Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00519 | ATGGCGTCCATTAAACGCCACCTCCCTCAAGAAGACGAACACGAGGCGAAGAAACCCAAAATTGCCTGTGTTTCAGATGCTCCTGAGCTGAAGGAGCAGCATCCAGTGGTGCTCAACCCTGCAGACTGCGACTTGGATTTCGAAATCAAAAGTGATGGTCTTCAAGGATCAGCTCTTTATGAGAAAGGTTTTGCTTATTGCTGGTCCGGAGCTCGGGCCACTGTGGGTATTACTGGTGGAAAATATTGTTTTGGTTGCAAGATTATCTCTTTACAGCCAGTTGAAATGAATGATACTGCTCCAGATCAGCAGCATCTTTGTCGTCTCGGCATTTCCAGAGGGGAAAGTCCAGTGGGAAATCTTGGAGAGACCAAAGAAAGTTTTGGATTTGGTGGCACAGGAAAGTTCTCGAACGCTGGAAAATTTTCTGACTATGGTGAAAAGTTTGGGATTGGTGATACTATTGTTTGTTCTGTAAATCTTGAAAGCAAGCCTCTGGCCTCTATTGGATTTTCTAAAAATGGCAAATGGCTGGGTACTGCTATACAATTTGATGCTGGTCCGAGAGGCCTTGGAGTGGTGGATTCTCCATTGAGGAAGCTTCGATGGGAATCAGCATTTTTTCCTCATGTATTGTTGAAGAATGTTGAGGTCCAGTTGCAATTCAATGTTGAAGAGGGGCTTGTTCCAGAAGAAGGCTTTAAACCATGGTCCTGTGCTTTGGACGATGACAATGCATTGCTAGGGCCTACTTTTAATAATGTAAGAGATTGTGAAGTCATAATGATGGTGGGTCTACCGGCTTCTGGAAAAAGTACATGGGCAAAGAAATGGGCAGATGATCATCCTGAGAAACGGTATATTTTGCTTGGGACTAATCTAATTTTGGACCAAATGAAGTTACCAGGTCTATTGCGAAAACATAATTATGGTGAACGCTTTGATCGTTTGATGGATCAAGCAACTGGGATTTTCAATATACTTCTCTCTAGAGCAGCCACTGTACCTCGGAATTACATTATTGATCAAACAAATGTTTACAAGAATGCTCGTAGACGGAAACTGAAACCATTTGCATCTTTCCAGAAAATTGCTGTTGTGGTATTCCCAAAGCCTGAGGAGTTGCAGCGTCGCTCAGCTGAAAGATTTAGAGAAATGGGGAAAGAAGTACCAGCTGATGCAGTGAATGAAATGTTAGCCAATTATATCTTGCCCACTACCAAGGACATGCCTGGATCGGAAGAATATTTTGATGAGGTTATATTTGTAGAACTTGATCGTGCAGAGTCTCAAAGATACTTGGATGGGATGAAACGTGCTCTGCCATCTGAATCACGTGACAACGTTACATCATTTTCAAAAGCTAGTACTGCTCCTCTTGTTTCACCCTCATCTCGAGATCAAGGTCGACATGGTATACCAGATGCTGGGCGATATGGAAGACCAAGATTTATTTCTGAAGTACATCAAGAAAATATGAATTCTCCTTTACCTGGGTTTGTTCCCCCTCACAGACCATACGAGAGTTTGATTGGTGAAACCAGGTACCCAGGTCCAAGTGGCCATTCGCTTCACAGTTATCCTGGGAGTGATCCTTACAGCATTGGTGGACGTGGACGTTTCCTAGACAGTCGTCAGATGGGTGAACTACCCCCAAGGGAATACACTGATGTAGCTTACCCCTTCCCACCCACTGGTCCACCTTATGGAATCCCACCCCCAAGACCTACATATCAATTTCCTTCCAATATGCCTTATGATGGTAGAGCTCATGCCTACCCACGTCCAAGAGTTTCCAGACTCTTCCACGACCATCCTTCCCTTTCCAGGCTCCTTGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATACGCTGATGCTAGCCCAACCAATGGTGTACCCAGTATTGCATCTAAAGCCAATATGGAGGAGAAGAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCGTTCACCCCATTGTTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCGATTCGCAACATCGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGCCGATCTAATGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTATGACTACCTAGTGATAGCTGTGGGAGCTCAAGTTAACACATTCAATACCCCTGGCGTTGTGGAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCTTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCGGCAGAACTTCACGATTTTGTTAATGAGGACTTGGTCAAATTATATCCTGGACTGCAAGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTATGGTCAACTGGTATAGGAACCCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAATGGCTTCGAGTTGAGGGATGTGACAATATATATGCACTTGGTGACTGTGCTACTATAAATCAGCGAAGAGTCATGGAGGATATTTCAGCAATTTTTAGCAAGGCAGACAAAGACAATTCTGGGACACTTACAGTTAAAGAATTTCAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAGGTGGAGCTATATTTGAAGAATAAGCAGATGCACAACATTGTTGATCTTTTAAAAGGATCCAAAGAGGATGTGGCGAAGGAGTCTATCGAATTAGACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACAGCACAGGTGGCTGCGCAGCAAGGTGCATATCTTGCCCATTGTTTTAATCGTATGGACGAGTGCGAAAAAGATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGGCGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCTTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGCACAAGAGCACTGGTGATTACGGATTGGACGAGGCGTTTTGTTTTCGGGAGAGATTCGAGCCGCATATGA | 3519 | 43.45 | MASIKRHLPQEDEHEAKKPKIACVSDAPELKEQHPVVLNPADCDLDFEIKSDGLQGSALYEKGFAYCWSGARATVGITGGKYCFGCKIISLQPVEMNDTAPDQQHLCRLGISRGESPVGNLGETKESFGFGGTGKFSNAGKFSDYGEKFGIGDTIVCSVNLESKPLASIGFSKNGKWLGTAIQFDAGPRGLGVVDSPLRKLRWESAFFPHVLLKNVEVQLQFNVEEGLVPEEGFKPWSCALDDDNALLGPTFNNVRDCEVIMMVGLPASGKSTWAKKWADDHPEKRYILLGTNLILDQMKLPGLLRKHNYGERFDRLMDQATGIFNILLSRAATVPRNYIIDQTNVYKNARRRKLKPFASFQKIAVVVFPKPEELQRRSAERFREMGKEVPADAVNEMLANYILPTTKDMPGSEEYFDEVIFVELDRAESQRYLDGMKRALPSESRDNVTSFSKASTAPLVSPSSRDQGRHGIPDAGRYGRPRFISEVHQENMNSPLPGFVPPHRPYESLIGETRYPGPSGHSLHSYPGSDPYSIGGRGRFLDSRQMGELPPREYTDVAYPFPPTGPPYGIPPPRPTYQFPSNMPYDGRAHAYPRPRVSRLFHDHPSLSRLLVLVTVSGGSLVAYADASPTNGVPSIASKANMEEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNIYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHNIVDLLKGSKEDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMDECEKDPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVITDWTRRFVFGRDSSRI | 1172 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5738128 | 5751865 | - | ClCG03G005510.2 | Cla03g00519 | 269019 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00519 | 1172 | SUPERFAMILY | EF-hand | 963 | 1058 | IPR011992 | - | |
Cla03g00519 | 1172 | CDD | SPRY_hnRNP | 36 | 226 | IPR035778 | - | |
Cla03g00519 | 1172 | Pfam | SPRY domain | 105 | 183 | IPR003877 | GO:0005515 | |
Cla03g00519 | 1172 | PANTHER | NAD(P)H DEHYDROGENASE B2 | 597 | 1172 | - | - | |
Cla03g00519 | 1172 | SUPERFAMILY | FAD/NAD(P)-binding domain | 805 | 967 | IPR036188 | - | |
Cla03g00519 | 1172 | Gene3D | - | 254 | 435 | IPR027417 | - | |
Cla03g00519 | 1172 | MobiDBLite | consensus disorder prediction | 444 | 464 | - | - | |
Cla03g00519 | 1172 | Pfam | AAA domain | 260 | 402 | - | - | |
Cla03g00519 | 1172 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 648 | 973 | IPR023753 | GO:0016491 | |
Cla03g00519 | 1172 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 970 | 1005 | IPR002048 | GO:0005509 | |
Cla03g00519 | 1172 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 259 | 404 | IPR027417 | - | |
Cla03g00519 | 1172 | PANTHER | NADH DEHYDROGENASE | 597 | 1172 | IPR045024 | GO:0003954|GO:0006116 | |
Cla03g00519 | 1172 | Gene3D | - | 33 | 247 | IPR043136 | - | |
Cla03g00519 | 1172 | ProSitePatterns | EF-hand calcium-binding domain. | 983 | 995 | IPR018247 | - | |
Cla03g00519 | 1172 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 753 | 771 | - | - | |
Cla03g00519 | 1172 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 650 | 669 | - | - | |
Cla03g00519 | 1172 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 814 | 832 | - | - | |
Cla03g00519 | 1172 | Gene3D | - | 1015 | 1171 | - | - | |
Cla03g00519 | 1172 | Gene3D | - | 638 | 999 | - | - | |
Cla03g00519 | 1172 | SMART | efh_1 | 974 | 1002 | IPR002048 | GO:0005509 | |
Cla03g00519 | 1172 | SMART | SPRY_3 | 79 | 226 | IPR003877 | GO:0005515 | |
Cla03g00519 | 1172 | MobiDBLite | consensus disorder prediction | 444 | 480 | - | - | |
Cla03g00519 | 1172 | SUPERFAMILY | FAD/NAD(P)-binding domain | 647 | 866 | IPR036188 | - | |
Cla03g00519 | 1172 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 11 | 183 | IPR013320 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01697 | Cla-Chr2:31839586 | Cla03g00519 | Cla-Chr3:5738128 | 0 | dispersed | |
Cla03g00519 | Cla-Chr3:5738128 | Cla04g00197 | Cla-Chr4:6382582 | 3.24E-10 | dispersed | |
Cla05g02229 | Cla-Chr5:33948644 | Cla03g00519 | Cla-Chr3:5738128 | 2.14E-06 | dispersed | |
Cla02g00132 | Cla-Chr2:1458716 | Cla03g00519 | Cla-Chr3:5738128 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00519 | K03885 | - | csv:101204145 | 1125.54 |