Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00423 | ATGGCCTCAAAATCCTCCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAGTTCCTCCCTCCAAGATTACTACACTCCCAACAAGAAAAATATGAACATAATCGACTCTTGCTGGCGAAAAACCTCCAACTGGGCCAAAAACCGCCAAGCCTTAGCCGATTGCGCCGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACGTCGTCACCGACCCTTCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAAACAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTACAAGACCATTGATGGGCGTGGAGTTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTTCAAAGGGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGTAAAGCTGGGCTTGTTAGAGACAGTGTTTCGCATGTTGGGAAGCGACAAGGGTCTGATGGTGATGCTATTTCTGTGTTCGGTTCTTCCCATGTTTGGATTGATCATTGTTTCTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTCTCCCAACATGATAAGGTGATGTTACTTGGACATAATGATGGGTTCACTGAAGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTCGGTGCTGGCCTTATCGAGAGGATGCCAAGGGTTAGGTTTGGTTATGCCCATGTAGCGAACAATAGATACGACGAGTGGAAAATGTATGCCATTGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCGAAATTCTTATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCACCCCAATTTACACAAAAGCTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCTGCTTTGACTGAAAATGCAGGCCCACTTCCTTGTTTAATCGGCAAACCTTGCTAA | 1146 | 44.07 | MASKSSHLLLILLFILSFISSSLQDYYTPNKKNMNIIDSCWRKTSNWAKNRQALADCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGVKVEIAYGPCITVQRVSHVIIHGISIHDCKPGKAGLVRDSVSHVGKRQGSDGDAISVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTEDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPRNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCTPIYTKAQSFPVAPGSMVPALTENAGPLPCLIGKPC | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4856036 | 4858053 | + | ClCG03G004510.1 | Cla03g00423 | 268923 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00423 | 381 | PANTHER | PECTATE LYASE 16-RELATED | 21 | 379 | - | - | |
Cla03g00423 | 381 | Pfam | Pectate lyase | 115 | 299 | IPR002022 | - | |
Cla03g00423 | 381 | Gene3D | - | 34 | 374 | IPR012334 | - | |
Cla03g00423 | 381 | PANTHER | PECTATE LYASE 18-RELATED | 21 | 379 | IPR045032 | GO:0030570 | |
Cla03g00423 | 381 | SUPERFAMILY | Pectin lyase-like | 34 | 372 | IPR011050 | - | |
Cla03g00423 | 381 | PRINTS | Pollen allergen Amb family signature | 80 | 105 | IPR018082 | - | |
Cla03g00423 | 381 | PRINTS | Pollen allergen Amb family signature | 116 | 132 | IPR018082 | - | |
Cla03g00423 | 381 | PRINTS | Pollen allergen Amb family signature | 322 | 346 | IPR018082 | - | |
Cla03g00423 | 381 | PRINTS | Pollen allergen Amb family signature | 282 | 301 | IPR018082 | - | |
Cla03g00423 | 381 | PRINTS | Pollen allergen Amb family signature | 260 | 279 | IPR018082 | - | |
Cla03g00423 | 381 | PRINTS | Pollen allergen Amb family signature | 180 | 201 | IPR018082 | - | |
Cla03g00423 | 381 | PRINTS | Pollen allergen Amb family signature | 57 | 74 | IPR018082 | - | |
Cla03g00423 | 381 | PRINTS | Pollen allergen Amb family signature | 352 | 375 | IPR018082 | - | |
Cla03g00423 | 381 | SMART | amb_all | 108 | 305 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00423 | Cla-Chr3:4856036 | Cla03g00314 | Cla-Chr3:3763924 | 1.30E-150 | dispersed | |
Cla04g01222 | Cla-Chr4:27334439 | Cla03g00423 | Cla-Chr3:4856036 | 9.66E-108 | transposed | |
Cla01g02123 | Cla-Chr1:35485956 | Cla03g00423 | Cla-Chr3:4856036 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00423 | K01728 | - | csv:101211379 | 734.947 |