Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00570 ATGGCCGTACTCAAACTCCCATTTCTCCTCCTCTCTTTCCCCCTTCTTCTTTTCTCCTCCATTTCCGCCGTCGATTTTCTCTTCAATGGCTTCAATTCCACCGCCGTCTCCCTCTACGGCAACGCCACCATCGAATCCCCTTTCATCGCTCTCACCAACCAAACCAATTTCTCCATCGGCCGCGCTCTGTACCCTTCCAAAATCCCCACTAAGCCTCCTAATTCCTCTTCCCCCTACCCTTTCTCCGCTTCTTTCATCTTCGCCATGGCCCCTTACAGAGATACCCTTCCTGGGCATGGCTTGGTTTTCATTTTCGTTCCCACCACCGGAATCGAGGGAACTGCCTCTGCTCAGAATTTGGGGTTTCTCAACTTCACGCTTAATGGGAACCCCAATAACCATGTCTTCGGAATTGAGTTTGATGTGTTTGCTAATGAGGAATTCAACGACCCCAACGATAATCATGTCGGAATCAACTTGAATTCCTTGACGTCTTTCGTCACCGGAGAAGCTGGGTTTTGGTCTGACGGTGGTGGCGCGGATTCTTTCAACAGGTTCAGGCTTAATAGCGGCGAAAATTATCAAGTCTGGGTTGACTATTCCGACTTTCAGATGAATGTTACGATGGCTCCGGTGGGGATGAAGAAGCCACGGCGGCCGTTGATTAATACCTCTCTGAATCTCTCTGGAATTTTCATGGATGAAATGTATGTGGGGTTCACGAGTTCAACAGGGCAGTTGGTTCAAGGCCATAACATTTTAGCTTGGAGTTTCAGTAACTCTAATTTTTCATTGAGTGAGAGTTTGATTACAACTGGATTGCCCTCCTTCGTCCTCCCGAAAGACCCAATTACCAAATCGAAGTGGTTCATCGCCGGAGTGACGGCCGGCGGATTCCTCGTCGTTTGTTTCATCGCGATGATTTTGGGGATTTTGATCGCCGACCACCGGAGGAAAGCGAGATTGAGAGCCGAAATGGAAGACTGGGAATTGGAGTATTGGCCACACCGAATGACATATCAAGAAATCGAATCGGCAACGAAAGGTTTTGCAGAAGAAAATGTGATCGGAATCGGAGGAAATGGGAAAGTTCATAAAGGGATTTTGGCCGGTGGAGGTTCTGAAGTTGCAGTGAAACGAATTTCTCACGATAACGACGGGATGCGTGAATTCTTAGCTGAAATCTCAAGCATAGGAAGATTAAAGCACAGAAATCTAGTAAGTTTGAGGGGTTGGTGTAAAAAAGAGAAGGGAAATTTCTTGCTTGTTTACGATTACATGGAAAATGGAAGCTTAGATAAATGGGTTTTTGATTGCGAGGAAAGAAACATGTTGAGTTGCGAGGATCGAATCCGAGTATTGAAAAACGTAGCCTCAGGGGTTTTGTATTTACACGAAGGATGGGAATCAAAGGTTCTTCATAGGGATATAAAAGCTAGCAACGTGTTGTTAGATAAGGATATGAATGGAAGGCTAGGAGATTTCGGGCTAGCTCGAGTCCATGGTCACGGTCAAGTGGCGAGCACCACTCGAGTCGTTGGCACCATGGGTTATATTGCCCCCGAGTTGATTCGAACTGGACGAGCCTCTGCTCAATCCGACGTATTTGGCTTTGGGGTTTTGATTTTGGAAGTGATGTGTGGGAGGAGGCCAATAGAGGAAGGGAAGCCACCGTTGGTGGATTGGGTTCGGCGGTTGGTGGTTGAAGGGGAGCTCACAGCAGCGCTCGATGAGAGGCTGAGGAAGAAGGGTGGGTGGAACGAGGAGGAAGTTGAGAGAGTAATGCATTTGGGATTGTTGTGTGCGCATCCTAACCCGAACACTCGGCCAACGATGAGGCAAATTGTGAAGGTTTTGGAAGGGAAGATTGAGTTGGATGAGAGTGAGAGTGAGAGTATGAATGCTTATTTGCTCCAAAGATTGAAGTCACAAGGAATTTGGTCTGATTCTGCTGTTGGTTTTGGGAATAGATTGCATCCCACATTTGAGGATTTTCTTCAGTCTTCTTCAACTTCCATATCTTGGTCTAGTTCCAATGTCCATGGCAGGTGA 2052 47.03 MAVLKLPFLLLSFPLLLFSSISAVDFLFNGFNSTAVSLYGNATIESPFIALTNQTNFSIGRALYPSKIPTKPPNSSSPYPFSASFIFAMAPYRDTLPGHGLVFIFVPTTGIEGTASAQNLGFLNFTLNGNPNNHVFGIEFDVFANEEFNDPNDNHVGINLNSLTSFVTGEAGFWSDGGGADSFNRFRLNSGENYQVWVDYSDFQMNVTMAPVGMKKPRRPLINTSLNLSGIFMDEMYVGFTSSTGQLVQGHNILAWSFSNSNFSLSESLITTGLPSFVLPKDPITKSKWFIAGVTAGGFLVVCFIAMILGILIADHRRKARLRAEMEDWELEYWPHRMTYQEIESATKGFAEENVIGIGGNGKVHKGILAGGGSEVAVKRISHDNDGMREFLAEISSIGRLKHRNLVSLRGWCKKEKGNFLLVYDYMENGSLDKWVFDCEERNMLSCEDRIRVLKNVASGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVASTTRVVGTMGYIAPELIRTGRASAQSDVFGFGVLILEVMCGRRPIEEGKPPLVDWVRRLVVEGELTAALDERLRKKGGWNEEEVERVMHLGLLCAHPNPNTRPTMRQIVKVLEGKIELDESESESMNAYLLQRLKSQGIWSDSAVGFGNRLHPTFEDFLQSSSTSISWSSSNVHGR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6366300 6368351 + ClCG03G006100.1 Cla03g00570 269070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00570 683 ProSiteProfiles Protein kinase domain profile. 350 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00570 683 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524
Cla03g00570 683 Gene3D - 22 268 - -
Cla03g00570 683 Gene3D Phosphorylase Kinase; domain 1 313 426 - -
Cla03g00570 683 Pfam Protein kinase domain 351 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00570 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Cla03g00570 683 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 8 676 - -
Cla03g00570 683 CDD lectin_legume_LecRK_Arcelin_ConA 24 256 IPR001220 GO:0030246
Cla03g00570 683 Pfam Legume lectin domain 24 263 IPR001220 GO:0030246
Cla03g00570 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 266 IPR013320 -
Cla03g00570 683 PANTHER - 8 676 - -
Cla03g00570 683 SUPERFAMILY Protein kinase-like (PK-like) 328 620 IPR011009 -
Cla03g00570 683 Gene3D Transferase(Phosphotransferase) domain 1 427 642 - -
Cla03g00570 683 SMART serkin_6 350 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00570 683 CDD STKc_IRAK 356 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00570 Cla-Chr3:6366300 Cla07g00266 Cla-Chr7:2951948 2.87E-173 dispersed
Cla03g00570 Cla-Chr3:6366300 Cla10g02025 Cla-Chr10:36020308 5.58E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80425 PF00069 Pkinase 1.10E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00570 - - csv:101222577 1207.97