Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00522 ATGAACGACTTATTCTCAAATTCGTTCAAAAAGTACACGGATCTGAAGCAACAGGCGTATCTGGACAGCATGGAGGCTGGAAATGAGAGTGTAAATTTGGACAGATTCTTTGAAGATGTAGAAAATGTTAAAGATGACATGAAACAGGTTGAGAATTTGTACAAGAAGTTGCAGCAGGCTAATGAGGAGTGCAAGATTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGGCTGATGTCGCCCAAGTTCTCAAGCGAGTCAAAATGATCAAAGGAAAGCTCGAAGCTCTCGAGCGTTCCAATGCCGCTCACCGCAGCCTCCCTGGCTGCGGCCCTGGCTCCTCCGCCGACCGAACTCGAACCTCCGTCGTTAGTGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAACGCCGAGTACAAAGAGACCGTCGAGCGAAGGTACTTCACAGTAACAGGGCAGAAAGCAAATGAAGAGACAATAGAGAATTTGATATCAAGTGGAGAAAGTGAGAGTTTCCTGCAGAAGGCAATTCAAGAACAAGGGAGGGGTCAGATAATGGACACAATTTCAGAGATTCAAGAACGACATGACGCTGTGAAAGAAATAGAGAAGAATTTGTTAGAGCTGCATCAGATATTCTTGGACATGGCGGCTTTGGTTGAGGCTCAAGGCCACCAACTGAACGACATTGAAAGCCATGTGGCACATGCTAACTCCTTCGTTAGAAGAGGAACAGAGCAACTGCAAGAAGCTAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATAATTTTGGGGGCTGTTCTCATTGTCATTCTTCTCTTCCCAATCTTAACTTCAATTTTACCTCATTTGTTGTAG 912 45.18 MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVENLYKKLQQANEECKIVHNAKTMKELRGRMEADVAQVLKRVKMIKGKLEALERSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAIILGAVLIVILLFPILTSILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5768142 5769283 + ClCG03G005560.1 Cla03g00522 269022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00522 303 Gene3D - 193 298 - -
Cla03g00522 303 CDD SNARE_syntaxin1-like 202 264 - -
Cla03g00522 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Cla03g00522 303 PANTHER SYNTAXIN-124-RELATED 6 295 - -
Cla03g00522 303 Coils Coil 84 104 - -
Cla03g00522 303 CDD SynN 33 190 IPR006011 GO:0016020
Cla03g00522 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Cla03g00522 303 Gene3D - 33 160 - -
Cla03g00522 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Cla03g00522 303 SMART tSNARE_6 198 265 IPR000727 -
Cla03g00522 303 Pfam SNARE domain 240 291 IPR000727 -
Cla03g00522 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cla03g00522 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cla03g00522 303 Coils Coil 33 70 - -
Cla03g00522 303 PANTHER SYNTAXIN 6 295 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00522 Cla-Chr3:5768142 Cla10g01736 Cla-Chr10:33181092 5.72E-118 dispersed
Cla10g00138 Cla-Chr10:1458241 Cla03g00522 Cla-Chr3:5768142 3.27E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00522 K08486 - csv:101217140 579.711