Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00498 ATGGGAGAACGGATTTGCAGGTGCAAGCTTTCAACTCTTTTAATATTTTGGACGACCATAGCTCTGTTTCCAAGAAAATCATTAGCAATCGATAGTATAAAAGCAGGGGAATCCATTATTGGCAGTACCCAGATATTAGTTTCAACGGCACAGAACTTTGTGTTGGGAATCTTCAATCCCCAGGGCTCAAAATTTCAGTATTTGGGAATATGGTTCAACAACATCCCACAGACTGTCGTGTGGGTAGCAAACAGAGACAACCCACTTGTAACTTCCTCTGGAAAATTAACAGTCAACGGAGAAGGAAACATCATTCTTCTCAACGAAACAGGTGGAGTCTTATGGTCTTCTCCTTCTCCAGGATCAATGAAACAACCCGTCGCTCAGCTGCTAAACACAGGTAATTTGGTTTTAGGAGAATCTGGGTCTGAGAATTATTTATGGCAGAGTTTTGATTATCCTTCTGATACTCTGTTACCGGGAATGAAACTGGGTTGGGACTCGAAAACCGGTCTGAACCGGAAGTTAACATCTTGGAAAAGCTCGAACGATCCCTCGTCTGGGGCTTTCACTTACAGTATTGAAACGGATGGGCTTCCCCAATTTGTAATTCGCGAAGGACCCACCATAACTTTTCGAGGCGGCCCATGGTACGGTAATAGATTTAGTGGAAGTGGTGCACTCAGAGATACCGCAATTTATTCCCCAAAGTTCGATTATAACGCTACCGAAGCTTTCTTTTCATATGATGCTGCGGATAATCTCTCTGTAAGACTGGTATTGAACGCGGCTGGGTTTTTTCAACAGTTTTATTGGGTCGATGATGGAAAATATTGGAACCCTTTGTATATAATGCCAGGAGATCGCTGTGACGTCTATGGACTTTGTGGGGATTTTGGAGTTTGTACATTTTCGCTCACAGCAGAATGTGATTGTATGGCTGGGTTTGAACCCAAATCGCCTAACGATTGGGAAAGGTATAGATGGTCTGATGGTTGTGTTAGAAGGGACCATCGCACCTGTGGAAATGGAGAGGGGTTTAAAAGAATTAGCAGTGTGAAATTGCCAGATTCTTCAGGGAATTTGGTGAATGTTAATACAAGCATTGTTGATTGTGAGGCGGCGTGCTTAAACAACTGCTCTTGCCTGGCTTATGGAATAATGGAGCTTCCAACAGGCGGCTATGGCTGCGTTACCTGGTTTCATAAACTGGTGGATGTTAAATTCGTTCTTGAAAATGGACAAGATCTTTATGTGAGAGTGGCGGCTTCAGAACTTGGCTCGTCCAAGAAGAAGCTTTTGGTTGCAATATGTGTGTCTGTGGCTTCATTTTTAGGCTTCTTGGCCTTTGTCATTTGCTTGATCCTTGGGCGTAGAAGGAAAGTTAAAGGTAATGTGATCTCTCCTGATATCACTGAAGGTCATATTCAATCTCAAGAAAATGAAGTGGAAATGCCAATCTTTGATTTTACAACGATCGAGATTGCGACGAATGGTTTCTCTTTTTCGAACAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGAAAGCTTCCTTGTGGACAAGAGATTGCAGTAAAGAGACTGGCTGAGGGCTCTGGCCAAGGGCAAAGTGAGTTCAAAAATGAGGTTTTGTTGATCTCACAACTTCAGCATCGAAATCTTGTCAAGCTTCTTGGTTTCTGCATTCACCAACAAGAAACATTGCTGATCTATGAATATATGCAAAACAAAAGTTTAGACTATTTCCTATTCGATAATAAGAGGCGATCTTTACTGAATTGGCAAAAGAGATTGGACATCATAATTGGGATAGCTCGAGGACTTCTTTATCTTCATAGAGATTCAAGACTGAGAATAATACATAGGGACCTCAAAGTAAGTAATATATTACTAGACAATGAAATGACTCCAAAAATTTCAGACTTTGGTATGGCACGCATGTTTGGGGAAGATCAAAATATGACCAAAACCAAAAGAGTTGTTGGGACCTATGGTTATATGTCTCCAGAATATGCACTCGACGGATGTTTTTCATTGAAATCAGATGTGTTTAGCTTCGGGGTAATTCTTTTGGAAATAGTTAGCGGTAAGAAGAACAGAGGCTTCTTCCATACCAATCATCAACTAAATCTTCTCGGACATGCATGGAAGCTTTGGGATGAAGAAAATGCTTTGGAGTTAATGGATGCAGCTTTGGAGGATGAATTCCAACCTTCTCAAGCCCTGCGATGCATTGAAGTGGGGCTTTTGTGTGTTCAACAGAACCCTGATGAAAGGCCGACTATGTGGTCAGTACTTTCAATGTTGGAGAGTGAAAATGTATTGTTGTCTCATCCTAAACAACCTGGATTTTACATGGAAAGAATGTTTTCTAAGAATTTATCGGCCGAAACCTCCACTTCCAATGAAGTGACGGTTACATCGCTACACGGTCGTTAG 2445 41.68 MGERICRCKLSTLLIFWTTIALFPRKSLAIDSIKAGESIIGSTQILVSTAQNFVLGIFNPQGSKFQYLGIWFNNIPQTVVWVANRDNPLVTSSGKLTVNGEGNIILLNETGGVLWSSPSPGSMKQPVAQLLNTGNLVLGESGSENYLWQSFDYPSDTLLPGMKLGWDSKTGLNRKLTSWKSSNDPSSGAFTYSIETDGLPQFVIREGPTITFRGGPWYGNRFSGSGALRDTAIYSPKFDYNATEAFFSYDAADNLSVRLVLNAAGFFQQFYWVDDGKYWNPLYIMPGDRCDVYGLCGDFGVCTFSLTAECDCMAGFEPKSPNDWERYRWSDGCVRRDHRTCGNGEGFKRISSVKLPDSSGNLVNVNTSIVDCEAACLNNCSCLAYGIMELPTGGYGCVTWFHKLVDVKFVLENGQDLYVRVAASELGSSKKKLLVAICVSVASFLGFLAFVICLILGRRRKVKGNVISPDITEGHIQSQENEVEMPIFDFTTIEIATNGFSFSNKIGEGGFGPVYKGKLPCGQEIAVKRLAEGSGQGQSEFKNEVLLISQLQHRNLVKLLGFCIHQQETLLIYEYMQNKSLDYFLFDNKRRSLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMTPKISDFGMARMFGEDQNMTKTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTNHQLNLLGHAWKLWDEENALELMDAALEDEFQPSQALRCIEVGLLCVQQNPDERPTMWSVLSMLESENVLLSHPKQPGFYMERMFSKNLSAETSTSNEVTVTSLHGR 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5550542 5554167 - ClCG03G005310.2 Cla03g00498 268998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00498 814 CDD STKc_IRAK 506 772 - -
Cla03g00498 814 Gene3D Phosphorylase Kinase; domain 1 466 575 - -
Cla03g00498 814 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
Cla03g00498 814 SMART ntp_6 342 421 IPR003609 -
Cla03g00498 814 Pfam Domain of unknown function (DUF3403) 773 814 IPR021820 GO:0004674
Cla03g00498 814 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 23 810 - -
Cla03g00498 814 CDD B_lectin 39 154 IPR001480 -
Cla03g00498 814 Pfam Protein tyrosine and serine/threonine kinase 501 770 IPR001245 GO:0004672|GO:0006468
Cla03g00498 814 SUPERFAMILY Protein kinase-like (PK-like) 483 792 IPR011009 -
Cla03g00498 814 Pfam D-mannose binding lectin 78 180 IPR001480 -
Cla03g00498 814 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Cla03g00498 814 Gene3D - 27 151 IPR036426 -
Cla03g00498 814 SMART blect_4 37 154 IPR001480 -
Cla03g00498 814 Pfam PAN-like domain 341 407 IPR003609 -
Cla03g00498 814 CDD PAN_AP_plant 338 422 - -
Cla03g00498 814 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 810 - -
Cla03g00498 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Cla03g00498 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 185 IPR036426 -
Cla03g00498 814 ProSiteProfiles Protein kinase domain profile. 500 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00498 814 PIRSF SRK 3 814 IPR024171 GO:0004674
Cla03g00498 814 SMART serkin_6 500 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00498 814 Gene3D Transferase(Phosphotransferase) domain 1 576 782 - -
Cla03g00498 814 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00498 Cla-Chr3:5550542 Cla05g01568 Cla-Chr5:26537136 0 dispersed
Cla09g00231 Cla-Chr9:2360162 Cla03g00498 Cla-Chr3:5550542 8.75E-134 dispersed
Cla10g00596 Cla-Chr10:8789884 Cla03g00498 Cla-Chr3:5550542 4.71E-17 dispersed
Cla03g00497 Cla-Chr3:5538186 Cla03g00498 Cla-Chr3:5550542 0 tandem
Cla03g00498 Cla-Chr3:5550542 Cla03g00499 Cla-Chr3:5558184 2.80E-07 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80422 PF07714 PK_Tyr_Ser-Thr 1.70E-50 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00498 - - bhj:120084118 1531.54