Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00497 ATGAATCCTCTTCTTCCTAAAAGGGCCGTCTTCCTCATTTCGTTGTATTTGATATTTTTTGTGGGCAGCCATTTGAGCGTTGGCCTTGAGAATTCGAGTTCTACCATTCAAATCATTAAAGATGGAGATCGGTTGGTATCCAGCAACAAGAATTTCGCTCTTGGATTCTTCAGTTTCGACAATTCCACAACTCGCCGATATGTCGGAATTTGGTACAACAAAATTCCTCAACTAACCCTCGTTTGGGTTGCCAATAGAAACCAACCCCTCAACGACACCTCAGGAACCTTAGCCCTCGACCGTCATGGAAACGTCGTGGTTTTTACCCCAACACAAACTGTATCTCTTTGGTCTACGAACGCTTCCATCCAATCAAATAACGACGTGTCGATTGAGCTTTGGAATACGGGAAATCTCGCCCTGATTGAACGACGAAGCCATAAGGTTATATGGCAAAGCTTTGATTATCCATCTCATGTCCTTCTTCCCAACATGAAAATGGGAGTGAACCGGCGGACCGGGTTCAGCTGGTTCCTAACTTCATGGAAGGGGCAAGATGATCCGGGAACCGGGAACTTTAGTTGCCGGATTGACCCGACCGGGTATCCGCAACTGATTTTGTACGACGGGGATGCTCCACGGTGGCGGGGAGGATCGTGGACGGGGCGAAGATGGACCGGAGTACCTGAAATGACAAGGTCATTTATAATCAACACATCATATGTGGACAACAGTGAAGAGATTTCCTTAACAAACGGTGTAACGGTGGACACGGTTTTAATGAGAATGACTCTAGATGAATTCGGTTTGGTGCATCGGTCCACATGGAACGAAGAAGAGAAAAAGTGGATTGAATTTTGGTCAGCTCCAATCGAATGGTGTGACAGTTACAACCGGTGCGGTTTGAACAGCAACTGTGACCCATACAACGCAGATCAGTTCCAGTGCAAGTGCTTACCTGGGTTCGAACCACGGTCGAGCCAAAATTGGTTCTTAAGAGATCCGTCGGGTGGGTGCATCAGGAAGAGGTCGAACGCCACGTGTCGGAGTGGAGAGGGTTTTGTGAAAGTGTCACGTGTGAAGGTGCCAGATACATCGACGGCACGTGTGGATAAGAGTATGAGTTTAGAAGCGTGTGAACAAGCGTGTGTAAATGATTGTAATTGCACGGCTTACACAAGTGCAAATGAGACGACAGGAACCGGGTGCATGATGTGGTATGGAGATTTGGTTGACACGCGGACCTATGCCCACGTGGGTCAAGATCTTTATGTAAGGGTTGATGCTATTGAATTAGCTCAATACGCACAAAATTCAAATCGCCATCCAACGAAGAAGGTGATAGCAACTGTTATTGTGTCTTTTGTTGCCTTGGTGCTACTCGTGACCTCGCTAATTTATTTATGGGAAACAACTAGAAAAAGAAGGGACAGATCAACAAGCTTATCTCTTAACTTTGGAGAATTTCCAAATCTGAAGGAATTTGATGAAAGTAGAACAAGTTCAGATTTGCCTGTATTTGACTTGTTGACCATAGCAAAGGCAACAGACAATTTTTCAGTTATTAACAAGCTTGGAGAAGGTGGCTTTGGCGCAGTGTATAAGGGCAAACTTACAAATGGAGAGGAAATTGCTGTTAAAAGGTTGGCTAAGAATTCAGGGCAAGGCGTTGGAGAGTTCAAGAATGAAGTAAGTTTAATTGCAAAACTCCAACATAGAAACCTCGTCAGAATTTTAGGCTACTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTGCCAAACAAAAGCTTGGATTCTTTCATCTTTGATGAAAGCAAGAGGGCTTTGCTTGATTGGAAAAAACGTTTTGAAATCATATGTGGAATTGCACGGGGGATCTTATATCTTCATCAAGATTCTAGATTGAAAATTATTCATCGAGATTTGAAAGCGAGCAATATACTTCTGGATGCTGATTTGAACCCCAAAATAGCAGATTTTGGCATGGCAAGAATATTTGGCCAAGATCAAATTCAAGCAAACACAAATCGTATTGTGGGAACATACGGCTATATGTCACCAGAGTATGCAATGGAAGGCTTATTTTCAGTGAAATCGGATGTATATAGCTTTGGAGTTTTGATACTAGAGATGATTACAGGCAAAAAGAACACTAACTATGATTCCTCCCACTTGAACTTGGTTGGACATGTCTGGGAGCTCTGGAAATTGGACAATGTAATGGAATTAGTAGACTCAAGTTTGGAAGAATCAAGTTGTGGATATGAAATCATGAGATGCCTCCAAATTGGGCTATTGTGTGTCCAGGAGGATCCGACAGATCGTCCGACCATGTCCACTGTCATCTTCATGTTGGGGAATGAAGTAGGTCTTCCTTCTCCAAACAAGCCTGCTTTTATTTTAAAGAGAAAGTACAATAGTGGAGATCCATCTACTAGTACTGAAGGACCCAACTCTATAAATGATCTAACAATTTCTATAATCAATGCTCGTTAA 2505 42.87 MNPLLPKRAVFLISLYLIFFVGSHLSVGLENSSSTIQIIKDGDRLVSSNKNFALGFFSFDNSTTRRYVGIWYNKIPQLTLVWVANRNQPLNDTSGTLALDRHGNVVVFTPTQTVSLWSTNASIQSNNDVSIELWNTGNLALIERRSHKVIWQSFDYPSHVLLPNMKMGVNRRTGFSWFLTSWKGQDDPGTGNFSCRIDPTGYPQLILYDGDAPRWRGGSWTGRRWTGVPEMTRSFIINTSYVDNSEEISLTNGVTVDTVLMRMTLDEFGLVHRSTWNEEEKKWIEFWSAPIEWCDSYNRCGLNSNCDPYNADQFQCKCLPGFEPRSSQNWFLRDPSGGCIRKRSNATCRSGEGFVKVSRVKVPDTSTARVDKSMSLEACEQACVNDCNCTAYTSANETTGTGCMMWYGDLVDTRTYAHVGQDLYVRVDAIELAQYAQNSNRHPTKKVIATVIVSFVALVLLVTSLIYLWETTRKRRDRSTSLSLNFGEFPNLKEFDESRTSSDLPVFDLLTIAKATDNFSVINKLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVSLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDSFIFDESKRALLDWKKRFEIICGIARGILYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLILEMITGKKNTNYDSSHLNLVGHVWELWKLDNVMELVDSSLEESSCGYEIMRCLQIGLLCVQEDPTDRPTMSTVIFMLGNEVGLPSPNKPAFILKRKYNSGDPSTSTEGPNSINDLTISIINAR 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5538186 5542374 - ClCG03G005300.2 Cla03g00497 268997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00497 834 ProSiteProfiles EGF-like domain profile. 290 328 IPR000742 -
Cla03g00497 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Cla03g00497 834 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Cla03g00497 834 SMART blect_4 36 157 IPR001480 -
Cla03g00497 834 SMART ntp_6 349 427 IPR003609 -
Cla03g00497 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 188 IPR036426 -
Cla03g00497 834 Pfam D-mannose binding lectin 79 183 IPR001480 -
Cla03g00497 834 Pfam PAN-like domain 348 413 IPR003609 -
Cla03g00497 834 CDD PAN_AP_plant 347 427 - -
Cla03g00497 834 PANTHER - 14 831 - -
Cla03g00497 834 ProSiteProfiles Bulb-type lectin domain profile. 30 154 IPR001480 -
Cla03g00497 834 Gene3D Phosphorylase Kinase; domain 1 493 594 - -
Cla03g00497 834 Gene3D - 30 154 IPR036426 -
Cla03g00497 834 PIRSF SRK 2 834 IPR024171 GO:0004674
Cla03g00497 834 SMART serkin_6 519 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00497 834 CDD B_lectin 37 157 IPR001480 -
Cla03g00497 834 SUPERFAMILY Protein kinase-like (PK-like) 497 788 IPR011009 -
Cla03g00497 834 Gene3D Laminin 294 342 - -
Cla03g00497 834 Pfam Protein tyrosine and serine/threonine kinase 521 785 IPR001245 GO:0004672|GO:0006468
Cla03g00497 834 Gene3D Transferase(Phosphotransferase) domain 1 595 793 - -
Cla03g00497 834 ProSiteProfiles Protein kinase domain profile. 519 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00497 834 CDD STKc_IRAK 525 788 - -
Cla03g00497 834 ProSiteProfiles PAN/Apple domain profile. 348 428 IPR003609 -
Cla03g00497 834 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Cla03g00497 834 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 14 831 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00497 Cla-Chr3:5538186 Cla05g01568 Cla-Chr5:26537136 0 dispersed
Cla03g00496 Cla-Chr3:5524353 Cla03g00497 Cla-Chr3:5538186 0 tandem
Cla03g00497 Cla-Chr3:5538186 Cla03g00498 Cla-Chr3:5550542 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80421 PF07714 PK_Tyr_Ser-Thr 1.20E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00497 - - cmo:103485800 1494.18