Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00519 ATGGCGTCCATTAAACGCCACCTCCCTCAAGAAGACGAACACGAGGCGAAGAAACCCAAAATTGCCTGTGTTTCAGATGCTCCTGAGCTGAAGGAGCAGCATCCAGTGGTGCTCAACCCTGCAGACTGCGACTTGGATTTCGAAATCAAAAGTGATGGTCTTCAAGGATCAGCTCTTTATGAGAAAGGTTTTGCTTATTGCTGGTCCGGAGCTCGGGCCACTGTGGGTATTACTGGTGGAAAATATTGTTTTGGTTGCAAGATTATCTCTTTACAGCCAGTTGAAATGAATGATACTGCTCCAGATCAGCAGCATCTTTGTCGTCTCGGCATTTCCAGAGGGGAAAGTCCAGTGGGAAATCTTGGAGAGACCAAAGAAAGTTTTGGATTTGGTGGCACAGGAAAGTTCTCGAACGCTGGAAAATTTTCTGACTATGGTGAAAAGTTTGGGATTGGTGATACTATTGTTTGTTCTGTAAATCTTGAAAGCAAGCCTCTGGCCTCTATTGGATTTTCTAAAAATGGCAAATGGCTGGGTACTGCTATACAATTTGATGCTGGTCCGAGAGGCCTTGGAGTGGTGGATTCTCCATTGAGGAAGCTTCGATGGGAATCAGCATTTTTTCCTCATGTATTGTTGAAGAATGTTGAGGTCCAGTTGCAATTCAATGTTGAAGAGGGGCTTGTTCCAGAAGAAGGCTTTAAACCATGGTCCTGTGCTTTGGACGATGACAATGCATTGCTAGGGCCTACTTTTAATAATGTAAGAGATTGTGAAGTCATAATGATGGTGGGTCTACCGGCTTCTGGAAAAAGTACATGGGCAAAGAAATGGGCAGATGATCATCCTGAGAAACGGTATATTTTGCTTGGGACTAATCTAATTTTGGACCAAATGAAGTTACCAGGTCTATTGCGAAAACATAATTATGGTGAACGCTTTGATCGTTTGATGGATCAAGCAACTGGGATTTTCAATATACTTCTCTCTAGAGCAGCCACTGTACCTCGGAATTACATTATTGATCAAACAAATGTTTACAAGAATGCTCGTAGACGGAAACTGAAACCATTTGCATCTTTCCAGAAAATTGCTGTTGTGGTATTCCCAAAGCCTGAGGAGTTGCAGCGTCGCTCAGCTGAAAGATTTAGAGAAATGGGGAAAGAAGTACCAGCTGATGCAGTGAATGAAATGTTAGCCAATTATATCTTGCCCACTACCAAGGACATGCCTGGATCGGAAGAATATTTTGATGAGGTTATATTTGTAGAACTTGATCGTGCAGAGTCTCAAAGATACTTGGATGGGATGAAACGTGCTCTGCCATCTGAATCACGTGACAACGTTACATCATTTTCAAAAGCTAGTACTGCTCCTCTTGTTTCACCCTCATCTCGAGATCAAGGTCGACATGGTATACCAGATGCTGGGCGATATGGAAGACCAAGATTTATTTCTGAAGTACATCAAGAAAATATGAATTCTCCTTTACCTGGGTTTGTTCCCCCTCACAGACCATACGAGAGTTTGATTGGTGAAACCAGGTACCCAGGTCCAAGTGGCCATTCGCTTCACAGTTATCCTGGGAGTGATCCTTACAGCATTGGTGGACGTGGACGTTTCCTAGACAGTCGTCAGATGGGTGAACTACCCCCAAGGGAATACACTGATGTAGCTTACCCCTTCCCACCCACTGGTCCACCTTATGGAATCCCACCCCCAAGACCTACATATCAATTTCCTTCCAATATGCCTTATGATGGTAGAGCTCATGCCTACCCACGTCCAAGAGTTTCCAGACTCTTCCACGACCATCCTTCCCTTTCCAGGCTCCTTGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATACGCTGATGCTAGCCCAACCAATGGTGTACCCAGTATTGCATCTAAAGCCAATATGGAGGAGAAGAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCGTTCACCCCATTGTTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCGATTCGCAACATCGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGCCGATCTAATGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTATGACTACCTAGTGATAGCTGTGGGAGCTCAAGTTAACACATTCAATACCCCTGGCGTTGTGGAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCTTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCGGCAGAACTTCACGATTTTGTTAATGAGGACTTGGTCAAATTATATCCTGGACTGCAAGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTATGGTCAACTGGTATAGGAACCCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAATGGCTTCGAGTTGAGGGATGTGACAATATATATGCACTTGGTGACTGTGCTACTATAAATCAGCGAAGAGTCATGGAGGATATTTCAGCAATTTTTAGCAAGGCAGACAAAGACAATTCTGGGACACTTACAGTTAAAGAATTTCAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAGGTGGAGCTATATTTGAAGAATAAGCAGATGCACAACATTGTTGATCTTTTAAAAGGATCCAAAGAGGATGTGGCGAAGGAGTCTATCGAATTAGACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACAGCACAGGTGGCTGCGCAGCAAGGTGCATATCTTGCCCATTGTTTTAATCGTATGGACGAGTGCGAAAAAGATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGGCGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCTTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGCACAAGAGCACTGGTGATTACGGATTGGACGAGGCGTTTTGTTTTCGGGAGAGATTCGAGCCGCATATGA 3519 43.45 MASIKRHLPQEDEHEAKKPKIACVSDAPELKEQHPVVLNPADCDLDFEIKSDGLQGSALYEKGFAYCWSGARATVGITGGKYCFGCKIISLQPVEMNDTAPDQQHLCRLGISRGESPVGNLGETKESFGFGGTGKFSNAGKFSDYGEKFGIGDTIVCSVNLESKPLASIGFSKNGKWLGTAIQFDAGPRGLGVVDSPLRKLRWESAFFPHVLLKNVEVQLQFNVEEGLVPEEGFKPWSCALDDDNALLGPTFNNVRDCEVIMMVGLPASGKSTWAKKWADDHPEKRYILLGTNLILDQMKLPGLLRKHNYGERFDRLMDQATGIFNILLSRAATVPRNYIIDQTNVYKNARRRKLKPFASFQKIAVVVFPKPEELQRRSAERFREMGKEVPADAVNEMLANYILPTTKDMPGSEEYFDEVIFVELDRAESQRYLDGMKRALPSESRDNVTSFSKASTAPLVSPSSRDQGRHGIPDAGRYGRPRFISEVHQENMNSPLPGFVPPHRPYESLIGETRYPGPSGHSLHSYPGSDPYSIGGRGRFLDSRQMGELPPREYTDVAYPFPPTGPPYGIPPPRPTYQFPSNMPYDGRAHAYPRPRVSRLFHDHPSLSRLLVLVTVSGGSLVAYADASPTNGVPSIASKANMEEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNIYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHNIVDLLKGSKEDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMDECEKDPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVITDWTRRFVFGRDSSRI 1172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5738128 5751865 - ClCG03G005510.2 Cla03g00519 269019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00519 1172 SUPERFAMILY EF-hand 963 1058 IPR011992 -
Cla03g00519 1172 CDD SPRY_hnRNP 36 226 IPR035778 -
Cla03g00519 1172 Pfam SPRY domain 105 183 IPR003877 GO:0005515
Cla03g00519 1172 PANTHER NAD(P)H DEHYDROGENASE B2 597 1172 - -
Cla03g00519 1172 SUPERFAMILY FAD/NAD(P)-binding domain 805 967 IPR036188 -
Cla03g00519 1172 Gene3D - 254 435 IPR027417 -
Cla03g00519 1172 MobiDBLite consensus disorder prediction 444 464 - -
Cla03g00519 1172 Pfam AAA domain 260 402 - -
Cla03g00519 1172 Pfam Pyridine nucleotide-disulphide oxidoreductase 648 973 IPR023753 GO:0016491
Cla03g00519 1172 ProSiteProfiles EF-hand calcium-binding domain profile. 970 1005 IPR002048 GO:0005509
Cla03g00519 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 404 IPR027417 -
Cla03g00519 1172 PANTHER NADH DEHYDROGENASE 597 1172 IPR045024 GO:0003954|GO:0006116
Cla03g00519 1172 Gene3D - 33 247 IPR043136 -
Cla03g00519 1172 ProSitePatterns EF-hand calcium-binding domain. 983 995 IPR018247 -
Cla03g00519 1172 PRINTS FAD-dependent pyridine nucleotide reductase signature 753 771 - -
Cla03g00519 1172 PRINTS FAD-dependent pyridine nucleotide reductase signature 650 669 - -
Cla03g00519 1172 PRINTS FAD-dependent pyridine nucleotide reductase signature 814 832 - -
Cla03g00519 1172 Gene3D - 1015 1171 - -
Cla03g00519 1172 Gene3D - 638 999 - -
Cla03g00519 1172 SMART efh_1 974 1002 IPR002048 GO:0005509
Cla03g00519 1172 SMART SPRY_3 79 226 IPR003877 GO:0005515
Cla03g00519 1172 MobiDBLite consensus disorder prediction 444 480 - -
Cla03g00519 1172 SUPERFAMILY FAD/NAD(P)-binding domain 647 866 IPR036188 -
Cla03g00519 1172 SUPERFAMILY Concanavalin A-like lectins/glucanases 11 183 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01697 Cla-Chr2:31839586 Cla03g00519 Cla-Chr3:5738128 0 dispersed
Cla03g00519 Cla-Chr3:5738128 Cla04g00197 Cla-Chr4:6382582 3.24E-10 dispersed
Cla05g02229 Cla-Chr5:33948644 Cla03g00519 Cla-Chr3:5738128 2.14E-06 dispersed
Cla02g00132 Cla-Chr2:1458716 Cla03g00519 Cla-Chr3:5738128 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00519 K03885 - csv:101204145 1125.54