Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00496 ATGATAATGAAATGCTGTATGAATCTTCTTCCTCCTAAACGGGCTTTCTTCTTCATTTCGTTGTTTTTGGTAATTTTTGTTGGTAGCCAATTTAGCGTTGGCCTTGAGAATTCGAATTCTACCATTCAAATCATCAAAGATGGAGATCGGTTGACATCCAGCGACAATAATTTCGTTCTTGGATTCTTCGGTTTCAACAATTCCACCACTCGCCGATATGTCGGAATTTGGTATAATAAAATTCCTCAATTTACCCTCGTTTGGGTTGCAAATAGAAACCAACCCCTTAACGACAACACAGGAACCTTAGCCCTCGACCGCCGTGGAAACCTCCTCCTTTTCACCTCCAAACAAACCATATCTCTTTGGTCTACAAACGCTACCATTCAATCAAACGACGACGTGTTGATTAAGCTTTGGAATACGGGAAATCTCGCCCTGATTGAACGACAAAGCCAAAAGGTTATATGGCAAAGCTTTGACTATCCATCTCATGTCTTTCTTCCCTACATGAAATTGGGGTTGAACTGGCGGACCGGGATTAACTGGTTCCTAACTTCATGGAAGGCGCAGGACGATCCGAGAACTGGGAACTTCAGTTGTCGGATAGACCCAACAGGGTATCCGCAATTAATTTTGTACAAGGGGAATGATCCGCGGTGGCGGATTGGATCATGGACGGGGCACAAATGGTCTGGAGTACCTGAAATGACAAGGTCATTTATATTCAACACAACCTATATCGACAACACAGAGGAGATTTCCATAATGGACAGTGTCACAAACGACACGGTTTTAAGCAGCATGAGTCTAGACGAATCCGGTTTGTTGCATCGGTCCATGTGGAATGAAGAACAACAAAAGTGGAAAGATTATTGGACGGGTCCGACCGAGTGGTGCGACAGCTACAATAGATGCTATCCAAACACTAACTGTGACCAGTACGACACGGAGCAGTTCTATTGCAAGTGCTTGCCTGGCTTCGAACCACGATCGAACCAAAGTTGGTTACGGAGAGATCCGTCGGGTGGGTGCATCATGAAGAGGCCCAACGCCATGTGTCGTAGTGGAGAGGGATTTGTGAGGGTGTCACGTGTGAAGGTCCCGGATACGTCGATGGCACGTGCAGATTTGAGTATGAGTTTGGACGCGTGCGCACAAGCATGTGTAAATGATTGTAACTGTACGGCTTACACGAGCGCAAATGAGGCGACGGGGAGCGGGTGCGTGATGTGGTATGGAGATTTGATAGACACACGGACCTTTGCCAACACGGGTCAAGATCTATATGTAAGAGTTGATGCTATTGAATTAGCTCAATATAATCCACAAAATTCAAATCCTCATCCAACAAAGAAGGTGATAGTAATTGTTGTTGCATCTTTTGTTGCATTGGTGTTACTCGTGACCTCACTAATTTGTTTATGGAAAATGATTAGAAAAAGAAGGGAGAGATCCATGAGTCTATCTAATAACTTTGAGGTCTCTCCAAATTCAAATGAATTTGATGAAAGTAGAACAAATTCAGATTTGCCTATATTTGACTTGTTGACTATAGCAAAGGCAACCGATGATTTTTCATTTAATAACAAGCTTGGAAAAGGTGGCTTTGGCACAGTTTATAAGGGCAAGCTTATGAATGGAGAGGAAATTGCAGTTAAAAGGCTGGCTAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACATTAATTGCAAAGCTCCAACATAGAAACCTCGTCAGAATTTTAGGCTATTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTACCAAACAAAAGCTTGGACTATTTCATCTTTGATGAAAGCAAGAGGGCTTTGCTCAATTGGAAAAAACGTTTTGAAATTATATGTGGCATCGCACGAGGAATCTTATATCTTCATCAAGATTCAAGGTTGAAAATCATTCATCGAGATTTGAAGGCCAGCAATATACTACTGGATGCTGATTTGAATCCCAAAATCGCAGATTTTGGCATGGCAAGGATAGTTGGCCAAGATCAAATTCAAGCAAACACAAATCGCATCGTGGGAACATATGGTTATATGTCACCAGAGTATGCAATGGAAGGCCTATTTTCAGTAAAATCTGATGTTTATAGCTTTGGAGTTTTGGTGCTAGAGGTGATTACAGGCAAAAAGAACACTGGCTGTATATCCAACTACGTAAATTTGGTTGGACAAGTTTGGGAGCTCTGGAACTTGGACAATGCAATGGAATTAGTGGACTCAAGTTTGGAAGAAGGATCAAGTTGTGAATACGAAATCATGAGATGCCTCCAAATTGGGCTATTGTGTGTTCAAGAGGATCCGACTAACCGTCCGACCATGTCGAATGTGGTTTTCATGTTGGAGAATGAAGTGAGTATTCCTTCTCCAAAGAAACCTGCTTTCATTTTAAAGAGGAAAAGCAACCATGGAGATCCATCCACCAGTACTGAAGGAGCCAACTACAGTACTACTGAGGGAGCCAACTCTCTAAATGATCTAACAATTTCCATAATCGATGCTCGTTAA 2553 42.07 MIMKCCMNLLPPKRAFFFISLFLVIFVGSQFSVGLENSNSTIQIIKDGDRLTSSDNNFVLGFFGFNNSTTRRYVGIWYNKIPQFTLVWVANRNQPLNDNTGTLALDRRGNLLLFTSKQTISLWSTNATIQSNDDVLIKLWNTGNLALIERQSQKVIWQSFDYPSHVFLPYMKLGLNWRTGINWFLTSWKAQDDPRTGNFSCRIDPTGYPQLILYKGNDPRWRIGSWTGHKWSGVPEMTRSFIFNTTYIDNTEEISIMDSVTNDTVLSSMSLDESGLLHRSMWNEEQQKWKDYWTGPTEWCDSYNRCYPNTNCDQYDTEQFYCKCLPGFEPRSNQSWLRRDPSGGCIMKRPNAMCRSGEGFVRVSRVKVPDTSMARADLSMSLDACAQACVNDCNCTAYTSANEATGSGCVMWYGDLIDTRTFANTGQDLYVRVDAIELAQYNPQNSNPHPTKKVIVIVVASFVALVLLVTSLICLWKMIRKRRERSMSLSNNFEVSPNSNEFDESRTNSDLPIFDLLTIAKATDDFSFNNKLGKGGFGTVYKGKLMNGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDYFIFDESKRALLNWKKRFEIICGIARGILYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIVGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEVITGKKNTGCISNYVNLVGQVWELWNLDNAMELVDSSLEEGSSCEYEIMRCLQIGLLCVQEDPTNRPTMSNVVFMLENEVSIPSPKKPAFILKRKSNHGDPSTSTEGANYSTTEGANSLNDLTISIIDAR 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5524353 5529019 - ClCG03G005280.2 Cla03g00496 268996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00496 850 Pfam D-mannose binding lectin 85 189 IPR001480 -
Cla03g00496 850 CDD STKc_IRAK 532 798 - -
Cla03g00496 850 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 55 825 - -
Cla03g00496 850 Gene3D Phosphorylase Kinase; domain 1 500 601 - -
Cla03g00496 850 ProSiteProfiles Protein kinase domain profile. 526 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00496 850 CDD PAN_AP_plant 355 433 - -
Cla03g00496 850 ProSiteProfiles Bulb-type lectin domain profile. 36 160 IPR001480 -
Cla03g00496 850 SMART serkin_6 526 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00496 850 Pfam S-locus glycoprotein domain 221 331 IPR000858 GO:0048544
Cla03g00496 850 Gene3D Transferase(Phosphotransferase) domain 1 602 806 - -
Cla03g00496 850 CDD B_lectin 43 163 IPR001480 -
Cla03g00496 850 MobiDBLite consensus disorder prediction 813 834 - -
Cla03g00496 850 Pfam PAN-like domain 354 419 IPR003609 -
Cla03g00496 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Cla03g00496 850 SMART ntp_6 355 433 IPR003609 -
Cla03g00496 850 SMART blect_4 42 163 IPR001480 -
Cla03g00496 850 SUPERFAMILY Protein kinase-like (PK-like) 500 796 IPR011009 -
Cla03g00496 850 ProSiteProfiles PAN/Apple domain profile. 354 434 IPR003609 -
Cla03g00496 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 228 IPR036426 -
Cla03g00496 850 Gene3D - 36 160 IPR036426 -
Cla03g00496 850 MobiDBLite consensus disorder prediction 817 834 - -
Cla03g00496 850 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 55 825 - -
Cla03g00496 850 PIRSF SRK 7 850 IPR024171 GO:0004674
Cla03g00496 850 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524
Cla03g00496 850 Pfam Protein tyrosine and serine/threonine kinase 527 794 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02190 Cla-Chr1:35927636 Cla03g00496 Cla-Chr3:5524353 0 dispersed
Cla02g01105 Cla-Chr2:23537307 Cla03g00496 Cla-Chr3:5524353 2.86E-42 dispersed
Cla03g00496 Cla-Chr3:5524353 Cla05g01568 Cla-Chr5:26537136 0 dispersed
Cla10g01334 Cla-Chr10:28305246 Cla03g00496 Cla-Chr3:5524353 2.82E-90 dispersed
Cla03g00496 Cla-Chr3:5524353 Cla03g00497 Cla-Chr3:5538186 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80420 PF07714 PK_Tyr_Ser-Thr 9.00E-50 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00496 - - cmo:103485800 1397.88