Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00485 ATGTCAGCTTATTTGTGGAAAAGCTTCGACGAGGATGAAGATCGACCCGAGAAGCCGCGGCGATGTGGAGTTACAGAGATGAGAGGCCCTCATTATACTCTTTCGAGCCAAAATGTTATTCAGGAAATTTTCGAGTCTGTGGGTCAATTTGTCGATGGGTTAAAGTTCTCCGGGGGTTCTCACAGCCTATTGCCGAGGGATTTTATGAAAGAGGTGACGGAAATGGCTCATCGACATGACATCTATGTCAGTACGGGTGACTGGGCGGAGCATTTACTACGCAAAGGTCCATCTGGTTTCAAAGAGTATGTGGAGGAATGTAAGCTCTTAGGATTTGACACTGTTGAGCTCAACGTGGGATCACTTGAAGTTCCTGAAGAAACTCTTCTGAGATACGTGCGTTTGATTAAGAACGGTGGCCTTAGGGCTAAGCCTCAGTTCGCAGTGAAGTTCAACAAGTCCGACATTCCCATCAGTGGCAATCGAGCATTTGGAGCTTATATTGTTCCGAGACCACGATCTTCTGGTAAGGTTGCCATTTGCAGATCTGTTCTTTCTCAAGAAATGGAACTTGTAGAAGATGTTGATCTTTTGATCAGAAGGGCTGAGAGATGCCTAGAAGCTGGGGCAGACATGATTATGATTGATGCAGATGATGTCAGTAAACATGCCGATTCTCTTCGAGCAGATATTATTGCCAAGATCATTGGGCGTCTTGGTCTAGAGAAAACGATGTTTGAAGCATCGAATCCCAGAACATCAGAGTGGTTTATCAATCATTACGGTCCAAAGGTGAATCTTTTTGTGGATCACTCTCAAGTTATGGATCTGGAGTGCCTCCGGGGTCGCAACCTCGGTAAAAATCATTCATCTATTCTTGGTTCCTCCTACTTTCGGATGTAA 903 44.96 MSAYLWKSFDEDEDRPEKPRRCGVTEMRGPHYTLSSQNVIQEIFESVGQFVDGLKFSGGSHSLLPRDFMKEVTEMAHRHDIYVSTGDWAEHLLRKGPSGFKEYVEECKLLGFDTVELNVGSLEVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDIPISGNRAFGAYIVPRPRSSGKVAICRSVLSQEMELVEDVDLLIRRAERCLEAGADMIMIDADDVSKHADSLRADIIAKIIGRLGLEKTMFEASNPRTSEWFINHYGPKVNLFVDHSQVMDLECLRGRNLGKNHSSILGSSYFRM 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5368950 5371176 + ClCG03G005150.1 Cla03g00485 268985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00485 300 PANTHER PROTEIN HEAT-STRESS-ASSOCIATED 32 13 300 - -
Cla03g00485 300 Gene3D Aldolase class I 8 288 IPR013785 -
Cla03g00485 300 MobiDBLite consensus disorder prediction 1 20 - -
Cla03g00485 300 Pfam (2R)-phospho-3-sulfolactate synthase (ComA) 14 285 IPR003830 -
Cla03g00485 300 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 13 300 - -
Cla03g00485 300 SUPERFAMILY (2r)-phospho-3-sulfolactate synthase ComA 13 281 IPR036112 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00485 - - - csv:101208408 550.821
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla07g00628 . 17 766 Subtilisin-like Serine Gene Family AT1G01900 56.6 3.9e-232 801.6
Cla07g00626 . 22 795 Subtilisin-like Serine Gene Family AT1G01900 53.4 9.2e-226 780.4
Cla07g00130 . 31 772 Subtilisin-like Serine Gene Family AT1G04110 68.0 1.7e-312 1068.5
Cla05g01608 . 55 825 Subtilisin-like Serine Gene Family AT1G20150 52.5 1.4e-221 766.5
Cla05g01608 . 58 557 Subtilisin-like Serine Gene Family AT1G20160 61.5 7.9e-171 597.4
Cla08g01069 . 91 519 Subtilisin-like Serine Gene Family AT1G20160 50.9 3.7e-112 402.5
Cla10g00384 . 10 164 Subtilisin-like Serine Gene Family AT1G20160 55.7 1.7e-40 164.5
Cla01g02485 . 9 838 Subtilisin-like Serine Gene Family AT1G30600 65.2 1.5e-311 1065.4
Cla07g00778 . 121 840 Subtilisin-like Serine Gene Family AT1G32940 54.6 5.4e-228 787.7
Cla07g00778 . 121 840 Subtilisin-like Serine Gene Family AT1G32950 54.2 1.8e-223 772.7
Cla07g00778 . 97 840 Subtilisin-like Serine Gene Family AT1G32960 54.4 5.6e-231 797.7
Cla10g00384 . 7 159 Subtilisin-like Serine Gene Family AT1G32970 50.3 3.3e-39 160.6
Cla01g00962 . 54 791 Subtilisin-like Serine Gene Family AT1G62340 57.6 5.2e-243 837.8
Cla10g00384 . 7 159 Subtilisin-like Serine Gene Family AT1G66210 50.6 4.4e-39 160.2
Cla02g00312 . 38 751 Subtilisin-like Serine Gene Family AT2G04160 60.1 8.8e-261 896.7
Cla10g00388 . 14 770 Subtilisin-like Serine Gene Family AT2G04160 54.9 9.1e-242 833.6
Cla01g01132 . 32 702 Subtilisin-like Serine Gene Family AT2G04160 53.5 1.2e-206 716.8
Cla10g00384 . 4 164 Subtilisin-like Serine Gene Family AT2G04160 64.8 8.2e-57 219.2
Cla01g01131 . 51 178 Subtilisin-like Serine Gene Family AT2G04160 57.0 1.2e-36 152.1
Cla03g01443 . 21 761 Subtilisin-like Serine Gene Family AT2G05920 73.6 0.0e+00 1102.8
Cla01g01692 . 22 761 Subtilisin-like Serine Gene Family AT2G05920 55.6 3.8e-232 801.6
Cla08g01611 . 83 818 Subtilisin-like Serine Gene Family AT2G05920 55.9 3.5e-222 768.5
Cla05g00825 . 27 772 Subtilisin-like Serine Gene Family AT2G05920 51.9 3.2e-215 745.3
Cla09g00096 . 30 760 Subtilisin-like Serine Gene Family AT2G05920 53.6 1.2e-214 743.4
Cla02g01160 . 31 764 Subtilisin-like Serine Gene Family AT2G05920 51.5 1.9e-207 719.5
Cla09g00121 . 28 781 Subtilisin-like Serine Gene Family AT2G05920 51.3 4.1e-202 701.8
Cla11g01151 . 7 871 Subtilisin-like Serine Gene Family AT2G19170 76.4 0.0e+00 1315.8
Cla09g00096 . 8 767 Subtilisin-like Serine Gene Family AT3G14067 63.9 5.3e-282 967.2
Cla01g01692 . 9 761 Subtilisin-like Serine Gene Family AT3G14067 54.1 6.0e-225 777.7
Cla03g01443 . 20 758 Subtilisin-like Serine Gene Family AT3G14067 54.1 9.0e-221 763.8
Cla08g01611 . 54 818 Subtilisin-like Serine Gene Family AT3G14067 50.8 1.9e-210 729.6
Cla09g00121 . 9 787 Subtilisin-like Serine Gene Family AT3G14067 50.3 4.5e-204 708.4
Cla10g00384 . 12 161 Subtilisin-like Serine Gene Family AT3G14067 50.7 2.1e-36 151.4
Cla09g00121 . 31 789 Subtilisin-like Serine Gene Family AT3G14240 77.0 0.0e+00 1207.2
Cla02g01160 . 32 772 Subtilisin-like Serine Gene Family AT3G14240 58.8 8.0e-246 847.0
Cla01g01692 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 52.5 7.8e-217 750.7
Cla09g00096 . 29 758 Subtilisin-like Serine Gene Family AT3G14240 51.7 3.4e-212 735.3
Cla05g00825 . 28 768 Subtilisin-like Serine Gene Family AT3G14240 50.1 1.1e-210 730.3
Cla03g01443 . 24 754 Subtilisin-like Serine Gene Family AT3G14240 51.1 7.1e-210 727.6
Cla08g01611 . 85 817 Subtilisin-like Serine Gene Family AT3G14240 50.5 3.2e-202 702.2
Cla10g00384 . 2 163 Subtilisin-like Serine Gene Family AT3G14240 51.8 2.0e-39 161.4
Cla10g00384 . 12 166 Subtilisin-like Serine Gene Family AT3G46840 52.6 3.3e-39 160.6
Cla07g00629 . 9 568 Subtilisin-like Serine Gene Family AT4G00230 58.4 5.9e-188 654.4
Cla07g00632 . 12 519 Subtilisin-like Serine Gene Family AT4G00230 54.9 3.7e-166 582.0
Cla10g00384 . 15 161 Subtilisin-like Serine Gene Family AT4G00230 55.1 5.7e-42 169.5
Cla07g00778 . 121 838 Subtilisin-like Serine Gene Family AT4G10510 53.2 2.0e-222 769.2
Cla07g00778 . 98 838 Subtilisin-like Serine Gene Family AT4G10520 54.9 2.1e-230 795.8
Cla07g00778 . 98 838 Subtilisin-like Serine Gene Family AT4G10530 52.6 8.9e-218 753.8
Cla07g00778 . 76 840 Subtilisin-like Serine Gene Family AT4G10540 53.5 4.9e-235 811.2
Cla07g00778 . 121 840 Subtilisin-like Serine Gene Family AT4G10550 53.4 2.6e-222 768.8
Cla01g02485 . 12 838 Subtilisin-like Serine Gene Family AT4G20430 68.2 0.0e+00 1138.3
Cla03g00485 . 1 298 Subtilisin-like Serine Gene Family AT4G21320 74.6 1.0e-129 459.9
Cla07g00778 . 93 837 Subtilisin-like Serine Gene Family AT4G21650 50.4 5.2e-205 711.4
Cla01g01234 . 1 722 Subtilisin-like Serine Gene Family AT4G26330 56.2 1.1e-233 806.6
Cla11g01151 . 10 871 Subtilisin-like Serine Gene Family AT4G30020 76.4 0.0e+00 1310.4
Cla02g01160 . 15 772 Subtilisin-like Serine Gene Family AT4G34980 74.5 0.0e+00 1151.7
Cla09g00121 . 16 789 Subtilisin-like Serine Gene Family AT4G34980 53.1 6.1e-230 794.3
Cla01g01692 . 1 757 Subtilisin-like Serine Gene Family AT4G34980 51.2 8.3e-211 730.7
Cla05g00825 . 9 771 Subtilisin-like Serine Gene Family AT4G34980 50.8 1.8e-210 729.6
Cla03g01443 . 1 754 Subtilisin-like Serine Gene Family AT4G34980 50.4 3.8e-208 721.8
Cla10g00387 . 65 307 Subtilisin-like Serine Gene Family AT4G34980 52.0 7.5e-63 239.2
Cla04g00975 . 4 564 Subtilisin-like Serine Gene Family AT5G03620 58.5 4.5e-185 644.8
Cla07g00629 . 5 566 Subtilisin-like Serine Gene Family AT5G03620 51.5 1.9e-146 516.5
Cla10g01818 . 16 276 Subtilisin-like Serine Gene Family AT5G03620 55.0 2.5e-82 303.5
Cla10g00384 . 11 159 Subtilisin-like Serine Gene Family AT5G03620 55.0 6.6e-43 172.6
Cla10g01819 . 49 157 Subtilisin-like Serine Gene Family AT5G03620 70.8 1.3e-38 158.3
Cla06g00853 . 291 1050 Subtilisin-like Serine Gene Family AT5G19660 79.8 0.0e+00 1271.1
Cla01g02485 . 34 612 Subtilisin-like Serine Gene Family AT5G44530 70.8 7.9e-244 840.1
Cla01g02353 . 23 834 Subtilisin-like Serine Gene Family AT5G45650 54.9 3.2e-242 835.1
Cla05g00825 . 27 770 Subtilisin-like Serine Gene Family AT5G51750 73.8 0.0e+00 1156.7
Cla01g01692 . 13 761 Subtilisin-like Serine Gene Family AT5G51750 52.0 8.1e-230 793.9
Cla08g01611 . 61 818 Subtilisin-like Serine Gene Family AT5G51750 52.1 3.9e-224 775.0
Cla03g01443 . 19 758 Subtilisin-like Serine Gene Family AT5G51750 51.4 4.5e-220 761.5
Cla10g00384 . 14 161 Subtilisin-like Serine Gene Family AT5G58830 53.0 3.3e-36 150.6
Cla10g00384 . 14 161 Subtilisin-like Serine Gene Family AT5G58840 51.7 3.9e-37 153.3
Cla10g00384 . 14 161 Subtilisin-like Serine Gene Family AT5G59090 51.0 2.6e-36 151.0
Cla05g02221 . 50 747 Subtilisin-like Serine Gene Family AT5G59190 50.2 1.4e-188 656.8
Cla01g00097 . 404 1101 Subtilisin-like Serine Gene Family AT5G59190 50.1 4.9e-186 648.3
Cla10g01818 . 32 276 Subtilisin-like Serine Gene Family AT5G59190 50.2 2.8e-56 217.2
Cla10g00384 . 11 161 Subtilisin-like Serine Gene Family AT5G59190 53.3 8.4e-37 152.5
Cla02g00312 . 45 751 Subtilisin-like Serine Gene Family AT5G59810 55.8 4.4e-236 814.7
Cla10g00388 . 11 770 Subtilisin-like Serine Gene Family AT5G59810 54.6 2.9e-235 812.0
Cla01g01132 . 33 703 Subtilisin-like Serine Gene Family AT5G59810 59.5 9.6e-231 797.0
Cla10g00384 . 5 164 Subtilisin-like Serine Gene Family AT5G59810 64.0 3.5e-55 213.8
Cla01g01131 . 52 185 Subtilisin-like Serine Gene Family AT5G59810 57.4 1.2e-39 162.2
Cla01g01692 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 72.1 0.0e+00 1102.4
Cla08g01611 . 59 819 Subtilisin-like Serine Gene Family AT5G67360 64.9 1.4e-290 995.7
Cla03g01443 . 24 759 Subtilisin-like Serine Gene Family AT5G67360 56.3 2.9e-232 802.0
Cla09g00096 . 8 759 Subtilisin-like Serine Gene Family AT5G67360 56.1 3.0e-229 792.0
Cla05g00825 . 11 769 Subtilisin-like Serine Gene Family AT5G67360 53.6 9.6e-228 786.9
Cla09g00121 . 9 784 Subtilisin-like Serine Gene Family AT5G67360 51.6 1.4e-210 729.9
Cla02g01160 . 13 767 Subtilisin-like Serine Gene Family AT5G67360 51.4 9.1e-210 727.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011865 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 2 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00485 Cla_Chr03 FPKM 37.22295 43.691891 61.272041 62.231339 25.815805 28.566528 20.969606 80.654457 80.733841 77.386284