Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00375 ATGGGTTGCGTTCTTGGCAGACAAACCGCCGACGCTCGCCTGGGCACATCCGGACCTCCCCGTCGCCGCCGGACCACGGATCACCTCTCTCATATCGACGGAGTTAATGGCGACAGAGTTAAGAAACAGACGACTACGTTGGAAAACCAGGGAGTTCGGCAGGACCTGGATTCCTTCTCCGTAGAGCGCCGGAGGCCTTCGCCGAGCCTTTTCCAGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCGGTCGCTGGCGAGGTGATCCAAGGATGGACGCCTCGTCGAGCCAATACGTTCGAGAAACTTGCTAAGATTGGGCAAGGGACGTATAGTAATGTGTACAAGGCGAGGGATCTTATTACTGGCAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGGTTTATGGCTAGAGAGATTTTGGTCCTGAAACGTCTCGATCATCCCAATGTGCTTAAGCTCGAAGGCTTAGTTACCTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAATCAAGTTCACGGAGCCTCAGATATTTCTTCCGGAATTGCAAGTTCTGTCGTCTTTTGAAAAGAAAATGACGAACAAGATTGCTTGTGTCCCATTAGTTTCTGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAACCGAGGTGTATTGCATCGTGATATTAAAGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGTTTAGCTACTTTCTTTGATCCTGAACAGAACCAGCATATGACCAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCTGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTTCACAAGATATTTAAATTATGTGGTTCTCCATCTGAAGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATTGCTGAAACATTCAAAGATTTTCCTTCTTCTTCTCTACCTCTTATCGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTTTGAATAGCGAGTTCTTTACTACGGAGCCTCTTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGTTTTTTTGCCCCTTCCCCTTGCTCTTGTTTAAATCATCTAGGAGAGTAAGAATACGGGATCGGGTTGGTCGGGCTGTCCCGGCACCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAATGCAAATGGTAAGAGCAAGAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGATATCCCAGAGGGGCCATCTTTCATTTGGTGCAGCTGATTCTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCTGGTTCTGTTAAAAGTTCAGCAGCTCCTGGGGGACCATCTCGGAGAAAGAAAGCAGATAAAGATAACCCCTCGATGTCTTCATCTCGAAAATTCATCCGTGCATTGAAGCCATCAATTGGGTTATCAATGGATCTGTTGTTTAGAGGTAAATAA 1776 46.51 MGCVLGRQTADARLGTSGPPRRRRTTDHLSHIDGVNGDRVKKQTTTLENQGVRQDLDSFSVERRRPSPSLFQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGIKFTEPQIFLPELQVLSSFEKKMTNKIACVPLVSVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRFFCPFPLLLFKSSRRVRIRDRVGRAVPAPEANAEIQANLDRWRNVTNANGKSKSEKFPPPHQDGAVGYPPHEISQRGHLSFGAADSSFSSSIFSSKSGSVKSSAAPGGPSRRKKADKDNPSMSSSRKFIRALKPSIGLSMDLLFRGK 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4339570 4343677 - ClCG03G003980.2 Cla03g00375 268875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00375 591 MobiDBLite consensus disorder prediction 537 572 - -
Cla03g00375 591 PANTHER CELL DIVISION PROTEIN KINASE 228 566 - -
Cla03g00375 591 SMART serkin_6 101 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00375 591 Pfam Protein kinase domain 101 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00375 591 MobiDBLite consensus disorder prediction 17 38 - -
Cla03g00375 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Cla03g00375 591 Gene3D Transferase(Phosphotransferase) domain 1 214 446 - -
Cla03g00375 591 MobiDBLite consensus disorder prediction 492 520 - -
Cla03g00375 591 PANTHER OS01G0367700 PROTEIN 228 566 - -
Cla03g00375 591 MobiDBLite consensus disorder prediction 39 56 - -
Cla03g00375 591 SUPERFAMILY Protein kinase-like (PK-like) 94 417 IPR011009 -
Cla03g00375 591 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Cla03g00375 591 ProSiteProfiles Protein kinase domain profile. 101 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00375 591 PANTHER OS01G0367700 PROTEIN 69 216 - -
Cla03g00375 591 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Cla03g00375 591 MobiDBLite consensus disorder prediction 1 59 - -
Cla03g00375 591 PANTHER CELL DIVISION PROTEIN KINASE 69 216 - -
Cla03g00375 591 CDD STKc_CDK9_like 101 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00375 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101205716 956.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00375 Cla-Chr3:4339570 Cla05g00613 Cla-Chr5:5686445 0 dispersed
Cla03g00375 Cla-Chr3:4339570 Cla03g01582 Cla-Chr3:31590266 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g47 . Blo16g00286 . . . Bpe13g00189 . . . Cmo18g00235 . . . . . Cpe20g00292 . . . . . . . . . . . . . . . . . Cone13ag0248 Cone19ag0228 Lsi02g00524 Csa01g00986 Chy12g01147 Cme12g01566 . . Bda11g01584 . . . . . . . . Cma13g00826 Cma18g00299 Car13g00669 . Cpe09g00946 . Bhi08g01533 . . . . . . Cla03g00375 Cam03g0395 Cec03g0381 Cco03g0396 Clacu03g0394 Cmu03g0999 Cre03g0691 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008225 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 0 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80412 PF00069 Pkinase 1.50E-62 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00375 Cla_Chr03 FPKM 23.20093 24.016134 29.223145 28.329361 30.034941 30.478746 33.390556 36.275372 35.38036 35.470474