Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00460 ATGTTTGGAGCACATGGTTTCGAAGATCATCATGAGGATCTACTACTGGAGATGACCCAGAAAAATTTTGAATGTGAACTGGAAAAATTTGGAGAAGATGAGTTCGAGAGTAGATCGGTGACCGACGCCATGGAAGCTCCTTTGGGAGAGGAACTTTGTGTTCTGAATCAGAGAAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATACAGGAAATGGAAGCGTTTTTTAAGGAGTGTCCACATCCGGATGACAAGCAAAGAAAGCAGCTGAGCCGTGAGTTAGGACTCGAACCCCTCCAGGTCAAGTTCTGGTTCCAAAACAAGCGCACACAAATCAAGGCTCAACAAGAACGGCATGAGAATGCAATATTGAAAGCTCAAAACGAGAAATTAAGAGCAGAGAACATGAGGTACAAAGAAGCTCTAAGCAATACAAGTTGCCCTAATTGTGGAGGTCCTGCTGCTCTTGGTGAAATGTCCTTTGATGCCCAACATTTGAGAATTGACAATGCACATTTAAGAGACGAGATAGAGAGATTAAACAGTAGTAGCAAATATGGTGGGAAGGCATGGGGTTCTCATTCTCATATGGTTCCATGTGGAGGGCAGCTTGATCATCTTGGGGTTGGAAGATCATCATTAAAGCCCCAACAAGCTGATCATTTGTTAGGGGAAATGTATGGAGGAGTGGGAGAGACAATGTTAAAAAAGTCTGTGACTACTGAAATTGATAAGCCAGTAATTGTTGAGCTTGCTGTTTCAGCCATGGAAGAAGTTTGTAGAATGGCTCAAGCAGGTGAGCCGTTGTGGGTTACTGGTGAAAACTCCATGGAAATGCTGAATGAAGATGAGTACTTGAGGACTTACTCTACACAAATAGGCCCTAGAATTGTGGGGCTTAGCTTTGAAGCTTCAAGGCAAACCTCCATTCTTGCTTTCAATCATTTAAAACTTGTCCATGTTCTCATGGACGTGAATCAATGGTCAACCATATTTTGTGGGATTGTTTCAAGAGCATTGACACTTGAAGTCTTATCAACCGGAGTTGGTGGCGACTATAATGGAGCTCTGCATGTCATGACGGCCGAGTTTCAAGTTCCTTCTCCCCTGGTTCCGACTCGAGAAAATTACTTCGTGAGATACTGCAAGCAGCAGGCAGACCGGAGTTGGGCGGTGGTCGATGTTTCGCTTGATTATTTACGCCCCACACCTACTTCAAGGACTCGAAGAAGACCATCCGGTTGTTTAATCCAAGAACTACCAAATGGTTGCTCAAAGGTGACTTGGGTGGAACATGTAGAAGTGGATGATCGAGCAGTACACAATTTGTACAAACGAGTGGTCTCATGTGGGCTTGCCTTTGGCGCAAAACGATGGATGGCTACTCTTGATCGACAGTGCCAACGCTTAACCAACTCCTCCTCTACCAACATTGCTGCACTAGATATTTGCGGGCAAGAGGGGAGGAAGAGCGTAATGAAGTTAGCAGAGAGAATGGTGAGGAGCTTCTGCAGTGGCGTTGGGGCTGCTACTGCACACAACTGGACTACATTATCCACCATTGATTCCGACAATGTTCGAGTCATGGCGAGAAAGAGCCTCGACGACCCTGGCCGACCTCCTGGAATTGTTCTCAATGCAGCAACTTCTTTCTGGATTCCAATTCCCCCTAACAGAGTCTTCCATTTCCTCCGAGATCAAAACACCCGCAATCAGTGGGATATACTTTCGAACGGTGGATTAGTCCAAGAAATGGCTCGCATTGGCAACGATCGAAACCCAGGAAACTGTGTCTCATTACTTCGTGTTAACGTAAGTGGTTATTCAACTATCATTTTTGCGTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAAAGTGCAAATTCAAGTCAGAGCAACATGTTAATACTACAAGAGAGCTGCAGCGACGACATCAGCGGTTCCTACATAATCTACGCCCCAGTGGACACCGTCGCCATGAACATGGTCTTGAGCGGCGGAGACCCTGATTACGTGGCTCTCTTGCCATCCGGATTCGCCATTCTCCCTGATGGGCCGCCCATTGGGGCTGATGGGCCTTCAGGAATTCTCGAATTCGGATCCGGTGGTTCCTTGTTGACCGTTGCTTTTCAGATATTAGTGGATTCAGCTCCAACTGCCAAATTGTCTCTTGGGTCCGTGGCTACGGTTAACAGCCTCATCAAGTGCACGAAAAACAGAGTCAAAGGGGAAGAGGAGTCAAAAACGAACCTTGTATTATCCTTGGCCTTGTGA 2304 45.88 MFGAHGFEDHHEDLLLEMTQKNFECELEKFGEDEFESRSVTDAMEAPLGEELCVLNQRNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIKAQQERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEMSFDAQHLRIDNAHLRDEIERLNSSSKYGGKAWGSHSHMVPCGGQLDHLGVGRSSLKPQQADHLLGEMYGGVGETMLKKSVTTEIDKPVIVELAVSAMEEVCRMAQAGEPLWVTGENSMEMLNEDEYLRTYSTQIGPRIVGLSFEASRQTSILAFNHLKLVHVLMDVNQWSTIFCGIVSRALTLEVLSTGVGGDYNGALHVMTAEFQVPSPLVPTRENYFVRYCKQQADRSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGCSKVTWVEHVEVDDRAVHNLYKRVVSCGLAFGAKRWMATLDRQCQRLTNSSSTNIAALDICGQEGRKSVMKLAERMVRSFCSGVGAATAHNWTTLSTIDSDNVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRNQWDILSNGGLVQEMARIGNDRNPGNCVSLLRVNVSGYSTIIFASSSSSSSSSSSSSSSSSKSANSSQSNMLILQESCSDDISGSYIIYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPPIGADGPSGILEFGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTKNRVKGEEESKTNLVLSLAL 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5175541 5183070 - ClCG03G004930.1 Cla03g00460 268960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00460 767 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Cla03g00460 767 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Cla03g00460 767 MobiDBLite consensus disorder prediction 618 638 - -
Cla03g00460 767 CDD homeodomain 60 119 IPR001356 GO:0003677
Cla03g00460 767 SMART HOX_1 59 122 IPR001356 GO:0003677
Cla03g00460 767 Coils Coil 166 186 - -
Cla03g00460 767 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Cla03g00460 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 635 753 IPR042160 -
Cla03g00460 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 613 IPR042160 -
Cla03g00460 767 SMART START_1 253 472 IPR002913 GO:0008289
Cla03g00460 767 SUPERFAMILY Bet v1-like 496 752 - -
Cla03g00460 767 Coils Coil 112 147 - -
Cla03g00460 767 Gene3D - 311 473 IPR023393 -
Cla03g00460 767 Pfam START domain 254 472 IPR002913 GO:0008289
Cla03g00460 767 Gene3D - 54 135 - -
Cla03g00460 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 635 753 - -
Cla03g00460 767 SUPERFAMILY Bet v1-like 244 473 - -
Cla03g00460 767 CDD START_ArGLABRA2_like 248 471 - -
Cla03g00460 767 SUPERFAMILY Homeodomain-like 47 119 IPR009057 -
Cla03g00460 767 ProSiteProfiles START domain profile. 244 475 IPR002913 GO:0008289
Cla03g00460 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 24 613 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02157 Cla03g00460 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00833 Cla-Chr2:11320437 Cla03g00460 Cla-Chr3:5175541 0 dispersed
Cla03g00460 Cla-Chr3:5175541 Cla05g00862 Cla-Chr5:8530092 0 dispersed
Cla07g00126 Cla-Chr7:1439329 Cla03g00460 Cla-Chr3:5175541 6.99E-15 dispersed
Cla01g02157 Cla-Chr1:35717070 Cla03g00460 Cla-Chr3:5175541 0 wgd
Cla02g00180 Cla-Chr2:1839253 Cla03g00460 Cla-Chr3:5175541 0 wgd
Cla03g00460 Cla-Chr3:5175541 Cla05g01515 Cla-Chr5:24676418 7.59E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60790 PF01852 START 1.40E-48 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00460 K09338 - csv:101212604 1298.11