Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00479 ATGAGTGAAACAATGTCACATATTCACTCGTGTTACACAGCAGAAATGGTTTGGTTAAGATTCAAGTGTTCTCCTTCCCTCTACTTAGGTTTCCTGATCATCTTCATCATACCCATTTGCCACCGCAACCTTATGGCAATCGCTCAGGAAGATCTGGGATGGACTTGCGATAATGGCGAAGGAAACTACACCACTAACAGCAGTTACAAAGCCAATCTGGACCATCTCCTCTCCACCTTAACCACCCATCAAATTGACTACGGCTTCTACAACTTCTCTTACGGCCATGACCACAAAGCTTATGCTATTGGGTTATGCAGAGGAGACGTTATGCCAGACTCTTGCCAAACCTGCCTCAACAACTCTATAGCCCTTCTCACCAAAAACTGTCCCACCCAAATTGAGGCTATTGTTTGGTACGAAGATTGTATGCTTCGTTACTCCGACCGCTCCTTGTTCGGCGTCATGGACCTTTCACCAACTCGCTTTGTCGTGCTACCGGGTAATGCTTCAGACCCTCGCTTCACTCAGTTGGCCACTGATTTGCTTCACAAACTCACCCCTGAAGCTGCATCCGGTGATTCTCGTCTTAAGTATGCCACTGGAAGAACCTCAGTCCCAAATTTCCCTGTCATTTATGGGGCTGTGCAATGCACTCCTGATTTGCCTTCCAATGATTGCACCGATTGCCTGCTTGCTGCCATTGCACAAAATCGAGATGTTTATCCTGAGATTGCAAGAGTTAGAATTATGAAACCCAGTTGTAGTATTAGGTTTGATATCAATCGCGTCTTTCAGGATCCGCCCGCTTCAACGCCGCCACCTCTTTCCTCAAATACAACTACTACTACTTCTTCCCCACAAGGAAACAGAGCTCGGAGACTTGTCTTCATTTTTGTGCCTATTATTGTGGTTGCTTTAGCTGCTCTGCTTCTAATCATCATCATCATCTTAAGGGCAAGAAATTCACTTAAAAATCGGCGTGAAGATGAAATTGCAAATGTAGAATCTTTGCAGTTCGACTTTGACACAATTAGAATCGCAACCGATGGATTCTCTGATGCGAACCAACTTGGGAGAGGCGGGTTTGGAGCTGTTTATAAGGGTCGACTTCCCGATGGACAAAATATAGCTGTGAAACGACTATTTCAAGGCTCAAGTCAAGGAGATGACGAATTTAAGAATGAAATCGTGTTGATGGCTAAGCTTCAACATCGGAATTTAGTTCAGCTCTTGGGTTTCTGCTTCGAACAAAATGAAAAGCTCCTCATTTATGAGTTTGTAGAGAATTCCAGTCTTGAGAAATTCCTCTTTAATCCTATTAAGCGTGAGGGTTTAGATTGGAAAACTCGATATAATATTATAGAAGGCATTGTTCGAGGCCTTATTTATCTCCATGAAGACTCTCAACTTAGAATTATTCACCGAGACCTCAAAGCCTCTAACATTTTATTAGATAAAGAGATGCATGCTAAAATATCTGATTTTGGAACTGCAAAACTATTTATGCATGATCAAACTCGAGGAGATACAAGAAAAATCATCGGTACTTATGGATATATGGCTCCAGAGTATGCATGGAATGGTCAATTTTCGGTTAAATCAGATGTATTTAGTTTTGGTGTTTTGGTTTTAGAGATTGTTACGGGACAAAAGAATAATCGAGCTCAAACCAACAAGGAGATTGTAGAAACCCTTGTCAACTATGCATGGAGAAACTGGCAAACTGGAAATGCACTAGATATCATTGATCCTTGTTTGAAAAGTGGTTCAAGAATTGAAATGGCTAGATGTATTCATGTGGGGTTGTTATGCGTTCAAGAAAATCCACTGGAGAGGCCAACAATGACTACTGTACTTCTCATGCTTAACAGTGGTTCTGTCACTCTCCCAAGGCCCTCTCAGCCAGCATTTTTCATCGATAGTGCTTGCTGTCAAATGTCTCGACAATTTGAAGATCACAGTTCAAGTACTCATGATCCAAATGACTTGTCAATTACTGAGTTATGTCCTCGTTAG 2019 42.0 MSETMSHIHSCYTAEMVWLRFKCSPSLYLGFLIIFIIPICHRNLMAIAQEDLGWTCDNGEGNYTTNSSYKANLDHLLSTLTTHQIDYGFYNFSYGHDHKAYAIGLCRGDVMPDSCQTCLNNSIALLTKNCPTQIEAIVWYEDCMLRYSDRSLFGVMDLSPTRFVVLPGNASDPRFTQLATDLLHKLTPEAASGDSRLKYATGRTSVPNFPVIYGAVQCTPDLPSNDCTDCLLAAIAQNRDVYPEIARVRIMKPSCSIRFDINRVFQDPPASTPPPLSSNTTTTTSSPQGNRARRLVFIFVPIIVVALAALLLIIIIILRARNSLKNRREDEIANVESLQFDFDTIRIATDGFSDANQLGRGGFGAVYKGRLPDGQNIAVKRLFQGSSQGDDEFKNEIVLMAKLQHRNLVQLLGFCFEQNEKLLIYEFVENSSLEKFLFNPIKREGLDWKTRYNIIEGIVRGLIYLHEDSQLRIIHRDLKASNILLDKEMHAKISDFGTAKLFMHDQTRGDTRKIIGTYGYMAPEYAWNGQFSVKSDVFSFGVLVLEIVTGQKNNRAQTNKEIVETLVNYAWRNWQTGNALDIIDPCLKSGSRIEMARCIHVGLLCVQENPLERPTMTTVLLMLNSGSVTLPRPSQPAFFIDSACCQMSRQFEDHSSSTHDPNDLSITELCPR 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5329503 5332267 + ClCG03G005080.2 Cla03g00479 268979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00479 672 MobiDBLite consensus disorder prediction 268 288 - -
Cla03g00479 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Cla03g00479 672 ProSiteProfiles Gnk2-homologous domain profile. 157 264 IPR002902 -
Cla03g00479 672 ProSiteProfiles Protein kinase domain profile. 352 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00479 672 CDD STKc_IRAK 358 624 - -
Cla03g00479 672 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Cla03g00479 672 SMART serkin_6 352 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00479 672 MobiDBLite consensus disorder prediction 652 672 - -
Cla03g00479 672 Gene3D Transferase(Phosphotransferase) domain 1 428 630 - -
Cla03g00479 672 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 39 655 - -
Cla03g00479 672 Pfam Salt stress response/antifungal 56 149 IPR002902 -
Cla03g00479 672 Pfam Salt stress response/antifungal 172 260 IPR002902 -
Cla03g00479 672 Pfam Protein tyrosine and serine/threonine kinase 356 568 IPR001245 GO:0004672|GO:0006468
Cla03g00479 672 Gene3D - 168 263 IPR038408 -
Cla03g00479 672 Gene3D - 52 152 IPR038408 -
Cla03g00479 672 Gene3D Phosphorylase Kinase; domain 1 316 427 - -
Cla03g00479 672 ProSiteProfiles Gnk2-homologous domain profile. 51 152 IPR002902 -
Cla03g00479 672 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 39 655 - -
Cla03g00479 672 SUPERFAMILY Protein kinase-like (PK-like) 337 651 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02181 Cla03g00479 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01985 Cla-Chr1:34494682 Cla03g00479 Cla-Chr3:5329503 0 dispersed
Cla01g02174 Cla-Chr1:35825456 Cla03g00479 Cla-Chr3:5329503 5.44E-149 dispersed
Cla01g02179 Cla-Chr1:35848297 Cla03g00479 Cla-Chr3:5329503 1.62E-12 dispersed
Cla03g00475 Cla-Chr3:5298327 Cla03g00479 Cla-Chr3:5329503 0 dispersed
Cla03g00479 Cla-Chr3:5329503 Cla05g01568 Cla-Chr5:26537136 2.19E-120 dispersed
Cla03g00481 Cla-Chr3:5343585 Cla03g00479 Cla-Chr3:5329503 4.88E-23 dispersed
Cla03g00477 Cla-Chr3:5306142 Cla03g00479 Cla-Chr3:5329503 2.47E-18 proximal
Cla03g00479 Cla-Chr3:5329503 Cla03g00480 Cla-Chr3:5338000 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80418 PF07714 PK_Tyr_Ser-Thr 9.80E-48 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00479 - - csv:101218966 1019.22