Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00578 ATGACGTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGAATTGTTTGCCAGCAAGTCAATGTTACTTCTTTGGAGGAAGTAATTAAACACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTAGATGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAAGATAGGTCTGATCGCGAACTCGTTACCCCCTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTGCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTTTGTAAGGTGTATAAAAGAACAACAGAATTTCGCAGATTGTGTGAAATTATCAGAAATCATCTTGCCAACCTCAACAAGTACAGAGACCAAAGGGATCGGCCTGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACCGAGATCTTCTGGATATCCAATAGCAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCTGTTCTTTTAGCATCTCTTGCAGTGTCCCCCTATGACTCTAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCCAATCTTATAGGGTTCAGCTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCAAATCTTTTTTCTGAACTGGTGTCTAAAGGAGTCCTCAGCTGCGCAACTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCGCTTGATCTTGCAACAAAATTGCAACCCTTATTAAACAAAGTATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAATACGTTCCGGCTCTTGAGAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCGAGGAACATTGTGTCATTTGGCAATTTGGGTATTGAATCAGATGGGCTTCGGGACCACCTGACTGTTCTCGCTGAATCCTTAAATAAAGCAAGAGCTATGATCTATCCTCCAGTTATGAAGGCATCAAAAACAAGTGATATATTGCCTGATTTGGCTGATATTGTTGATAAGGAGCATAAGAGACTGCTTGCTCGTAAATCTATAATTGAGAAAAGGAAGGAAGAGCAGGAACGGCAACTTTTGGAAATGGAACGCGAGGAGGAATCAAGAAGGTTGAAATTACTAAAGATAACAGAAGAGGCTGAGCAGAAGCGGCTTGCTGCAGAATACGAACAAAGAAAAAACCAACGGCTTCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTACAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCGGTTCTTGACTCCGAAAAGTTGACGAAACAAACTCTAATGCAATTGGCCCTTACTGAACAATTGAGGGAGAGGCAGGAAATGGAGAAGAAACTGCAAAAGCTAGCCAAAACTATGGATTATCTCGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGATGCTGCATTTCAGCAGCGATTGCTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGAGTTCATACCTTCTAGCTAGGATCATGAACTTTGATAAAGACAAACTGATACCTTTGCACATGATTTATTTAGGGAGTTTCTTTTCTGGTTTTCAGCTAGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCTAGAATGATGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATTGGTCTTCGCCAAGAGGAATTCAGCAGGCGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAATAATTCAGGCCCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTGCGCGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCCGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCATCTGATGCACCTGCTAGACCTGACTTTCCTCCTGCTTCTCGCCCTCTGGATTCTGGGACTGCTGCTCCTGCCGCTGCTGCTGCAGCTGCAGCTGCCGCACCATCTCCAGCAAAATACGTCCCAAGGTTTCGACGGTCTGAAGGCTCCACCGCTACTGCACCACCACCGGAATCTGATCGATGGGGAAGCAGCCGGCCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCAGTGATGACCGTAGACCTGCATTTGGAATTTCAAGGTCATCGTGGTCCTCATCCCGAGTTCCTACTCGTGCTAGCACAGACCGCTGA 3012 43.69 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISNSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLASLAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRANLFSELVSKGVLSCATQEVKDLYHLLEHEFFPLDLATKLQPLLNKVSKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVSFGNLGIESDGLRDHLTVLAESLNKARAMIYPPVMKASKTSDILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIDAAFQQRLLEERMIHERDQQSSYLLARIMNFDKDKLIPLHMIYLGSFFSGFQLEVELSKQRHEGDLKEKNRLARMMESKKIFQERVIGLRQEEFSRRRAEREEQIRQIIQARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSSDAPARPDFPPASRPLDSGTAAPAAAAAAAAAAPSPAKYVPRFRRSEGSTATAPPPESDRWGSSRPDNRPSQPDSWRSDDRRPAFGISRSSWSSSRVPTRASTDR 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6510414 6522075 - ClCG03G006190.1 Cla03g00578 269078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00578 1003 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 732 - -
Cla03g00578 1003 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cla03g00578 1003 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 732 IPR027512 GO:0005852
Cla03g00578 1003 Coils Coil 669 699 - -
Cla03g00578 1003 MobiDBLite consensus disorder prediction 846 893 - -
Cla03g00578 1003 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 978 IPR027512 GO:0005852
Cla03g00578 1003 Coils Coil 603 649 - -
Cla03g00578 1003 MobiDBLite consensus disorder prediction 985 1003 - -
Cla03g00578 1003 SMART PINT_4 441 532 IPR000717 -
Cla03g00578 1003 Coils Coil 561 600 - -
Cla03g00578 1003 Coils Coil 831 890 - -
Cla03g00578 1003 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 757 945 - -
Cla03g00578 1003 Coils Coil 806 826 - -
Cla03g00578 1003 Gene3D - 363 494 - -
Cla03g00578 1003 Gene3D - 269 343 - -
Cla03g00578 1003 Gene3D UVR domain 217 268 - -
Cla03g00578 1003 Coils Coil 93 120 - -
Cla03g00578 1003 Pfam PCI domain 376 509 IPR000717 -
Cla03g00578 1003 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 757 945 IPR027512 GO:0005852
Cla03g00578 1003 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Cla03g00578 1003 MobiDBLite consensus disorder prediction 846 1003 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00578 Cla-Chr3:6510414 Cla03g01682 Cla-Chr3:32685298 0 dispersed
Cla03g00576 Cla-Chr3:6477702 Cla03g00578 Cla-Chr3:6510414 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00578 K03254 - csv:101209344 1542.71