Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00522 | ATGAACGACTTATTCTCAAATTCGTTCAAAAAGTACACGGATCTGAAGCAACAGGCGTATCTGGACAGCATGGAGGCTGGAAATGAGAGTGTAAATTTGGACAGATTCTTTGAAGATGTAGAAAATGTTAAAGATGACATGAAACAGGTTGAGAATTTGTACAAGAAGTTGCAGCAGGCTAATGAGGAGTGCAAGATTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGGCTGATGTCGCCCAAGTTCTCAAGCGAGTCAAAATGATCAAAGGAAAGCTCGAAGCTCTCGAGCGTTCCAATGCCGCTCACCGCAGCCTCCCTGGCTGCGGCCCTGGCTCCTCCGCCGACCGAACTCGAACCTCCGTCGTTAGTGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAACGCCGAGTACAAAGAGACCGTCGAGCGAAGGTACTTCACAGTAACAGGGCAGAAAGCAAATGAAGAGACAATAGAGAATTTGATATCAAGTGGAGAAAGTGAGAGTTTCCTGCAGAAGGCAATTCAAGAACAAGGGAGGGGTCAGATAATGGACACAATTTCAGAGATTCAAGAACGACATGACGCTGTGAAAGAAATAGAGAAGAATTTGTTAGAGCTGCATCAGATATTCTTGGACATGGCGGCTTTGGTTGAGGCTCAAGGCCACCAACTGAACGACATTGAAAGCCATGTGGCACATGCTAACTCCTTCGTTAGAAGAGGAACAGAGCAACTGCAAGAAGCTAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATAATTTTGGGGGCTGTTCTCATTGTCATTCTTCTCTTCCCAATCTTAACTTCAATTTTACCTCATTTGTTGTAG | 912 | 45.18 | MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVENLYKKLQQANEECKIVHNAKTMKELRGRMEADVAQVLKRVKMIKGKLEALERSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAIILGAVLIVILLFPILTSILPHLL | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5768142 | 5769283 | + | ClCG03G005560.1 | Cla03g00522 | 269022 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00522 | 303 | Gene3D | - | 193 | 298 | - | - | |
Cla03g00522 | 303 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
Cla03g00522 | 303 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
Cla03g00522 | 303 | PANTHER | SYNTAXIN-124-RELATED | 6 | 295 | - | - | |
Cla03g00522 | 303 | Coils | Coil | 84 | 104 | - | - | |
Cla03g00522 | 303 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
Cla03g00522 | 303 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
Cla03g00522 | 303 | Gene3D | - | 33 | 160 | - | - | |
Cla03g00522 | 303 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
Cla03g00522 | 303 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
Cla03g00522 | 303 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - | |
Cla03g00522 | 303 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cla03g00522 | 303 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
Cla03g00522 | 303 | Coils | Coil | 33 | 70 | - | - | |
Cla03g00522 | 303 | PANTHER | SYNTAXIN | 6 | 295 | IPR045242 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00522 | Cla-Chr3:5768142 | Cla10g01736 | Cla-Chr10:33181092 | 5.72E-118 | dispersed | |
Cla10g00138 | Cla-Chr10:1458241 | Cla03g00522 | Cla-Chr3:5768142 | 3.27E-07 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00522 | K08486 | - | csv:101217140 | 579.711 |