAATGGTCATTCCGGTGGTCAGGGGATGTACGTGATGCATCAGAATGAAAGAACTGGGAACGAAGAAAGCTATCCTGAAGGTTTTCATACCCTCGCTCGGATTTCTAATATTGTTTCTGGAGATTCTGGCGGAAATGTTCATTCAGGGATGCTGCCTCCTTGGCTTGAAAACCCGGAAGATTGTGGGTTTAAGGTTCAAATAAGAGCAGAGGTTGGGGGTGGTGTTTCTTCTGTGAATGAATCTGCAAAGTCAAAGAAACTGAACCCAAAACGAGTAGGAGCTGCGTGGGCAGAAAAAAGGAAGCTGGAGATGGAAATGGAGAAGAGAGGAGAAATTGTCCAAAGCTATGGTGACAAGAATTGGCTTCCTAATTTTGGTAGGGTATGGCAATCTGGTAGCCGTAAAGAATCTCGAAAAGAATTTGAGAAGGAGAAATCAAAATTCCTGATGGTTGAAAATTCACCTGAAACAAATGTCGATATTCAGCCATACATTAGCAAACGGATGCGAAGAGATCGGGAGATCAAGGATGATACTGCCAATCACACGAGTTTGTTGGGATTTGATTCTTCAAAATATCCGTGTTCTCCTTTTGCAGTGGCCAAGCAGCTGTTCCATATCTCGTGCCTCCATCTTTTTCCAGTTGCTGCCAAGAAAGGTGCCCGGGGACTGATTGTATACGTATTTCTCTGTACCTTCATCCCAGAAGAAAAATGA 1476 42.68 MKKKKEKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSAFLSRFEIKLSDVRFFLNTPFRLSPEYASQNRFWCIFCDVQVDENDSSFACSNAIKHLASADHLKNLKHFFWKYGGDVERLDDYRILEADVAKWEKKCKVQSIAASSGLGPTNDIQNQVQYGNFDNFGNNNIHSVESSSSISVLPLHSYTNEYQVSNSSYSGSSDVSNLVSFPLDTTVSLHAGSCSGAHVWSAKDLSLSEDNKHYQLDSGRTCTANGHSGGQGMYVMHQNERTGNEESYPEGFHTLARISNIVSGDSGGNVHSGMLPPWLENPEDCGFKVQIRAEVGGGVSSVNESAKSKKLNPKRVGAAWAEKRKLEMEMEKRGEIVQSYGDKNWLPNFGRVWQSGSRKESRKEFEKEKSKFLMVENSPETNVDIQPYISKRMRRDREIKDDTANHTSLLGFDSSKYPCSPFAVAKQLFHISCLHLFPVAAKKGARGLIVYVFLCTFIPEEK 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4138441 4143167 + ClCG03G003790.2 Cla03g00356 268856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00356 491 Pfam Coiled coil protein 84 13 400 IPR028015 -
Cla03g00356 491 PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 84 1 425 IPR028015 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00356 - - - csv:101221031 744.962
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g105 . . . . . . . . Cmo13g00838 . . . . . . Cpe20g00304 . . . . . . . . . . . . . . . Cone2ag0978 . . . Lsi02g00506 Csa01g00967 Chy12g01166 Cme12g01587 . . . Bda14g01360 . Bpe15g00221 Bma03g01252 . Sed08g2433 . . Cma13g00806 . Car13g00654 . . . Bhi08g01491 Tan05g2967 Cmetu12g0011 Lac10g0586 Hepe07g2112 . . Cla03g00356 Cam03g0375 Cec03g0362 Cco03g0378 Clacu03g0374 Cmu03g0980 Cre03g0672 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004578 1 9 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00356 Cla_Chr03 FPKM 10.510437 11.085685 8.956907 9.759816 14.798948 14.492736 15.74413 7.811591 6.935112 7.049807