Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00379 ATGGAAACTGGGATGGAAGAAGACGACTCCGCCTCCGAACTCTTGAGGGACAGATTCCGACTCTCCACCATTTCTATTGCTGAAGCTGAAGCGAAGAGAAGCGGCATGGAAATTTCTGAACCCGTGATGATTTGTGTTGCTGATTTAGCCTTCAAATATACAAATAACGGAATGATAACTTGTGTAGCAGAACAGTTGGCAAAGGACCTTGAGTTATTTGTTCAGCATGCTGGTCGAAAATCTGTGAATACAGAAGATGTAATACTATCAGCCCATAGAAACGAGCATTTGGCTGCTATATTAACATCCATTTGCAATGATCTAAAGACAAAAGAACCTCAAAGTGAGAGAAAGCGAAAAAAGGCACAAAAAAAAGAAGATAGAGATAGAGGTGCAGTGCATATTACCGACGCCTAA 417 41.25 METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMICVADLAFKYTNNGMITCVAEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQSERKRKKAQKKEDRDRGAVHITDA 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4399872 4402038 - ClCG03G004020.1 Cla03g00379 268879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00379 138 Gene3D Histone, subunit A 1 125 IPR009072 GO:0046982
Cla03g00379 138 PANTHER CENTROMERE PROTEIN S 5 129 - -
Cla03g00379 138 SUPERFAMILY Histone-fold 59 97 IPR009072 GO:0046982
Cla03g00379 138 MobiDBLite consensus disorder prediction 110 138 - -
Cla03g00379 138 Pfam CENP-S protein 15 97 IPR029003 GO:0071821
Cla03g00379 138 PANTHER CORTISTATIN 5 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00379 K11511 APITD1, CENPS, MHF1; centromere protein S - csv:101206659 228.024
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g21 . . . . . Bpe13g00182 Bma06g00286 . . Cmo18g00239 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0264 . Lsi02g00528 Csa01g00991 Chy12g01143 Cme12g01561 . . Bda11g01572 . . . . . Sed01g1538 . . . Cma18g00291 . Car18g00251 Cpe09g00941 . Bhi08g01540 Tan05g3012 Cmetu12g0674 Lac10g0614 . . . Cla03g00379 Cam03g0399 Cec03g0385 Cco03g0400 Clacu03g0398 Cmu03g1003 Cre03g0695 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012248 1 2 0 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00379 Cla_Chr03 FPKM 0.0 0.0 5.266067 5.087088 55.603859 60.133217 54.352398 0.551217 0.0 0.134513