Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00581 ATGTCTTTGCTTAGACCTTACGGTAAGGTCGACGAAACCGACCAATTGAGGCTCGATGCTAGCCGGCGGACTCGGAAGAGGATTGCTGTCATTGTCTTGTCCTCTGTTGTTCTTGTTGGTGTTGTTGTTGGTGTTGTGTTTGGTACTATAAATGCTTCCAACAAAAATGATGACAGTAACAATCAAAATGGTGCACTTTCAACTTCAATCAAAGCAATTTGTGATGTGACTTTGTATCCTGATACATGTCACAATGCTTTTGGTCCTTTAGCTAACTTGAGCCATCTCAACCCCGGTGAGATATCCAAGCTTTCGGTTCAATTGGCTCTCGATGAATTGTCGCGAGTGGCTAACTACATTTTTGATCATGCCATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGGAAAATTGTCATGAACTTTTGGACTTAGCATTGGATCATTTGAATATCTCATTGTCTTCTAGTGATATTACTTTGCTTAAAGCTGTGGATGACTTGAAAACATGGCTAACTTCAGCAGCTACTTACCAGCAGACTTGTATCGACGGCCTCGCGGAAGTTGATCCGGCTTTGGCGAACCTCATTGCAAATTACTTGAAGAACTCCACTGAATTGACTAGCAATGGTCTTGCCATTCTCTCGTTCTTTTCAAAGCTTACAGATTCTTTAAGTCTACGACGATTGATGACTTATGATAATCGCCAAAGCAAGGGAGATTGGGTGCGGCCGATACTCCGAAAGCTAGCTCAAACCGATATCAGGAAGCAGGCTAACATCGTCGTAGCGGTAGACGGTTCGGGAAAGTACAAAACAATCTCTGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAATTGTGATCTATGTGAAGAAGGGAACTTACAAGGAGAATGTTGAAGTTAAGAAGAACAAATGGAACGTGGTGATGGTTGGTGATGGAATGAATGCAACCACAGTAATTGGCAGCCTTAATTTCATAGATGGGACACCAACATTTTCAACTGCAACATTTGCTGCAAAAGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAGAACACTGCTGGACCAAGCAAACACCAGGCGGTCGCCCTGATGTCGACATCCGACCAATCAATCTTCTATCGTTGCCGTATAGAGGCATACCAAGACAGTCTCTACGCGCACTCCAACCGTCAATTCTACCGTGAATGCAACGTTTACGGCACAGTTGATTTCATCTTCGGAAATTCAGCAGTAGTCCTACAAAACTGCACTATTGCACCCAAGTTGCCTCTTTTAGGCCAAATGAATACAATCACTGCTCAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCGGTACAAGGCTGTTCAATCCGACCGTTCGAGAACTTGAAAGCTACCAAAACTTATCTCGGTCGTCCGTGGAAGAACTACTCGACGACGGTCTATATGCAAAATAATTTGGGGAGCTTGATTGACCCAACTGGCTGGCTGCCATGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGTCCTGGTTCTTCCACAGCCAAAAGAGTGAAATGGAAGGGTTTGAAGAACATTAGCATTAAAACTGCTAAAGAGTTCACAGTTTCTTCCTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTTCCCTTCAATGCCAACCTTTGA 1704 43.31 MSLLRPYGKVDETDQLRLDASRRTRKRIAVIVLSSVVLVGVVVGVVFGTINASNKNDDSNNQNGALSTSIKAICDVTLYPDTCHNAFGPLANLSHLNPGEISKLSVQLALDELSRVANYIFDHAITNSTDNKTILALENCHELLDLALDHLNISLSSSDITLLKAVDDLKTWLTSAATYQQTCIDGLAEVDPALANLIANYLKNSTELTSNGLAILSFFSKLTDSLSLRRLMTYDNRQSKGDWVRPILRKLAQTDIRKQANIVVAVDGSGKYKTISAALKAVPDKSKKRIVIYVKKGTYKENVEVKKNKWNVVMVGDGMNATTVIGSLNFIDGTPTFSTATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCRIEAYQDSLYAHSNRQFYRECNVYGTVDFIFGNSAVVLQNCTIAPKLPLLGQMNTITAQGRFDPNQNTGISVQGCSIRPFENLKATKTYLGRPWKNYSTTVYMQNNLGSLIDPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTAKRVKWKGLKNISIKTAKEFTVSSFIDGKDWISKAQVPFNANL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6573097 6575055 - ClCG03G006220.1 Cla03g00581 269081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00581 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857
Cla03g00581 567 PANTHER PECTINESTERASE 19 563 - -
Cla03g00581 567 TIGRFAM PME_inhib: pectinesterase inhibitor domain 63 216 IPR006501 GO:0004857
Cla03g00581 567 Gene3D - 256 567 IPR012334 -
Cla03g00581 567 CDD PMEI-like_3 72 221 - -
Cla03g00581 567 SMART PMEI_2 65 215 IPR006501 GO:0004857
Cla03g00581 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Cla03g00581 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Cla03g00581 567 Pfam Pectinesterase 261 552 IPR000070 GO:0030599|GO:0042545
Cla03g00581 567 SUPERFAMILY Pectin lyase-like 259 564 IPR011050 -
Cla03g00581 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Cla03g00581 567 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 24-RELATED 19 563 - -
Cla03g00581 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00581 Cla-Chr3:6573097 Cla05g00670 Cla-Chr5:6218084 2.29E-145 dispersed
Cla03g00581 Cla-Chr3:6573097 Cla06g00463 Cla-Chr6:5642876 1.76E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00581 - - csv:101210577 953.355