Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00385 ATGAAGTGGGGTGTTCTTCTTGTCCTTATTCTGGCCTCCGCCGCCGTGTCGTGGGCCAACAAAGATTTGGAGGATAACGGAGAAGAATACTCGAGCCTTGAGGTTCCGCAGTTGCAGGAGTTTTCAGCTTTCGGGGACTTTCTTTCTTATGGGTTCTACCAGAAAAATTGTCCCGGCGTCGACGGCATCATTCACCGTAAACTCAAGCAGTGGTTCGATAAAGATAACTCCATCGCCGCCGCCCTCTTGAGATTGCACTTCCATGACTGCGTCGTTAGGGGCTGCGACGGTTCTATTCTTCTAGATTACGAGGGAAGTGAGAGAAGGGCTCCAGCGAGCAAGACGCTTAGAGGTTTCGAAGTGATCGACGACATCAAAGCCGAGTTAGAGAAACAGTGCCCTAAAACAGTTTCTTGCGCAGATATTCTAACCGCCGCCGCCAGAGAAGCCACCGTCCTCATCGGCGGCCCATATTGGATGGTACCTTATGGAAGAAGAGACGGAGTGGATTCCATTGCCAAAGAAACTGAGTTAGTACCATTGGGTATTGAAGACATCACTTCTCTCATTGAACTTTACCAATCTCTCGGCTTGAATGTGTTAGATTTGGTCGTTCTTTCAGGGGCACACACGATTGGAAGGGCAACATGTGGAGCGATACAAAACAGGCTTTACAATTATAGCGCAACGGGGAAGCCAGACCCATCGTTGAGCCCAAAATACTTAAACTTCTTGAGAAGAAAGTGCCGATGGGCGTCGGACTACGTGGATCTTGACGCAACAACGCCCAACACATTCGACAACGCCTACTACTCTAATCTCCCAAAGAAGATGGGTCTTTTGTCAACTGATTCTGCTCTCTACACCGATCCAAGAACTTCCCCCATCGTCAAAGCTTTGGCCTATCAGCCCTCCATTTTCCGTCACCAGTTTGCTGTGGCCATGGCTAAGCTTGGGAACGTTCAAGTTCTTACTGATCTTTTCGAAGGCGAGATTCGAACCAACTGCAGTTGTAGAAATTCTCATTGA 1029 48.69 MKWGVLLVLILASAAVSWANKDLEDNGEEYSSLEVPQLQEFSAFGDFLSYGFYQKNCPGVDGIIHRKLKQWFDKDNSIAAALLRLHFHDCVVRGCDGSILLDYEGSERRAPASKTLRGFEVIDDIKAELEKQCPKTVSCADILTAAAREATVLIGGPYWMVPYGRRDGVDSIAKETELVPLGIEDITSLIELYQSLGLNVLDLVVLSGAHTIGRATCGAIQNRLYNYSATGKPDPSLSPKYLNFLRRKCRWASDYVDLDATTPNTFDNAYYSNLPKKMGLLSTDSALYTDPRTSPIVKALAYQPSIFRHQFAVAMAKLGNVQVLTDLFEGEIRTNCSCRNSH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4437906 4440833 + ClCG03G004090.1 Cla03g00385 268885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00385 342 CDD secretory_peroxidase 48 337 IPR033905 GO:0004601|GO:0042744
Cla03g00385 342 PANTHER PEROXIDASE 38 339 - -
Cla03g00385 342 SUPERFAMILY Heme-dependent peroxidases 48 340 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 Gene3D - 51 340 - -
Cla03g00385 342 PANTHER PEROXIDASE 25-RELATED 38 339 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 ProSiteProfiles Plant heme peroxidase family profile. 47 340 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 Pfam Peroxidase 66 301 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Plant peroxidase signature 117 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Plant peroxidase signature 136 146 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Plant peroxidase signature 155 170 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Plant peroxidase signature 201 213 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Plant peroxidase signature 257 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Plant peroxidase signature 273 290 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Plant peroxidase signature 313 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601
Cla03g00385 342 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Haem peroxidase superfamily signature 137 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Haem peroxidase superfamily signature 155 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Haem peroxidase superfamily signature 202 217 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 PRINTS Haem peroxidase superfamily signature 259 274 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00385 342 Gene3D Peroxidase, domain 2 180 318 - -
Cla03g00385 342 ProSitePatterns Peroxidases proximal heme-ligand signature. 202 212 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01842 Cla-Chr2:33571663 Cla03g00385 Cla-Chr3:4437906 1.58E-134 dispersed
Cla03g00385 Cla-Chr3:4437906 Cla02g00175 Cla-Chr2:1795194 2.89E-33 dispersed
Cla03g00385 Cla-Chr3:4437906 Cla01g01632 Cla-Chr1:31121716 1.70E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00385 K00430 - csv:101208042 637.106