Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00423 ATGGCCTCAAAATCCTCCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAGTTCCTCCCTCCAAGATTACTACACTCCCAACAAGAAAAATATGAACATAATCGACTCTTGCTGGCGAAAAACCTCCAACTGGGCCAAAAACCGCCAAGCCTTAGCCGATTGCGCCGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACGTCGTCACCGACCCTTCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAAACAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTACAAGACCATTGATGGGCGTGGAGTTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTTCAAAGGGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGTAAAGCTGGGCTTGTTAGAGACAGTGTTTCGCATGTTGGGAAGCGACAAGGGTCTGATGGTGATGCTATTTCTGTGTTCGGTTCTTCCCATGTTTGGATTGATCATTGTTTCTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTCTCCCAACATGATAAGGTGATGTTACTTGGACATAATGATGGGTTCACTGAAGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTCGGTGCTGGCCTTATCGAGAGGATGCCAAGGGTTAGGTTTGGTTATGCCCATGTAGCGAACAATAGATACGACGAGTGGAAAATGTATGCCATTGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCGAAATTCTTATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCACCCCAATTTACACAAAAGCTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCTGCTTTGACTGAAAATGCAGGCCCACTTCCTTGTTTAATCGGCAAACCTTGCTAA 1146 44.07 MASKSSHLLLILLFILSFISSSLQDYYTPNKKNMNIIDSCWRKTSNWAKNRQALADCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGVKVEIAYGPCITVQRVSHVIIHGISIHDCKPGKAGLVRDSVSHVGKRQGSDGDAISVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTEDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPRNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCTPIYTKAQSFPVAPGSMVPALTENAGPLPCLIGKPC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4856036 4858053 + ClCG03G004510.1 Cla03g00423 268923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00423 381 PANTHER PECTATE LYASE 16-RELATED 21 379 - -
Cla03g00423 381 Pfam Pectate lyase 115 299 IPR002022 -
Cla03g00423 381 Gene3D - 34 374 IPR012334 -
Cla03g00423 381 PANTHER PECTATE LYASE 18-RELATED 21 379 IPR045032 GO:0030570
Cla03g00423 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
Cla03g00423 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Cla03g00423 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Cla03g00423 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cla03g00423 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Cla03g00423 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Cla03g00423 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Cla03g00423 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cla03g00423 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cla03g00423 381 SMART amb_all 108 305 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00423 Cla-Chr3:4856036 Cla03g00314 Cla-Chr3:3763924 1.30E-150 dispersed
Cla04g01222 Cla-Chr4:27334439 Cla03g00423 Cla-Chr3:4856036 9.66E-108 transposed
Cla01g02123 Cla-Chr1:35485956 Cla03g00423 Cla-Chr3:4856036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00423 K01728 - csv:101211379 734.947