Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00476 ATGTTCCACTCAAGCCTTCTCTTTTCTATCATCATCTTCTCCTTCTTCCTCTTCATCAGCCCTGCAATTCCTCAGCCAAATACCAATTGTTCAAACGACAATGACAATTGCACAGCCAGCAGCACCTACAGAGCCACAATTATTACACCCAATTGTAATCTTGGCTATGAGATTATCAATTTCTTTGACTCTGCAGCTGTTTCCAGAGTTTCTCGGTCGACCTCGCCGCCGACACCGCCATCCCCTCTCTTGCCACTCTCACCTCCCTCTCTTTCACCAAATACAACAACCAATGTCAAAGAAAAGGAGTCGAAGAGATTGAAGATTGTCATCATTATAGTTCTCCCAGTGGCTGTTGTAGTTGTGGTATTAATTGTCAGCATCTTCATCTTTTTAAGAGCAAGAAAACAAAGGGATGGAGTTGCAAGTTTACAAGTGGATGACACTGCAGATTTTGAAACTTTAGTATTTGACATCAGTACTATAAGAACTGCAATAGATGACTTCTCAGATGAAAATTATATCGGACAAGGTAGATTTGGAGCTGTTTACAAGGGAAGCCTTGTTAATGGACAAGAAATAGCAGTGAAGTTTCTCAAAAAGAACCCCATGGAAGGAGAGAGTGAGTTTAAGAATGAAGTCCTGTCAATGGCCAAACTTCAACACCGGAATTTAGTTCGGTTTCTCGGTTTCTGCCTCCACAAACACATGATGATTTTCGTGTCCGAGTTCGTGCAAAACTCAAGTCTTGATAAATTCATATTTGAGCTATTGAAAGGTCAAGATTTGGACTGGGGAACACGCTACAAAATCATTCAAGGCATTGCTACAGGCCTTGTTTATCTTCATCAAGATTCTCAAATTAAAGTTGTTCATAGAGATCTCAAAGCTACAAATATTTTATTAGATGCACAAATGAATCCTAAAATTTCTGATTTTTTCATGGTAAAGTTGTTTCAAGAAGGTCCAGCTCAAGAAAATACATGTCTGGGATACATGGCTCCGGAATATCTTGTCTCCGGAATGTCGTCAAAAAAGTCGGATGTGTTTAGTTTCGGTGTGTTAGTTATTGAGATTGTGACTGGCCAAAAAATCACATCTTTCTGCGAGGAAAATGAGGGAAAGGACATATATGATCTTATATGCTATGTATGGAGAAACTGGAGGGCAGGAACAATACTAAATGTTGTAGATCCTATATTGCGAGGTGGGTCAAGTAATGAAATAAAGAAATGTATCAACATTGGATTGCTTTGTGCTCAAGTAAATAAAGCTAACAGGCCAACTATGGAAACAGTACTTCTCATGCTTAATAGTGACACAATCACTCTACCAATACTTTCTCCGCTAGGTGATTACATGAATAAGAGTCCCAAATCGGACATGTCTTCTTCACAAGAGAGGTCTTCTTCCCATGTAATAGAGATAGAATGA 1434 39.26 MFHSSLLFSIIIFSFFLFISPAIPQPNTNCSNDNDNCTASSTYRATIITPNCNLGYEIINFFDSAAVSRVSRSTSPPTPPSPLLPLSPPSLSPNTTTNVKEKESKRLKIVIIIVLPVAVVVVVLIVSIFIFLRARKQRDGVASLQVDDTADFETLVFDISTIRTAIDDFSDENYIGQGRFGAVYKGSLVNGQEIAVKFLKKNPMEGESEFKNEVLSMAKLQHRNLVRFLGFCLHKHMMIFVSEFVQNSSLDKFIFELLKGQDLDWGTRYKIIQGIATGLVYLHQDSQIKVVHRDLKATNILLDAQMNPKISDFFMVKLFQEGPAQENTCLGYMAPEYLVSGMSSKKSDVFSFGVLVIEIVTGQKITSFCEENEGKDIYDLICYVWRNWRAGTILNVVDPILRGGSSNEIKKCINIGLLCAQVNKANRPTMETVLLMLNSDTITLPILSPLGDYMNKSPKSDMSSSQERSSSHVIEIE 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5303470 5305540 + ClCG03G005055.1 Cla03g00476 268976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00476 477 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 25 40 465 - -
Cla03g00476 477 Gene3D Phosphorylase Kinase; domain 1 133 244 - -
Cla03g00476 477 SMART serkin_6 169 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00476 477 MobiDBLite consensus disorder prediction 455 477 - -
Cla03g00476 477 MobiDBLite consensus disorder prediction 75 89 - -
Cla03g00476 477 Gene3D Transferase(Phosphotransferase) domain 1 245 443 - -
Cla03g00476 477 Pfam Protein tyrosine and serine/threonine kinase 173 385 IPR001245 GO:0004672|GO:0006468
Cla03g00476 477 MobiDBLite consensus disorder prediction 72 99 - -
Cla03g00476 477 ProSitePatterns Protein kinases ATP-binding region signature. 175 197 IPR017441 GO:0005524
Cla03g00476 477 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 40 465 - -
Cla03g00476 477 MobiDBLite consensus disorder prediction 457 471 - -
Cla03g00476 477 SUPERFAMILY Protein kinase-like (PK-like) 149 437 IPR011009 -
Cla03g00476 477 ProSiteProfiles Protein kinase domain profile. 169 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00476 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00476 Cla-Chr3:5303470 Cla01g01985 Cla-Chr1:34494682 1.73E-117 dispersed
Cla03g00475 Cla-Chr3:5298327 Cla03g00476 Cla-Chr3:5303470 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80417 PF07714 PK_Tyr_Ser-Thr 3.90E-43 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00476 - - cmo:103489179 535.798