Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00370 ATGGAGTTGATTCAGAGCTTCATGAATTTAGTAGCTCCACCCATCACTTTCATCTCTCTCGGATTTTTCTTGCCGCCGTACGTTGTTTTCAAGTATTTCATTTCTTTGGTTAGAGCCGTTTTTAGCGAAGACGTCACCGGAAAAGTCGTTCTAATCACCGGAGCTTCCTCCGGCATCGGAGAGCATTTGGCGTACGAGTATGCAAACAGAGGAGCTCAATTAGCTCTTGTAGATAGAAGAGAGACTCCACTTGAAGAAGTTGCCGATACAGCTCGCTTCTATGGCTCCCCTGATGTTATCACCATCCCAGCCGACGTTTCCAACCTCCAAGATTGTCGACGAATCATTGACAACACGATGAATCACTTTGGCCGATTGGATCATTTAGTGAACAATGCAGGCATCGCCAACATGACCCTATTTGAAGAAATCACAGACATCACTTCTTTCAATCAAATAATGGATACAAATTACTGGGGATCGGTTTATATGACCCAATTCGCAATTCCATATCTGAGGAACAGCAGAGGGAGGATCATTGCAACCAAGGCGGCGCTTAGGAGCATGTTTGAGACATTGAGAGTGGAATTAGCTCCTGAAATTGGGATCACAATTGTAACGCCTGGTTTTGTGGAGTCAGAGTTAACTAAAGGCAAGGCCTTGTATTCTCAAGGTGCAATGGAAGTTCATCAGGATGTTAGAGATGCTCTGATCGGTGTGATACCGGTAGAGACGGTGGACGCATGTGCAAGGGCCATTGTGAGGAGCGCGTGCCGTGGGGACCGGTACTTGACAGAACCGTCTTGGTACAATGGCTTGTATTACTTGAAAGCGTTTTGCCCAGAGGTGTTGGAGTGGTGTTACAGAATATTTGTGTATACTCGGCCGGGATCCTCGGCCGCAGAGGCGCCGAGCAAGAAGATGCTGGATGTCACGGGAGCCAAGAATACAGCCATGAATCTCATTCACAGCTTTCTGAATTTAGTCTCTCCACCCTTCACTTTTATCTCCCTCTTCCTTTTACTACCGCCTTATCAAGCTTTTAAATCATTCCTCTCTTTAGTTGGTGCTCTCTTCACTGAAAATGTCAATGGAAAGGTCGTTCTCATCACCGGTGCTTCCTCCGGTATTGGCGAGCATTTGGCGTACGAGTATGCGAAGAGAGGAGCTTGCTTAGTGCTTGTAGCAAGACGACAGAATCTACTTGAAGAAGTTGCAGACATAGCTCGTTATTATGGATCACCAAGTGTAATCACCATTAAAGCGGATGTTTCCAAGTTTGAAGATTGCCGGCGAGTCATCAACGAGACAATGAATCAATTTGGGAGATTGGATCATTTGGTGAACAATGCGGCGATAACTCATTTGGTGCTGTTTGAAGACATAGCTGATATTGCTGCGTTCAGACAAGTAATGGATATAAACTACTGGGGAGCAGTGTACATAACTCATCTGGCAATTCCTTATTTGAGATACAGCCGAGGGAAGATCGTGGCTTTGTCGGCTCCGCCGGCGTGGCTACCGGCGCCGAGAATGAGTATTTACAATTCGAGCAAGGCGGCGATTAAGAGTATGTTTGAGACATTGAGAGTGGAGCTGGCGCCGGAGATTGGTGTGACGATTGTTACTCCTGGCTTCGTTGAATCTGAATTGACTCAAGGAAAAGCATTGAACGCTGTAGGCAAAACTGAACTTCGTCAGGATATGAGGGATGCATTGATAGGGATTGTACCGGTGGAGACGGCGGAGGAATGCGCGAAGGCGGTGGTGAGAGGAGTATGCAGGGGACACAGGTACGTGACGGAGCCGTCGTGGTATAATGTGCTTTATTACTGGAAGGCGTTTTGTCCGGAGGTGGTTGAGTGGTGCTACCGGATAATGGCTATGCCGGCGCCTGGAGCTTCTGAATCCGACGCCCTCAGCAAGTACGCCCTGGACTTTACCGGTGGCAAGTCCACTTTTGCCGAAGATGTCGCCGGAAAAGTGGTTCTAATCACCGGAGCATCCTCAGGCATCGGCGAGCATCTGGCGTACGAGTACGCTAAAAGGGGAGCTTATTTGGCGTTGGTTGCAAGAAGGGAAAACCGTCTCCGGGAAGTTGCTGACGTGGCGGAGATTTTAGGCTCACCTTATGCTCTCGTCATCCATGCTGACGTGTCCAACGTTGATGATTGCAAACGATGTGTCCATACAACTGTGGCTCACTTCGGACTGGATCAATTGGTTAACAACGCCGGAATTACCAGCATCAACTTGTTCGAAGAATACAACGACCCAAGAAACATTGCATCAGTAATGGACACCGACTTCTGGGGAACGGTTTACTGCACTTATTACGCCATTCCATACCTCAAACAAAGCAGAGGCAAAATCATTGGAATTGCTTCCTCCGCCGCATGGCTACCCACCCCACGCCTGAGCTTCTACACTGCAAGCAAAGCAGCAGTGATAAGTTTCTACGAGACATTGAGAGTTGAAATTGGGAGAGATATCCGAATTACAATTGTGACTCCGGGGCTGACGGAGTCGGAGATGACAAAGGGGAAATTCATGTTCGAAGATGGGAAGATGTACTTGGATCAAGAATTGAGAGACGCGGTGATGAGCGTGATGCCGATCGAGCCGGTGGGTGGCGCGGCGGAAGCAATAGTGAGGGGGGGCTGCAGGGGAGATGAGTACGTGACGGAACCGCCATGGATGAGGATGACGTTTTACTGGCGAATGTTGTTGCCGGAGGTGGTGGAGTGGTTGAATTACTTGTTTATAATGACGGGAAGTTCACCGACGGACAGTTTTGGGAAAAGGCTGCTTGAGTTTAGTGGATTGAAGCCCTTTATTTATCCAGCTTCGTTGAAGCTGTGTGTTGTGTGTAATGGTAATGATCTAATCCAAATGGATTTCCTCAACAGTTTCTTAAACCTTATACTTCCACCAATATCTCTAACAGCCTTCTTCTTCTTTCTCCCAATTTACTTGTTTTTCAAGTCCCTCTCATTCATAACAAGCTCCATCTTCAGCGAAGATGTCGCCGGAAAAGTTGTTCTCATCACCGGAGCATCCTCAGGCATCGGCGAGCATCTGGCATACGAATACGCTAAAAGAGGAGCTTATTTGGCGTTGGTTGCCAGAAGAGAAAACCGGCTCCAGGAAGTGGCCGCCGTGGCAGAGTCTATAGGCTCACCCTACGCCCTCGTAATTCCGGCGGATATTTCCAAGGTTGAAGATTGTAAACGATGTATCCAAACCACCGTCACCCACTTCCGACGACTGGATCATTTGGTAAACAATGCGGGGGTATCCAGCATCAACCTGTTTGAAGAATACGACAACCTCCAAAATGCTGTCCCAGTAATGGACGTAAACTTCTGGGGAATGGTATATTGTAGTTACTATGGGATTCCACACTTAAAGCAAAGCAGAGGGAAGATCATCGGAATTGCTTCCGCCGCTGCATGGCTACCTGCCCCCAGGCTCAGCTTCTACACCTCCAGCAAAGCAGCAGTGATAAGCTTCTACGAGACACTGAGAGTGGAAGTTGGAAGAGAGATCGGAATTACGATCGTGACCCCAGGGCTGGTTGAATCAGAGATGACACAAGGCAAATTCATGTCCAAAGATGGCCGTTTATACCTTGACAAACAACTTAGAGACGCTACGGTGAGCATAATGCCGATTATGCCAATCAACGACGCGGTGAAGGGGATCTTAAGGAGCGTGTGCAGGGGAGACCGGTACGCGACGGAGCCGCGGTGGATGAGGATGGCGTTTTACTATAAGACGGTGTGGCCTGAGTTAGTAGAGTGGTTTAATTACTTGGTTACTATGTCAGGATCATCTAATTCTCCCACAAACACTTTTGGGAAAAGGCTGCTTCAGCTTAGTGGATTGAAGAAATGGTTTTATCCGGAGTCTGTTCGATCCCAGCAATTGGACCTCAAATCCAAC 3945 48.04 MELIQSFMNLVAPPITFISLGFFLPPYVVFKYFISLVRAVFSEDVTGKVVLITGASSGIGEHLAYEYANRGAQLALVDRRETPLEEVADTARFYGSPDVITIPADVSNLQDCRRIIDNTMNHFGRLDHLVNNAGIANMTLFEEITDITSFNQIMDTNYWGSVYMTQFAIPYLRNSRGRIIATKAALRSMFETLRVELAPEIGITIVTPGFVESELTKGKALYSQGAMEVHQDVRDALIGVIPVETVDACARAIVRSACRGDRYLTEPSWYNGLYYLKAFCPEVLEWCYRIFVYTRPGSSAAEAPSKKMLDVTGAKNTAMNLIHSFLNLVSPPFTFISLFLLLPPYQAFKSFLSLVGALFTENVNGKVVLITGASSGIGEHLAYEYAKRGACLVLVARRQNLLEEVADIARYYGSPSVITIKADVSKFEDCRRVINETMNQFGRLDHLVNNAAITHLVLFEDIADIAAFRQVMDINYWGAVYITHLAIPYLRYSRGKIVALSAPPAWLPAPRMSIYNSSKAAIKSMFETLRVELAPEIGVTIVTPGFVESELTQGKALNAVGKTELRQDMRDALIGIVPVETAEECAKAVVRGVCRGHRYVTEPSWYNVLYYWKAFCPEVVEWCYRIMAMPAPGASESDALSKYALDFTGGKSTFAEDVAGKVVLITGASSGIGEHLAYEYAKRGAYLALVARRENRLREVADVAEILGSPYALVIHADVSNVDDCKRCVHTTVAHFGLDQLVNNAGITSINLFEEYNDPRNIASVMDTDFWGTVYCTYYAIPYLKQSRGKIIGIASSAAWLPTPRLSFYTASKAAVISFYETLRVEIGRDIRITIVTPGLTESEMTKGKFMFEDGKMYLDQELRDAVMSVMPIEPVGGAAEAIVRGGCRGDEYVTEPPWMRMTFYWRMLLPEVVEWLNYLFIMTGSSPTDSFGKRLLEFSGLKPFIYPASLKLCVVCNGNDLIQMDFLNSFLNLILPPISLTAFFFFLPIYLFFKSLSFITSSIFSEDVAGKVVLITGASSGIGEHLAYEYAKRGAYLALVARRENRLQEVAAVAESIGSPYALVIPADISKVEDCKRCIQTTVTHFRRLDHLVNNAGVSSINLFEEYDNLQNAVPVMDVNFWGMVYCSYYGIPHLKQSRGKIIGIASAAAWLPAPRLSFYTSSKAAVISFYETLRVEVGREIGITIVTPGLVESEMTQGKFMSKDGRLYLDKQLRDATVSIMPIMPINDAVKGILRSVCRGDRYATEPRWMRMAFYYKTVWPELVEWFNYLVTMSGSSNSPTNTFGKRLLQLSGLKKWFYPESVRSQQLDLKSN 1315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4246531 4265265 + ClCG03G003930.1 Cla03g00370 268870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00370 1315 PRINTS Glucose/ribitol dehydrogenase family signature 736 747 IPR002347 -
Cla03g00370 1315 PRINTS Glucose/ribitol dehydrogenase family signature 783 799 IPR002347 -
Cla03g00370 1315 PRINTS Glucose/ribitol dehydrogenase family signature 809 828 IPR002347 -
Cla03g00370 1315 PRINTS Glucose/ribitol dehydrogenase family signature 662 679 IPR002347 -
Cla03g00370 1315 PRINTS Glucose/ribitol dehydrogenase family signature 829 846 IPR002347 -
Cla03g00370 1315 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 796 824 IPR020904 GO:0016491
Cla03g00370 1315 PANTHER RETINOL DEHYDROGENASE-RELATED 1 316 - -
Cla03g00370 1315 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 316 - -
Cla03g00370 1315 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 319 652 - -
Cla03g00370 1315 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 651 951 - -
Cla03g00370 1315 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 965 1305 - -
Cla03g00370 1315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 361 627 IPR036291 -
Cla03g00370 1315 Gene3D - 356 629 - -
Cla03g00370 1315 Gene3D - 996 1277 - -
Cla03g00370 1315 Gene3D - 647 924 - -
Cla03g00370 1315 Gene3D - 35 294 - -
Cla03g00370 1315 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 1148 1176 IPR020904 GO:0016491
Cla03g00370 1315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 1161 1180 IPR002347 -
Cla03g00370 1315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 1088 1099 IPR002347 -
Cla03g00370 1315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 1141 1149 IPR002347 -
Cla03g00370 1315 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 502 530 IPR020904 GO:0016491
Cla03g00370 1315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1007 1272 IPR036291 -
Cla03g00370 1315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 657 922 IPR036291 -
Cla03g00370 1315 Pfam short chain dehydrogenase 48 181 IPR002347 -
Cla03g00370 1315 Pfam short chain dehydrogenase 1012 1201 IPR002347 -
Cla03g00370 1315 Pfam short chain dehydrogenase 661 849 IPR002347 -
Cla03g00370 1315 Pfam short chain dehydrogenase 366 554 IPR002347 -
Cla03g00370 1315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 293 IPR036291 -
Cla03g00370 1315 PANTHER RETINOL DEHYDROGENASE-RELATED 319 652 - -
Cla03g00370 1315 PANTHER RETINOL DEHYDROGENASE-RELATED 651 951 - -
Cla03g00370 1315 PANTHER RETINOL DEHYDROGENASE-RELATED 965 1305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00370 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - csv:101220450 626.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00370 Cla-Chr3:4246531 Cla08g00072 Cla-Chr8:1540724 2.18E-70 dispersed
Cla05g01192 Cla-Chr5:13088808 Cla03g00370 Cla-Chr3:4246531 1.70E-07 dispersed
Cla03g00370 Cla-Chr3:4246531 Cla01g01158 Cla-Chr1:19694839 2.89E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g77 . . . . . . . . Cmo13g00852 Cmo18g00231 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0003 . . Lsi02g00519 Csa01g00981 Chy12g01151 Cme12g01572 . . . Bda14g01347 . Bpe15g00229 . . . . . Cma13g00821 Cma18g00304 . . Cpe09g00950 . Bhi08g01521 Tan05g2995 Cmetu12g0843 Lac10g0601 . . . Cla03g00370 Cam03g0390 Cec03g0376 Cco03g0391 Clacu03g0389 Cmu03g0994 Cre03g0686 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00370 Cla_Chr03 FPKM 2.583933 3.314901 19.557842 22.075026 27.609615 22.623314 26.366217 13.998422 17.055317 18.355743