Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00376 ATGGCAGCTTTTTCTTATCAATACCAACCCTTTCTTCTTGACTCCATTTTCTTGCCCAACAATCCTCTCAAAATGGGAGGCTTTTTTGATGACCAAAATTTCAACACAAATTGTTTCTCTCAATTTTACCCTCAAGACCAACAACAACAACAACAACAACCCATTTACCATTTTCCTGACCTCTCTAAACAAAGCCCTGAATCTTCCACTTTGGTCGACCGATCCGACAGCGCCGAACCGCCGGTCGGAAATCAGTTGAAACCGGCTGTTACGGTTACCGTAACTTCCCCTTGTACTAAGAAAAGGAAGAGCCGGAATAATTCTTCCGCCACCTCCGCTCAATCCAAGGGTACTACTGAGAGCACTGCGAAAAAGCAGAAAAGTAAAGGGGAACACGAAGGGAAAGAAAAAGATCATCAAAAGGCTAAAAATGGGAAGAAATTAGAGGAGAAAAAAATTTTAGAAGAAGGTGGTGCAACCACTGGTTACATTCATGTTAGAGCTAGAAGGGGCCAAGCCACTGACAGCCACAGTCTTGCTGAGAGGGTGCGAAGGGAGAAGATTAGCGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGAAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTCTCTTCGACTTCAGAATGGACTTGGACGGCCTAATGATCCAACCAGAGATGACGTCGTTGAGTAGCATAACACCACAACTTCCAGCGATGGCACAATGTAGCATCGTGGCACCACCGGCGTTGATCGACACGACCCCTTCGACGACTCCATCTCCGGCAATCTCCGCCGCAAATAATTTTCCCTTAATGGACTCTTCAGCTAATTTGTTTCTATTTCAACAAGGGATAAGCGCAAATAATGGCTACTCCCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACGTATGTTACTTCCATTAA 1074 44.23 MAAFSYQYQPFLLDSIFLPNNPLKMGGFFDDQNFNTNCFSQFYPQDQQQQQQQPIYHFPDLSKQSPESSTLVDRSDSAEPPVGNQLKPAVTVTVTSPCTKKRKSRNNSSATSAQSKGTTESTAKKQKSKGEHEGKEKDHQKAKNGKKLEEKKILEEGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPILFDFRMDLDGLMIQPEMTSLSSITPQLPAMAQCSIVAPPALIDTTPSTTPSPAISAANNFPLMDSSANLFLFQQGISANNGYSQSSQDNVKVSSWDVEDQKRKLLISSGIGDNVCYFH 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4364060 4365887 - ClCG03G003990.2 Cla03g00376 268876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00376 357 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 357 - -
Cla03g00376 357 MobiDBLite consensus disorder prediction 88 121 - -
Cla03g00376 357 MobiDBLite consensus disorder prediction 122 154 - -
Cla03g00376 357 CDD bHLH_AtBPE_like 162 247 - -
Cla03g00376 357 MobiDBLite consensus disorder prediction 59 75 - -
Cla03g00376 357 SMART finulus 178 228 IPR011598 GO:0046983
Cla03g00376 357 MobiDBLite consensus disorder prediction 59 154 - -
Cla03g00376 357 Gene3D - 169 240 IPR036638 GO:0046983
Cla03g00376 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
Cla03g00376 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 238 IPR036638 GO:0046983
Cla03g00376 357 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Cla03g00376 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 357 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla03g00376 Cla06g01775 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00376 Cla-Chr3:4364060 Cla09g00792 Cla-Chr9:8020731 9.50E-44 dispersed
Cla03g00376 Cla-Chr3:4364060 Cla06g01775 Cla-Chr6:31204841 2.86E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60785 PF00010 HLH 7.00E-07 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00376 - - csv:101205943 570.081