Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00378 ATGGATCGGAGGAGACCTGCTAGTCCAGTCTACGCCAGGCAGTGGAGTGGCGGCTCCAGCAGCACAGGATCGTCCTCGCCGGTGATGTCGCCGGCTCATCCTCAGTCTCGATTGGGTGCGTCTTCCACCATCAAGCGCGCCCAGAATGTTGCCGCCAAGAAGGCTGCTGAACGTTTGGCTCAGGTTATGGCCTCCACGCATGACCAAGAGGACGACGATGAAGACGATGATCTCAGCTTTCGATTCGGTGCTCCACCTCCTCCTCGTAGTCACTCGTCTTATCCTACTGTTGTCAATAGTAACAATACCAATTCGTTTCATACGATTTCGGGTCCAAGGATTAACAGATCTCCGTCCCCCGCGGATACAGTAGAGTTTGTGATCAATCCCGCGCGGAGCATTTTCCGGCGATCCGTGCGTTCGACCCCGATCATGCCACTGAGTAAACCTTCACTTAGAACTCCAGTCTCCATACCTCCAATTGAACCTCCTTCTAATAGGAATGGAGATAGAAGGTTCACACCTGATATTGGACAGGTCAATTCCAAAGATGCAGGAGATCAGCGGGAAGCTTCTGCACTACGTGATGAGCTTGATATGCTACAAGAAGAGAACGAGAATATACTTGAAAAGCTTCGACTAGCAGAAGAAAAGCGGGAAGAATCGGAGGCTAGAGCTAGAATGCTAGAGAAACAGGTTGCCACTCTTGGTGAGGGTGTGTCCTTGGAAGCTAAATTATTGAGCAGGAAAGAAGCAGCCCTGCGTCAAAGAGAGGCTGCACTCAAAGCTGCGCAACCAACCAAGGACAGTAGAAATGAAGAAATAGCTGCCCTTCGTTCAGAAATCGAGAACCTAAAAGATGAGTCAGCAGCAGCTACAGAACAACTCCGAGAAGCAGAGTCTGAAGCAAAGGCTCTTCGTGTAATGACACAGAGAATGATTTTGACACAGGAAGAGATGGAGGAGGTTGTTTTAAAGAGGTGTTGGCTCGCTCGCTATTGGGGCTTAGCTGTTCAATATGGTAAGAAACACTTTCTAGTTTATAAATGCTTCACAACTAACATACTTGAGTTGTGTGCTTTCTTAAGGCTTAAGTTCTTTGCTTATTGGAATGGTNNNNNNTTACTGAAAAGGAAGATAAAAGAAGGTGGGTGTTGGATGCAGCTGGTTCTTTGGGTAGATCTTTGTTTAAAGCACATTGGTAGGTTGTATAGCATATGTGCGGATATAGCAATCTCAAAACATGAGTATTGGTCTTCTTTAGCTCCTTTGCCATTCGAAGTTGTAATTTCTGCAGGACAGAAGGCTAAGGAGGAGCCTGAAGGTCGAAATGATCAAGATAGGAGTAAGCTCATCCAGGACTTAAATGATCTCTCCGGGGAAGGAAATATTGAGAGTATGCTTTCAGTTGAAATGGGATTGAGAGAATTAGCATCTCTAAAGGTTGAAGATGCAACTGTGCTTGCATTGGCACAACATAGACGTCCAAGTTTGATTCATCAATCAGATTCAAAAGCACTTGCTGATCCGAAGTTTTCTGAGGCTTTTGGTAAGTTGACTGCTGTACCTTATGCACTACACTCATTAGATATCAATCTTGATAGAGTCAATGTACGAAATGTTACTCCAAATGTAGCAACTAATTACATATACCCTATTATTAGGCTGGAATTTGAAAGTTTGTTAGAACTAAGTGAAGCTGAAGCTGAAGATGTTCTTTTTAAGGAGGCTTGGCTTACATACTTTTGGAGAAGAGCGAAGGCATATGGTGTGGATGAGGATGTTGCAGATGAGCGGCTCCAGTTTTGGATCAGTCGTAGTGGACAGCCTCCAACTTCACATGATGCCGTGGATGTTGAACGAGGGCTTGTAGAGCTCAGAAAGCTTGGAATAGAACAACAGCTTTGGGAGGCATCTAGAAAGGAAATCGATCAATCTTCTGCATTCTCACTCATGGTTGCACATTTATTTTCTATCCTTGTGCCTTTATGGACTTCATACCCTATTCTTTCACCCAAAAAATTTAAGGACACAGTTGTACAACCTGTACAACCTATAGAAAGAATCTTGTTGAATTATCTCTTTCTGTCAGCTTTCCTCCATTTCTTTTCCCATTCCCAAGAAACTCTTTTCAAAACAACCCTCACAAATTCAACTCCACCCTTCATCAACATGCTTTCTAGAGTTGGGAACGTTCTTTGGATGGAAAATCGCGACGATGAAGACTCTGCTTCTTGGACTAAAAACAACAGCGACCACAACCATCTCAACCACCCTGCTAATTGCTCTGTTTTGGACAACAAGGACGAAATCACCTCTCTCTCTACCTTCAAATCCATGCTCGAGGTTGAAGACGACTGGTGCATCTCTGCTAATGCCCTCCATAACCATAATCACCACACCGACATCAATGACATTACCTTCTCTCAGAATTTCACCGACCCACCTGACAATTTGTTGCTCCCTCCTGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCCTCTGTCTTCAATAACATTGACCCATCTCAATTGCGCTTCTTTTTACCCCAAACTCGCACTTTGTCTTCACTTCATAAGGTAATTTCTAACAACCCTTTAGACCATGGATTCGATTTGGGAGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTCTGCTCAACGATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGCCAGATGAACACTCCTAATTTGTGCTTAGGCTCTCAATTGACAGCCCCTAATGTGTCCCCAATGACTGAAAATTGTTCGGGTTTAGCTGGATTCCAGAGTTTCGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTAGAATCTTTTCCCACAGTGGGAGCTCAGCCAACTCTGTTTCAGAAGAGGGCAGCTCTAAGGAAGAGTTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTTTTCAAACAGGATTGAAGGGGGCATTGGAAAAAATGAAGTGGGTGATGAAAATGGGAAGAAGAGGAAAATGATTTATGCAGATGAATTGCAAGATACTAGCATCGACACATCTCGTTTTAATTACGATTCTGATGAATTTACTGAGAATACTAACACTAAATTGGATGAGAGTGGTAGAAATGTTGGAAATACATCTAACGCCAATAGTACAGTGACCGGCGGCGACCAGAAGGGGAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCAAAAATCAGCAAAATGGATAGAGCTTCAATTCTTGGGGATGCAATTGAGTACTTGAAGGAACTACTGCAAAGAATCAATGACCTCCATAATGAATTGGAGTTTGCCCCATCTGGGGCAGCCTTGACGCCGGGTGCAAGCTTCCACCCGCTGACTCCAACTCCGCCAAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTAGCTCATTTCCCAGCCCAAATGGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGACGGGCAGTAAATATACACATGTTTTGTGGTCGTCGACCGGGTCTCTTGCTCTCCACAGTTAGGGCATTAGATAATCTTGGATTGGACATCCAACAAGCTGTGATTAGCTGCTTTAATGGTTTTGCCATGGACATTTTTCGAGCAGAGGCTGAGTTCTATGTTGTTCATCAAGAAAACAACTTCATTGTTGATTCAGAAGTAAAATCTTCTGAAATATTATATGCATTGACTTGCTGTTGA 3834 44.57 MDRRRPASPVYARQWSGGSSSTGSSSPVMSPAHPQSRLGASSTIKRAQNVAAKKAAERLAQVMASTHDQEDDDEDDDLSFRFGAPPPPRSHSSYPTVVNSNNTNSFHTISGPRINRSPSPADTVEFVINPARSIFRRSVRSTPIMPLSKPSLRTPVSIPPIEPPSNRNGDRRFTPDIGQVNSKDAGDQREASALRDELDMLQEENENILEKLRLAEEKREESEARARMLEKQVATLGEGVSLEAKLLSRKEAALRQREAALKAAQPTKDSRNEEIAALRSEIENLKDESAAATEQLREAESEAKALRVMTQRMILTQEEMEEVVLKRCWLARYWGLAVQYGKKHFLVYKCFTTNILELCAFLRLKFFAYWNGXXLLKRKIKEGGCWMQLVLWVDLCLKHIGRLYSICADIAISKHEYWSSLAPLPFEVVISAGQKAKEEPEGRNDQDRSKLIQDLNDLSGEGNIESMLSVEMGLRELASLKVEDATVLALAQHRRPSLIHQSDSKALADPKFSEAFGKLTAVPYALHSLDINLDRVNVRNVTPNVATNYIYPIIRLEFESLLELSEAEAEDVLFKEAWLTYFWRRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVDVERGLVELRKLGIEQQLWEASRKEIDQSSAFSLMVAHLFSILVPLWTSYPILSPKKFKDTVVQPVQPIERILLNYLFLSAFLHFFSHSQETLFKTTLTNSTPPFINMLSRVGNVLWMENRDDEDSASWTKNNSDHNHLNHPANCSVLDNKDEITSLSTFKSMLEVEDDWCISANALHNHNHHTDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPQTRTLSSLHKVISNNPLDHGFDLGAEVGFLDVQASNASTLLNDGGGLLTGFTDLSPTSQMNTPNLCLGSQLTAPNVSPMTENCSGLAGFQSFDENLGNALLLNRSKLLRPLESFPTVGAQPTLFQKRAALRKSLADKGSNLGVLSPDGGWFSNRIEGGIGKNEVGDENGKKRKMIYADELQDTSIDTSRFNYDSDEFTENTNTKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFAPSGAALTPGASFHPLTPTPPSLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEAEFYVVHQENNFIVDSEVKSSEILYALTCC 1277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4383133 4399514 + ClCG03G004000.2 Cla03g00378 268878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00378 1277 Coils Coil 268 309 - -
Cla03g00378 1277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1086 1149 IPR036638 GO:0046983
Cla03g00378 1277 CDD ACT_UUR-ACR-like 1203 1258 - -
Cla03g00378 1277 PANTHER MYOSIN 562 647 - -
Cla03g00378 1277 MobiDBLite consensus disorder prediction 93 117 - -
Cla03g00378 1277 PANTHER FAS-BINDING FACTOR-LIKE PROTEIN 562 647 IPR040321 GO:0000911
Cla03g00378 1277 PANTHER FAS-BINDING FACTOR-LIKE PROTEIN 1 341 IPR040321 GO:0000911
Cla03g00378 1277 Coils Coil 1122 1142 - -
Cla03g00378 1277 Gene3D - 1077 1146 IPR036638 GO:0046983
Cla03g00378 1277 SMART finulus 1089 1138 IPR011598 GO:0046983
Cla03g00378 1277 MobiDBLite consensus disorder prediction 1046 1076 - -
Cla03g00378 1277 CDD bHLH_AtAMS_like 1086 1150 - -
Cla03g00378 1277 MobiDBLite consensus disorder prediction 146 199 - -
Cla03g00378 1277 MobiDBLite consensus disorder prediction 13 48 - -
Cla03g00378 1277 PANTHER MYOSIN 404 516 - -
Cla03g00378 1277 Pfam Helix-loop-helix DNA-binding domain 1090 1132 IPR011598 GO:0046983
Cla03g00378 1277 MobiDBLite consensus disorder prediction 1 117 - -
Cla03g00378 1277 PANTHER FAS-BINDING FACTOR-LIKE PROTEIN 404 516 IPR040321 GO:0000911
Cla03g00378 1277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1083 1132 IPR011598 GO:0046983
Cla03g00378 1277 Coils Coil 191 232 - -
Cla03g00378 1277 PANTHER MYOSIN 1 341 - -
Cla03g00378 1277 MobiDBLite consensus disorder prediction 1046 1083 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01597 Cla-Chr2:30678374 Cla03g00378 Cla-Chr3:4383133 4.73E-08 dispersed
Cla03g00378 Cla-Chr3:4383133 Cla08g01184 Cla-Chr8:24732139 2.54E-32 dispersed
Cla11g01141 Cla-Chr11:23611726 Cla03g00378 Cla-Chr3:4383133 1.13E-17 dispersed
Cla02g00417 Cla-Chr2:4095436 Cla03g00378 Cla-Chr3:4383133 5.48E-23 transposed
Cla05g01333 Cla-Chr5:17163333 Cla03g00378 Cla-Chr3:4383133 6.77E-148 transposed
Cla05g02543 Cla-Chr5:36774438 Cla03g00378 Cla-Chr3:4383133 4.86E-23 transposed
Cla03g00378 Cla-Chr3:4383133 Cla06g00160 Cla-Chr6:1799807 1.56E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60786 PF00010 HLH 5.80E-09 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00378 - - csv:101206422 936.021