Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00505 ATGAAACCCATCACCAACACCATTCCATTAATCCTTCTTCTCCTCTGCTTTGTTTTGAAATTTTCCAGCAGCATAGATACGATCACATCTACACAATTCCTCAAAGATCCCGAAGCTGTATTGTCCAATCGTGGCTTCTTCGAATTGGGTTTCTTCAGCCCTCCCAATTCCACCGATCGGTTCGTCGGAATTTGGGATAAACGAGTGCCTGTACGAACTGTTTTCTGGGTAGCTAACAGAGACGAGCCTCTCAACAACAAATCAGGGGTTTTCGCCGTATCCAACGACGGGAATCTCGTAGTATTAGATGAACACAATAAAATTCTTTGGAACTCCAATGTTTCTAACGCTGTAGTGAACTCCACCGCTCGTCTTCTTGATTCTGGAAACCTTGTTCTGCAGGACTCTGTTTCAGGGACCGTCATTTGGGAGAGTTTCAAAGACCCATCAGACAAATTCTTGCCAATGATGAAATTCATCACGAACTCAATCACAAACGAGAAAGTAGAAATCGTGTCGTGGAAAACCCCATCTGATCCATCTTCAGGAAATTTCTCCTTTGGAATCGACCCTCTGACGATCCCCGAAGTTATAATTTGGAAAAACAGCCGCCCGTATTGGAGGTCCGGTCCATGGGACGGCCAAGTTTTCATCGGAATACCCGGTATGAACACCGACTATCTTTCTGGAGGTAATCTCGTAATCGAAAACAAAACTTACTCTCTCTCAATTGCCAATGCAAACGAAGCTCAGTTATTCTACTACTACTTGAACCCAAATGGTAATTTGGAAGAGAATCGTTGGAATATTAAGGATCAAAAATACGAGATAGCTTGGTCAGCTCCTGAAACAGAGTGTGATGTTTATGGTGCTTGTGGAGCATTTGGGGTTTGTGATTCTCAAAGAACCCCAATTTGCAGTTGTTTGAGGGGTTTTAAGCCAGAGAAGGAAGAAGAATGGAACAGAGGAAATTGGAGAAATGGGTGTGTGAGGAATTCACCATTGGAGTGTGAAAAGAAGAACATCAATGTTGAAATAGGAAAACATGAGGATGGGTTTCTGAAAATGGGAATGGTTAAAGTTCCAGATTCTGCAGCTTGGATTTTAGCTTCGGAAAATGAGTGCAGAGTCCAGTGTTTGTCAAACTGTTCTTGTTCTGCATATGCATATAGAACAGGGATTGGTTGTATGATGTGGAGAAGAGATTTAATTGACATTCAACAGTTCAAGAATGATGGAGCAGACATTTATGTTCGTGTGGCATATTCAGAAATAGCTGATGAAAGTGGAATCACCAAAGACATGAAATTAGTCATCATAACTTCTGTGGTAACAGGAAGCTTCATACTTATCTGCTGCATATATTGCTTATGGAAAAGGAAAAGGCAGATCAAGTTTTTGATGAACACTGGTGGTGATATGAAGCATGATAAAGTGAATGAAGTTAAGCTTCAGGAGCTGCCTCTTTTTGATTTTGAGAAGCTGGCAATTGCAACTAACCACTTTCATTTCAATAACAAGATTGGTCAGGGTGGGTTTGGGTCAGTGTACAAGGGAAAATTGGTAGATGGACAAGAAATAGCAGTAAAGAGACTTTCAAAGACCTCTGGACAAGGGCTTGAAGAGTTTACAAATGAAGTGATGGTGATTTCAAAACTACAACATAGAAATCTTGTGCAGCTTTTTGGTTGTTGTGTGGAGGGAGAAGAAAGAATGTTAGTTTATGAGTACATGCCAAATGGAAGCTTAGATTCAATTATTTTTGATTCAACTAAAGCCAAAGTGTTAGATTGGCGAAAAAGATTTAAGGTCGTTGAAGGAGTTGCTCGAGGACTACTTTATCTCCATAGAGATTCGAGACTAAAAATCATTCATAGAGATCTAAAAGCCAGTAACATTTTACTAGATCGAGATTTAAATCCCAAAATTTCAGATTTTGGTACTGCTAGAATTGTTTACGGCAATGAAGCTCAAGCTAATACCACGAGAGTTATTGGTACTTATGGCTATATGTCTCCGGAATACGTGTTGAATGGCCAATTTTCAGAGAAGTCAGATGTGTTTAGCTTTGGAGTTTTGTTGCTTGAAATTATTAGTGGAAGAAAAAATACAAGCTTCTATGATAATGAACACGCCTTGAGCCTTCTAGGATTTGCATGGAAATTATGGATGGAGGACAATTCAGTTGCTTTGATTGATCAAACAACGTTTGAATTGTGTTGTCAAGCAGAGATTTTGAGGTACATTCATGTAGGATTATTGTGTGTTCAAGAATTGGCAAAGGATAGACCAAATATGACGACAATTCTTTCGATGTTGCACAATGAGATCACAGTTCTTCCAATACCAAAGCAACCAGGATTTAGTAGTAGGCAAATTGAGATTCATACTCAGGCATTCCAACAAAATCATGTTGGAGCTTGCTCCCCAAACATGATCACGCTTACCTCATTTGATGGTCGATAG 2466 39.82 MKPITNTIPLILLLLCFVLKFSSSIDTITSTQFLKDPEAVLSNRGFFELGFFSPPNSTDRFVGIWDKRVPVRTVFWVANRDEPLNNKSGVFAVSNDGNLVVLDEHNKILWNSNVSNAVVNSTARLLDSGNLVLQDSVSGTVIWESFKDPSDKFLPMMKFITNSITNEKVEIVSWKTPSDPSSGNFSFGIDPLTIPEVIIWKNSRPYWRSGPWDGQVFIGIPGMNTDYLSGGNLVIENKTYSLSIANANEAQLFYYYLNPNGNLEENRWNIKDQKYEIAWSAPETECDVYGACGAFGVCDSQRTPICSCLRGFKPEKEEEWNRGNWRNGCVRNSPLECEKKNINVEIGKHEDGFLKMGMVKVPDSAAWILASENECRVQCLSNCSCSAYAYRTGIGCMMWRRDLIDIQQFKNDGADIYVRVAYSEIADESGITKDMKLVIITSVVTGSFILICCIYCLWKRKRQIKFLMNTGGDMKHDKVNEVKLQELPLFDFEKLAIATNHFHFNNKIGQGGFGSVYKGKLVDGQEIAVKRLSKTSGQGLEEFTNEVMVISKLQHRNLVQLFGCCVEGEERMLVYEYMPNGSLDSIIFDSTKAKVLDWRKRFKVVEGVARGLLYLHRDSRLKIIHRDLKASNILLDRDLNPKISDFGTARIVYGNEAQANTTRVIGTYGYMSPEYVLNGQFSEKSDVFSFGVLLLEIISGRKNTSFYDNEHALSLLGFAWKLWMEDNSVALIDQTTFELCCQAEILRYIHVGLLCVQELAKDRPNMTTILSMLHNEITVLPIPKQPGFSSRQIEIHTQAFQQNHVGACSPNMITLTSFDGR 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5585575 5588581 - ClCG03G005375.1 Cla03g00505 269005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00505 821 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 10 803 - -
Cla03g00505 821 SMART serkin_6 502 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00505 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Cla03g00505 821 Gene3D Phosphorylase Kinase; domain 1 475 577 - -
Cla03g00505 821 PIRSF SRK 2 821 IPR024171 GO:0004674
Cla03g00505 821 Pfam D-mannose binding lectin 73 175 IPR001480 -
Cla03g00505 821 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Cla03g00505 821 CDD STKc_IRAK 508 773 - -
Cla03g00505 821 SMART blect_4 31 149 IPR001480 -
Cla03g00505 821 Pfam PAN-like domain 348 406 IPR003609 -
Cla03g00505 821 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524
Cla03g00505 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 213 IPR036426 -
Cla03g00505 821 Gene3D - 21 146 IPR036426 -
Cla03g00505 821 Pfam Protein tyrosine and serine/threonine kinase 503 771 IPR001245 GO:0004672|GO:0006468
Cla03g00505 821 PANTHER - 10 803 - -
Cla03g00505 821 CDD PAN_AP_plant 334 421 - -
Cla03g00505 821 SMART ntp_6 348 420 IPR003609 -
Cla03g00505 821 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544
Cla03g00505 821 CDD B_lectin 31 149 IPR001480 -
Cla03g00505 821 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Cla03g00505 821 ProSiteProfiles PAN/Apple domain profile. 337 421 IPR003609 -
Cla03g00505 821 SUPERFAMILY Protein kinase-like (PK-like) 487 799 IPR011009 -
Cla03g00505 821 ProSiteProfiles Protein kinase domain profile. 502 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00505 Cla-Chr3:5585575 Cla05g01568 Cla-Chr5:26537136 0 dispersed
Cla03g00505 Cla-Chr3:5585575 Cla03g00506 Cla-Chr3:5593734 5.06E-22 tandem
Cla01g02190 Cla-Chr1:35927636 Cla03g00505 Cla-Chr3:5585575 0 wgd
Cla10g00596 Cla-Chr10:8789884 Cla03g00505 Cla-Chr3:5585575 2.31E-12 wgd
Cla02g00145 Cla-Chr2:1583759 Cla03g00505 Cla-Chr3:5585575 5.43E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80423 PF07714 PK_Tyr_Ser-Thr 5.00E-50 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00505 - - cmo:103489252 1464.9