Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00479 | ATGAGTGAAACAATGTCACATATTCACTCGTGTTACACAGCAGAAATGGTTTGGTTAAGATTCAAGTGTTCTCCTTCCCTCTACTTAGGTTTCCTGATCATCTTCATCATACCCATTTGCCACCGCAACCTTATGGCAATCGCTCAGGAAGATCTGGGATGGACTTGCGATAATGGCGAAGGAAACTACACCACTAACAGCAGTTACAAAGCCAATCTGGACCATCTCCTCTCCACCTTAACCACCCATCAAATTGACTACGGCTTCTACAACTTCTCTTACGGCCATGACCACAAAGCTTATGCTATTGGGTTATGCAGAGGAGACGTTATGCCAGACTCTTGCCAAACCTGCCTCAACAACTCTATAGCCCTTCTCACCAAAAACTGTCCCACCCAAATTGAGGCTATTGTTTGGTACGAAGATTGTATGCTTCGTTACTCCGACCGCTCCTTGTTCGGCGTCATGGACCTTTCACCAACTCGCTTTGTCGTGCTACCGGGTAATGCTTCAGACCCTCGCTTCACTCAGTTGGCCACTGATTTGCTTCACAAACTCACCCCTGAAGCTGCATCCGGTGATTCTCGTCTTAAGTATGCCACTGGAAGAACCTCAGTCCCAAATTTCCCTGTCATTTATGGGGCTGTGCAATGCACTCCTGATTTGCCTTCCAATGATTGCACCGATTGCCTGCTTGCTGCCATTGCACAAAATCGAGATGTTTATCCTGAGATTGCAAGAGTTAGAATTATGAAACCCAGTTGTAGTATTAGGTTTGATATCAATCGCGTCTTTCAGGATCCGCCCGCTTCAACGCCGCCACCTCTTTCCTCAAATACAACTACTACTACTTCTTCCCCACAAGGAAACAGAGCTCGGAGACTTGTCTTCATTTTTGTGCCTATTATTGTGGTTGCTTTAGCTGCTCTGCTTCTAATCATCATCATCATCTTAAGGGCAAGAAATTCACTTAAAAATCGGCGTGAAGATGAAATTGCAAATGTAGAATCTTTGCAGTTCGACTTTGACACAATTAGAATCGCAACCGATGGATTCTCTGATGCGAACCAACTTGGGAGAGGCGGGTTTGGAGCTGTTTATAAGGGTCGACTTCCCGATGGACAAAATATAGCTGTGAAACGACTATTTCAAGGCTCAAGTCAAGGAGATGACGAATTTAAGAATGAAATCGTGTTGATGGCTAAGCTTCAACATCGGAATTTAGTTCAGCTCTTGGGTTTCTGCTTCGAACAAAATGAAAAGCTCCTCATTTATGAGTTTGTAGAGAATTCCAGTCTTGAGAAATTCCTCTTTAATCCTATTAAGCGTGAGGGTTTAGATTGGAAAACTCGATATAATATTATAGAAGGCATTGTTCGAGGCCTTATTTATCTCCATGAAGACTCTCAACTTAGAATTATTCACCGAGACCTCAAAGCCTCTAACATTTTATTAGATAAAGAGATGCATGCTAAAATATCTGATTTTGGAACTGCAAAACTATTTATGCATGATCAAACTCGAGGAGATACAAGAAAAATCATCGGTACTTATGGATATATGGCTCCAGAGTATGCATGGAATGGTCAATTTTCGGTTAAATCAGATGTATTTAGTTTTGGTGTTTTGGTTTTAGAGATTGTTACGGGACAAAAGAATAATCGAGCTCAAACCAACAAGGAGATTGTAGAAACCCTTGTCAACTATGCATGGAGAAACTGGCAAACTGGAAATGCACTAGATATCATTGATCCTTGTTTGAAAAGTGGTTCAAGAATTGAAATGGCTAGATGTATTCATGTGGGGTTGTTATGCGTTCAAGAAAATCCACTGGAGAGGCCAACAATGACTACTGTACTTCTCATGCTTAACAGTGGTTCTGTCACTCTCCCAAGGCCCTCTCAGCCAGCATTTTTCATCGATAGTGCTTGCTGTCAAATGTCTCGACAATTTGAAGATCACAGTTCAAGTACTCATGATCCAAATGACTTGTCAATTACTGAGTTATGTCCTCGTTAG | 2019 | 42.0 | MSETMSHIHSCYTAEMVWLRFKCSPSLYLGFLIIFIIPICHRNLMAIAQEDLGWTCDNGEGNYTTNSSYKANLDHLLSTLTTHQIDYGFYNFSYGHDHKAYAIGLCRGDVMPDSCQTCLNNSIALLTKNCPTQIEAIVWYEDCMLRYSDRSLFGVMDLSPTRFVVLPGNASDPRFTQLATDLLHKLTPEAASGDSRLKYATGRTSVPNFPVIYGAVQCTPDLPSNDCTDCLLAAIAQNRDVYPEIARVRIMKPSCSIRFDINRVFQDPPASTPPPLSSNTTTTTSSPQGNRARRLVFIFVPIIVVALAALLLIIIIILRARNSLKNRREDEIANVESLQFDFDTIRIATDGFSDANQLGRGGFGAVYKGRLPDGQNIAVKRLFQGSSQGDDEFKNEIVLMAKLQHRNLVQLLGFCFEQNEKLLIYEFVENSSLEKFLFNPIKREGLDWKTRYNIIEGIVRGLIYLHEDSQLRIIHRDLKASNILLDKEMHAKISDFGTAKLFMHDQTRGDTRKIIGTYGYMAPEYAWNGQFSVKSDVFSFGVLVLEIVTGQKNNRAQTNKEIVETLVNYAWRNWQTGNALDIIDPCLKSGSRIEMARCIHVGLLCVQENPLERPTMTTVLLMLNSGSVTLPRPSQPAFFIDSACCQMSRQFEDHSSSTHDPNDLSITELCPR | 672 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5329503 | 5332267 | + | ClCG03G005080.2 | Cla03g00479 | 268979 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00479 | 672 | MobiDBLite | consensus disorder prediction | 268 | 288 | - | - | |
Cla03g00479 | 672 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 473 | 485 | IPR008271 | GO:0004672|GO:0006468 | |
Cla03g00479 | 672 | ProSiteProfiles | Gnk2-homologous domain profile. | 157 | 264 | IPR002902 | - | |
Cla03g00479 | 672 | ProSiteProfiles | Protein kinase domain profile. | 352 | 638 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla03g00479 | 672 | CDD | STKc_IRAK | 358 | 624 | - | - | |
Cla03g00479 | 672 | ProSitePatterns | Protein kinases ATP-binding region signature. | 358 | 380 | IPR017441 | GO:0005524 | |
Cla03g00479 | 672 | SMART | serkin_6 | 352 | 604 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla03g00479 | 672 | MobiDBLite | consensus disorder prediction | 652 | 672 | - | - | |
Cla03g00479 | 672 | Gene3D | Transferase(Phosphotransferase) domain 1 | 428 | 630 | - | - | |
Cla03g00479 | 672 | PANTHER | CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN | 39 | 655 | - | - | |
Cla03g00479 | 672 | Pfam | Salt stress response/antifungal | 56 | 149 | IPR002902 | - | |
Cla03g00479 | 672 | Pfam | Salt stress response/antifungal | 172 | 260 | IPR002902 | - | |
Cla03g00479 | 672 | Pfam | Protein tyrosine and serine/threonine kinase | 356 | 568 | IPR001245 | GO:0004672|GO:0006468 | |
Cla03g00479 | 672 | Gene3D | - | 168 | 263 | IPR038408 | - | |
Cla03g00479 | 672 | Gene3D | - | 52 | 152 | IPR038408 | - | |
Cla03g00479 | 672 | Gene3D | Phosphorylase Kinase; domain 1 | 316 | 427 | - | - | |
Cla03g00479 | 672 | ProSiteProfiles | Gnk2-homologous domain profile. | 51 | 152 | IPR002902 | - | |
Cla03g00479 | 672 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 39 | 655 | - | - | |
Cla03g00479 | 672 | SUPERFAMILY | Protein kinase-like (PK-like) | 337 | 651 | IPR011009 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g02181 | Cla03g00479 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01985 | Cla-Chr1:34494682 | Cla03g00479 | Cla-Chr3:5329503 | 0 | dispersed | |
Cla01g02174 | Cla-Chr1:35825456 | Cla03g00479 | Cla-Chr3:5329503 | 5.44E-149 | dispersed | |
Cla01g02179 | Cla-Chr1:35848297 | Cla03g00479 | Cla-Chr3:5329503 | 1.62E-12 | dispersed | |
Cla03g00475 | Cla-Chr3:5298327 | Cla03g00479 | Cla-Chr3:5329503 | 0 | dispersed | |
Cla03g00479 | Cla-Chr3:5329503 | Cla05g01568 | Cla-Chr5:26537136 | 2.19E-120 | dispersed | |
Cla03g00481 | Cla-Chr3:5343585 | Cla03g00479 | Cla-Chr3:5329503 | 4.88E-23 | dispersed | |
Cla03g00477 | Cla-Chr3:5306142 | Cla03g00479 | Cla-Chr3:5329503 | 2.47E-18 | proximal | |
Cla03g00479 | Cla-Chr3:5329503 | Cla03g00480 | Cla-Chr3:5338000 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80418 | PF07714 | PK_Tyr_Ser-Thr | 9.80E-48 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00479 | - | - | csv:101218966 | 1019.22 |