Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00441 ATGTCTTGTTCAAATCTGACTATGTGGGTGTCTTCAAAACCCACCGTTTCTGATGCATCCTCCCTTTCTTTCCGCTCATTTTTGAGCCCTTTTCAGCTTCCTTCCCAGAATTCGAGCTCAACTTACCCTGGCCGATCATGCTCAGTTTCTCCAATCCACTGTGGTCTTCGGGAGCTTCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTAAATGGAAGACCCTTCTCAGAAGCTTTGGTTGAGGTTCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTCGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGACCGAGGTCTTTGCGGTGGTTTCAACAACAGTATCATTAAGAAAGCTGAAGCTAGAATATCGGAATTGAAGGCACTTGGTCTTGATTACACTGTCATTAGCGTTGGTAAGAAGGGTAATTCCTATTTCCTTCGCCGGCCTTACATTCCAGTTGATAAGTTCCTTGAAGGTGGCACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTACACCAAATTTGTGTCTTTGGTAAAATCTGATCCTGTTATTCACACTCTTCTTCCTCTCTCACCCAAGGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTTGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTCTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCACTGGCCAGTGAACTTGCAGCTAGAATGAGTGCTATGAGTAATGCAACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTTTACAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1131 42.97 MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSSSTYPGRSCSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNSIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5010091 5011221 - ClCG03G004720.1 Cla03g00441 268941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00441 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 272 375 - -
Cla03g00441 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla03g00441 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 375 - -
Cla03g00441 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla03g00441 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 122 - -
Cla03g00441 376 Gene3D - 123 246 - -
Cla03g00441 376 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 55 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla03g00441 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla03g00441 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla03g00441 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla03g00441 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla03g00441 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla03g00441 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla03g00441 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cla03g00441 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01157 Cla-Chr4:26756680 Cla03g00441 Cla-Chr3:5010091 6.50E-29 transposed
Cla10g00504 Cla-Chr10:6687108 Cla03g00441 Cla-Chr3:5010091 4.24E-151 transposed
Cla01g02144 Cla-Chr1:35626557 Cla03g00441 Cla-Chr3:5010091 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00441 K02115 - csv:101214408 671.774