Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00394 ATGCTTAGGGTTTGGGTAATGGCTCTGACAGAGGTGAAAACGCTGTATCTGCAATTTTTTCTGCTTTTCATCCTAATTTGGGTATCCAGAATGGGCGTCTCGGACACTATGTTCAACGACTCCTTAAGTGGGCATTCGGTTGTTTCCAGGAATGAAAATCCAAAAGGACGGTGTCCACATGGTTGGTTTATTAGCCCAAACAAGACCAAGTGCTATGGTTTCATGTCGAGTCCAAAATCATGGAATGATTCAGAGACCCAATGTAATGGTTTTGGTGGGAACTTAGCAGCTCTCATAACATGTCAAGAGTTTAGCTTTGCACAAGATCTATGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCATTCAACTCTTCAAATGATTTTGTTTGGAAATGGTCAGATAATGTATCGAAATGGAATGATTCCATTATTCCCAGAACAACTTTGCAATCTAACTGCAAAAATGTCTCTTGCCGCATGAATGATTTGGTTGAAACATGTACTTTAATATTTGGGGGACCAGCAACACCGTTCCTTAGGGATGAGAAATGCAGCAGTTCTCACCCTTTTATATGCATGATAAATCTAGATGATAGATGCCATCGCATGCACTGCCACAAGGATTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACAACGTTAGCTGTGGTGATTTGGCTTCTTGCCCACAAGAGGAGCAAGAAACGGAGAAGGTCCCGGAAGCCATCCAACCCAGCAGCTTCTGCACTGGTACCCCCCTCGTGGAAGGTGTTTACCAAAGAAGAGCTAAGATCAATAACAAAAAACTTCAGTGAGGGAAACCGTCTTCTTGGAGACACAAAAACGGGTGGTACATACATTGGACTTTTGCCTGATGGTTCAAGAGTTGCAATTAAAAGGTTGAAGAAGTCCAGCTTTCAGAGGAAAAAAGAGTTTCATTCCGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTAGATAGATGGCTTCACCATGTACCAAGAGGTGGTCGATACTTAGATTGGACCATGAGAATGAAAATTGCTACAACTCTTGCCCAAGGGATTGCGTTCCTTCATGACAAGGTCAAGCCACATGTGGTACATCGTGATATCCGTGCGAGTAATGTACTTCTTGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGCCTATCGAAATTGGTAGCATATGAAGTGATGCATGAGAGGACAGTGATGGCAGGAGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACCACAAAAAGTGATGTCTATAGTTTTGGTGTGCTACTGCTTGAAATTGTGACCGGTCGAAGACCTGCACAGGCAGTTGATTCGGTTGGTTGGCAGAGCATTTTTGAATGGGCAACGCCTCTCGTGCAGGCTCACCGTTACCTAGATCTCTTGGATCCTCATATAACAGCCACTTCCACTTCTGAAATTCCAGAGGCTGGTGTTCAGAAAGTCGTGGACCTTGTGTATGCTTGCACACAGCATGTTCCGTCCATGCGTCCTAGAATGTCGCACGTTGTTCATCAGCTGCAACAATTGGCTCCCTCACCTCTCACACATCTCACTATGAAGTAA 1707 44.05 MLRVWVMALTEVKTLYLQFFLLFILIWVSRMGVSDTMFNDSLSGHSVVSRNENPKGRCPHGWFISPNKTKCYGFMSSPKSWNDSETQCNGFGGNLAALITCQEFSFAQDLCNGTLGGCWVGGRAFNSSNDFVWKWSDNVSKWNDSIIPRTTLQSNCKNVSCRMNDLVETCTLIFGGPATPFLRDEKCSSSHPFICMINLDDRCHRMHCHKDYLVILAVVSGLIFCTTLAVVIWLLAHKRSKKRRRSRKPSNPAASALVPPSWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYIGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRYLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTHLTMK 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4515225 4518580 + ClCG03G004190.2 Cla03g00394 268894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00394 568 Gene3D - 41 199 IPR016186 -
Cla03g00394 568 SUPERFAMILY Protein kinase-like (PK-like) 251 554 IPR011009 -
Cla03g00394 568 SUPERFAMILY C-type lectin-like 58 197 IPR016187 -
Cla03g00394 568 SMART tyrkin_6 281 554 IPR020635 GO:0004713|GO:0006468
Cla03g00394 568 ProSiteProfiles C-type lectin domain profile. 67 196 IPR001304 -
Cla03g00394 568 PANTHER - 11 558 - -
Cla03g00394 568 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 558 - -
Cla03g00394 568 Pfam Protein tyrosine and serine/threonine kinase 300 554 IPR001245 GO:0004672|GO:0006468
Cla03g00394 568 ProSitePatterns Tyrosine protein kinases specific active-site signature. 400 412 IPR008266 GO:0004672|GO:0006468
Cla03g00394 568 Gene3D Transferase(Phosphotransferase) domain 1 354 559 - -
Cla03g00394 568 ProSiteProfiles Protein kinase domain profile. 278 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00394 568 Gene3D Phosphorylase Kinase; domain 1 236 353 - -
Cla03g00394 568 Pfam Lectin C-type domain 78 196 IPR001304 -
Cla03g00394 568 SMART CLECT_2 58 196 IPR001304 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00394 Cla-Chr3:4515225 Cla07g01184 Cla-Chr7:28822190 3.58E-66 dispersed
Cla03g00394 Cla-Chr3:4515225 Cla05g02353 Cla-Chr5:35102124 7.72E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80414 PF07714 PK_Tyr_Ser-Thr 1.90E-40 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00394 - - csv:101218425 1045.42