Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00554 ATGGAACGCGTCACTTTCGGTAGAGAGGGGAAAGTGGGGCTTTGGCCAACCGAGTCGGTGAGAACACGCAAAGAGCTACCAGACGACCTGGCGATGGATTTTTACTTACTGGTCGAATGGGGTTTGTCGAACTTCGGACCAAAGAACAACACATCGCCTGCCAATCTTTGTCAAACCAAAAGGGGGAAGAAAATTATACTTGACTGTTTCCACGATTGGCTGGAACGAGCGATCCCTCTAATTTCTCTGCCTCACTTTGCTGCGTTTTCCTCTTCGGCAAACTTATCATCGGTTAGCTTGAATGGACGATCCTTTTCATTATCGTGTATTGATTTTCGTTCTGCAGGAGAAGTTTACAGAATTACGGCCCCAAGTATGAGTTGCATCTGCTTCGGTTCCTCTACTGTGGAGAAGAAACGAATCTCTACACGTGCTGATAAGGAATTGGACATTGACTTGCTTGAGAATGTAAAACAAATCTCCTTCAATGAATTAAGATCTGCTTCGAACGATTTCCATTCAAACAATAGAATTGGACGGGGAGGTTTTGGAACTGTTTACAAGGGCACATTAAGGAATGGAGTACAAGTTGCAATAAAGAAGCTCTCCATAGAGTCTAAGCAAGGTGCTCACGAATTTTTGACAGAGATCAAAACCATTTCAAATGTTAGGCATCGAAACCTTGTCGAGTTGATTGGATGCTGTTCTCAAAAAGCTAACCGGATCTTGGTATATGAATATCTGGAGAATAATAGTCTCGACCATGCTTTGTTAGATCCTAAGAAAACAAGCGTGAACCTAGATTGGGGGAAGAGGTCCTCTATTTGCATTGGTACTGCGAGGGGTCTTCAATTTCTTCACGAGGAAGCTGTTCCACGTATTGTGCATAGAGACATCAAGGCTAGTAATATACTCCTTGATGGGGACTTCAATCCGAAAATTGGTGACTTTGGATTAGCCAAACTTTTCCCAGATGATATCACTCACATTAGCACAAGAATTGCAGGAACAACCGGTTATTTGGCTCCAGAGTATGCATTGGGAGGTCAGCTAACTCCAAAGGCTGATGTGTATAGCTTTGGAGTCCTCATCCTTGAAATAGTTAGTGGTAGACGTAGCAGTACAGTTTTTGGGAGAGAAATATCAATACTCTTGCTGGAAAGGGTGTGGGAGCTATATGAAGAAGGAAAACTCTTAGAAATAGTTGATCCTAGACTAGAAGATTATCCTCAGGAAGAAGTGCTTAGGTACATGAAAGTGGCTCTTTTTTGCACACAAGCGGCTGCAAATCGGCGGCCAGCAATGAGCCAAGTCGTTGACATGCTTACAAAGAATATCAAGCTTAACGAGAAGCTACTTACCGCCCCGGGGTTCTATGGAGGCCTGGGGCTTAGTGACATTCCTTCAGTGAGCAAGAAGACCTCGAAGACTTCCACTAGCAACGAGATGAGCTCCGCCGTCATCTCCATAACTCAAATCACCCCCAGATGA 1491 44.06 MERVTFGREGKVGLWPTESVRTRKELPDDLAMDFYLLVEWGLSNFGPKNNTSPANLCQTKRGKKIILDCFHDWLERAIPLISLPHFAAFSSSANLSSVSLNGRSFSLSCIDFRSAGEVYRITAPSMSCICFGSSTVEKKRISTRADKELDIDLLENVKQISFNELRSASNDFHSNNRIGRGGFGTVYKGTLRNGVQVAIKKLSIESKQGAHEFLTEIKTISNVRHRNLVELIGCCSQKANRILVYEYLENNSLDHALLDPKKTSVNLDWGKRSSICIGTARGLQFLHEEAVPRIVHRDIKASNILLDGDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTPKADVYSFGVLILEIVSGRRSSTVFGREISILLLERVWELYEEGKLLEIVDPRLEDYPQEEVLRYMKVALFCTQAAANRRPAMSQVVDMLTKNIKLNEKLLTAPGFYGGLGLSDIPSVSKKTSKTSTSNEMSSAVISITQITPR 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6185640 6196205 - ClCG03G005900.2 Cla03g00554 269054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00554 496 SUPERFAMILY Protein kinase-like (PK-like) 155 442 IPR011009 -
Cla03g00554 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Cla03g00554 496 Gene3D Transferase(Phosphotransferase) domain 1 248 454 - -
Cla03g00554 496 Pfam Protein kinase domain 172 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00554 496 Gene3D Phosphorylase Kinase; domain 1 140 247 - -
Cla03g00554 496 ProSiteProfiles Protein kinase domain profile. 172 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00554 496 PANTHER - 121 488 - -
Cla03g00554 496 ProSitePatterns Protein kinases ATP-binding region signature. 178 201 IPR017441 GO:0005524
Cla03g00554 496 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 121 488 - -
Cla03g00554 496 SMART serkin_6 172 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00554 496 CDD STKc_IRAK 178 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00554 Cla-Chr3:6185640 Cla10g02086 Cla-Chr10:36548099 3.50E-140 dispersed
Cla03g00554 Cla-Chr3:6185640 Cla11g01693 Cla-Chr11:30524384 3.07E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80424 PF00069 Pkinase 1.60E-45 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00554 - - csv:101207026 658.292