Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00480 ATGGCGTGGCCTCACAATTTGAAGAATTTGTGGAGCAACAAAACAATGGCTGATTCAAAATTTGTTTGTTCCATTACTCTGAGTTTGTTGCTGTTGGCAGTGATTGATCATCCTCTGGCATTTGCTCAGCCCAGATTCTCGCACTATACATGCGTGGACGGCGGCAATAACAACCGCACAACTGACGGCGGCGCCGCCTACAAAGCCAATCTGAACCACCTCCTCTCCACCCTCACCACTGACCATCAAATTGACTATGGCTTCTACAACTTCTCTTACGGCGCCGGCGAAAACAGCGCAAAAGTAATCGGACTCTGCAGAGGGGACATTTCGGCGGAGACTTGCCGGAAATGCCTCAACGACTCCAGAGATCTTCTCCCTGTGCGGTGTCCGACCCAAAGGGAGGCAATTGGTTGGTACCGAAACTGCATGCTCCGTTACTCCGACCGCCCCATCTTCGGCTCCATTGAACTTTCACCGTCTATTCCTCTGCCGTATCCGTTCAATGCGTCTGAACCGGAACGGTTCACCCAGGCCGCTAAGAAGCTGATTGTGAGTCTCATAGACCTGGCCTCCGCCGGCGATTCCCGTGTGAAATTTTCGACTGGGAACGATTCTCTTCCAGATTTGCCCACAATTTATGCTTTTGCTCAATGCACCCCGGATTTGTCCCGGCGGCAATGCAACGAGTGCTTGGTTGGGGCTCTGGCAATTATCCCAGAATGCTGTGATGGAAATCTTGGGGGCAGAGTTCTTACTCCCAGTTGCCATTTCGGATATGGGACTTACTCTCTCATTCAATCGCCCCCGTCGCCGCCGTCTCCATCGCCTTTCCCTGCTCCTCCTTTTCTTAGCAGAACAACTCACCGTGGAAATAAAAGTAACCACTCTAGAACTTTCATAGCTGTGATTGTGCCAATTGCTGTTGTTGTAGTCATACTACTGACGATCACCATCTACATGGGTCTGAGAAAAAGTAGTCCAAAGATCGATGAAGAAGAATCGACAGGTCGAACAGAGGAAGAAATGACGACGATGGGGTTTTTGCAGTTCGATTTCGACACCATTAGAAAAGCAACAGATGAATTTTCAGATGAAAATAAAGTTGGGGCAGGTGGATTTGGAGCTGTTTTCAAGGGGAAGCTTCCAAACGGACGAATCGTAGCGGTGAAACGACTGTCCCAAGCTTCAAGGCAGGGAGATGTAGAGTTCAAGAACGAACTCGTTTTGGTATCTAAGCTTCACCATCGGAATTTAGTTAAGCTTTTAGGTTTCTCCTTCAAAGAAAATGAAAAGTTTCTGATTTATGAGTTCTTGCACAACGGAAGCCTTCAAAATTTCATTTTCGATCCATTCAAGCGTCAAAGTTTAGATTGGGCAACACGCTACAAGATTATAGAAGGCATTACTCGAGGACTTGTTTATCTTCACGAAGACTCTCGAATCAAAGTTATTCATCGAAACCTAAACGCTAATAACATTTTATTAGATGCTGAGATGAATGCTAAAATTTCAGATTTTGGTATTGCAAGATTATTCGCATCTGAACAAACACAGGGTGATACATCTACCATAATTGGAACTTTTGGATATATGGCTCCCGAATATGTAAAGTACGGGCATCTCTCATCAAAGTCAGACGTCTTTAGCTTTGGTGTTTTAGTTTTAGAGATTGTGACGGGACAAAGAAATAACCTAATTCGTAGCAACATTGACAACATAGAAGACCCTCTTATAAGCCATGCATGGAGAAATTGGAGGGAGGGAAGAGCATTGAATATCGTAGATCCTTCTATTGAAATTGAAAGGGAGATAAGAAATGAAGTGAGAAGATGCATTCATATCGGATTACTATGCATTCAAGAAAAGGTTGATGAAAGGCCAAAGATGAGTACTGTCCTTCTCATGCTCAATGGTGATTTGACTGAAATTCCAAAACCCTCTCAGCCTTCTTTCTTTATGAATGTTAGAACCCAACACAATTGTTCTTAG 1992 44.63 MAWPHNLKNLWSNKTMADSKFVCSITLSLLLLAVIDHPLAFAQPRFSHYTCVDGGNNNRTTDGGAAYKANLNHLLSTLTTDHQIDYGFYNFSYGAGENSAKVIGLCRGDISAETCRKCLNDSRDLLPVRCPTQREAIGWYRNCMLRYSDRPIFGSIELSPSIPLPYPFNASEPERFTQAAKKLIVSLIDLASAGDSRVKFSTGNDSLPDLPTIYAFAQCTPDLSRRQCNECLVGALAIIPECCDGNLGGRVLTPSCHFGYGTYSLIQSPPSPPSPSPFPAPPFLSRTTHRGNKSNHSRTFIAVIVPIAVVVVILLTITIYMGLRKSSPKIDEEESTGRTEEEMTTMGFLQFDFDTIRKATDEFSDENKVGAGGFGAVFKGKLPNGRIVAVKRLSQASRQGDVEFKNELVLVSKLHHRNLVKLLGFSFKENEKFLIYEFLHNGSLQNFIFDPFKRQSLDWATRYKIIEGITRGLVYLHEDSRIKVIHRNLNANNILLDAEMNAKISDFGIARLFASEQTQGDTSTIIGTFGYMAPEYVKYGHLSSKSDVFSFGVLVLEIVTGQRNNLIRSNIDNIEDPLISHAWRNWREGRALNIVDPSIEIEREIRNEVRRCIHIGLLCIQEKVDERPKMSTVLLMLNGDLTEIPKPSQPSFFMNVRTQHNCS 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5338000 5340540 + ClCG03G005090.2 Cla03g00480 268980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00480 663 Pfam Protein tyrosine and serine/threonine kinase 366 634 IPR001245 GO:0004672|GO:0006468
Cla03g00480 663 MobiDBLite consensus disorder prediction 268 293 - -
Cla03g00480 663 Gene3D Transferase(Phosphotransferase) domain 1 439 647 - -
Cla03g00480 663 ProSiteProfiles Gnk2-homologous domain profile. 49 152 IPR002902 -
Cla03g00480 663 SUPERFAMILY Protein kinase-like (PK-like) 342 637 IPR011009 -
Cla03g00480 663 ProSiteProfiles Gnk2-homologous domain profile. 158 265 IPR002902 -
Cla03g00480 663 CDD STKc_IRAK 369 639 - -
Cla03g00480 663 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Cla03g00480 663 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 60 659 - -
Cla03g00480 663 Gene3D - 167 264 IPR038408 -
Cla03g00480 663 Gene3D - 48 151 IPR038408 -
Cla03g00480 663 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 60 659 - -
Cla03g00480 663 MobiDBLite consensus disorder prediction 268 282 - -
Cla03g00480 663 Pfam Salt stress response/antifungal 171 263 IPR002902 -
Cla03g00480 663 Pfam Salt stress response/antifungal 58 149 IPR002902 -
Cla03g00480 663 ProSiteProfiles Protein kinase domain profile. 363 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00480 663 Gene3D Phosphorylase Kinase; domain 1 325 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02180 Cla-Chr1:35859856 Cla03g00480 Cla-Chr3:5338000 0 dispersed
Cla03g00480 Cla-Chr3:5338000 Cla05g01568 Cla-Chr5:26537136 2.92E-108 dispersed
Cla03g00479 Cla-Chr3:5329503 Cla03g00480 Cla-Chr3:5338000 0 tandem
Cla03g00480 Cla-Chr3:5338000 Cla03g00481 Cla-Chr3:5343585 5.12E-07 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80419 PF07714 PK_Tyr_Ser-Thr 1.70E-45 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00480 - - csv:101215640 979.933