Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00359 ATGCCCTCAAGCAAGCACACCGTAAGCGATGAGAGAGGGTGCATCAATTTTGACCCAATCATCCCTAGTCTCCCAGCGTTCAAAGTATTTCTTCCTCCCTTTAAAAACCGCACACGGCCACAACTCGTTCGAACTGGAAACCAAATTTCGCGAAAAACATTTATTTTCTCGACGTTTACTTCGCATTTCGGAGCCATGGATGCCGTAGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCCAAGGACAGCGTTCGTCTCGTTAAGAGATGTCATAAACCCGATCGCAAGGAATTCACCAAGGTTGCCGTCCGTACCGCTATCGGATTCGTTGTGATGGGATTTGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTCGGATCTGATATGAGAGGAGGGCAGAGCCCAGAAAGAACGAGGGCAAATGTCCTCTCTTATTTTGTAAACTCAGAAGGCATCTATCAAGTCATGATGAAGTACGTAGGTGATGGCGGCTGGCGTTTACGTTTAGTGCAACCTGTGTTCATGGAGGAATACTTAGCATACTTAGCTCTCCTTTAG 576 46.35 MPSSKHTVSDERGCINFDPIIPSLPAFKVFLPPFKNRTRPQLVRTGNQISRKTFIFSTFTSHFGAMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSDMRGGQSPERTRANVLSYFVNSEGIYQVMMKYVGDGGWRLRLVQPVFMEEYLAYLALL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4150464 4153977 - ClCG03G003820.2 Cla03g00359 268859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00359 191 PANTHER SEC61 GAMMA SUBUNIT 42 133 - -
Cla03g00359 191 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 73 131 IPR008158 GO:0008320|GO:0015031|GO:0016020
Cla03g00359 191 Gene3D Preprotein translocase SecE subunit 72 133 IPR023391 -
Cla03g00359 191 Hamap Protein translocase subunit SecE [secE]. 74 129 IPR001901 GO:0006605|GO:0006886|GO:0016020
Cla03g00359 191 Pfam SecE/Sec61-gamma subunits of protein translocation complex 78 130 IPR001901 GO:0006605|GO:0006886|GO:0016020
Cla03g00359 191 ProSitePatterns Protein secE/sec61-gamma signature. 79 107 IPR001901 GO:0006605|GO:0006886|GO:0016020
Cla03g00359 191 PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3 42 133 - -
Cla03g00359 191 SUPERFAMILY Preprotein translocase SecE subunit 70 130 IPR023391 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00359 K07342 SEC61G, SSS1, secE; protein transport protein SEC61 subunit gamma and related proteins - mcha:111008832 159.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00359 Cla-Chr3:4150464 Cla06g01744 Cla-Chr6:31005469 1.86E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g101 . Blo16g00272 Bda06g00725 . Bpe12g00479 Bpe13g00200 Bma06g00261 Bma12g01083 Cmo13g00841 Cmo18g00222 . . . . . Cpe20g00303 . Bhi02g00520 . . . . . . . . . . . . . Cone2ag0981 Cone16ag0015 Cone13ag0226 Cone19ag0211 Lsi02g00510 Csa01g00972 Chy12g01161 Cme12g01585 . Blo15g00206 Bda11g01596 Bda14g01358 Bpe07g00892 Bpe15g00222 Bma03g01251 . Sed08g2430 . . Cma13g00811 Cma18g00314 Car13g00657 Car18g00233 Cpe09g00957 . Bhi08g01503 Tan05g2975 Cmetu12g2007 Lac10g0589 Hepe07g2115 . . Cla03g00359 Cam03g0379 Cec03g0365 . Clacu03g0378 Cmu03g0983 Cre03g0675 Lsi06g01644 Csa01g00053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001129 5 5 4 4 2 2 3 1 3 2 2 2 3 2 2 3 1 4 3 1 3 2 2 1 2 2 3 2 2 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00359 Cla_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.213068 4.773175 4.747122