Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00588 | ATGGCTCTTGTCGTGCATAGAGATTCCTTGAATAAGCAGATGGATACAAGCAAGTATGTGAGATATACGCCTGAACAAGTCGATGCATTAGAAAGGGTTTATGCAGAATGCCCAAAACCCAGTTCGTTGAGGAGGCAACAGCTCATTCGGGAGTGTCCTATTCTCTCTAATATTGAGCCGAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGCTAACTGCGATGAACAAGCTGTTGATGGAAGAGAATGACCGTCTGCAGACGCAAGTCTCTCGTTTGGTTTACGAGAACGGATACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACAGCATCAACAGCAAAACCCAACTAAGCATACTCAAAAAGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTATCCAAGGCAACAGGAACTGCCGTCGACTGGGTACAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTTAGTCTTGAGCCCATGAAGGTGGCTGAAATTCTCAAAGATCGTCTGTCATGGTTTCGTGACTGCCGTTGTGTTGATGTACTAAGTGCAATCTCTACAGGAAATGGGGGGACCATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCCGCAGCACGTGACTTTTGGACTCTTCGATACACCACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCGTTAAGGTCGTCTACTGGTGGCCCATCAGGGCCCCCTCCATCCAGTTTCGTAAGAGCTGAAATGCTTCCAAGCGGGTATCTTATTCGAGCTTGTGAGGGTGGTTCCCTTATTCACATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTCTAAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTTGCTGCCTTGCGCTATGTTCGACAAATTGCTCAAGAGGCAAGTGGAGAAATTCAATTGGGTGGAGGCCGCCAACCGGCTGTTTTAAGGACTTTCAGTCAAAGACTTTGTAGGGGTTTTAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAATAGAGGATGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCTGTTCGCAATATAACACTTCATTGTATCCTACTTTTGGAGGTGTATTGTGTGCCAAGGCGTCAATGTTACTGCAGAATGTCCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGTTCAGAATGGGCTGATTATGGGGTCGATGCGTACTCTGCCGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCGAGATCCGGTGGCTTCCCTAGTGGTCATGTCATTTTACCACTTGCAAATACGGTCGAGAATGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCTTTAGGAGGACGGGATATGTATTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATACAGTTGGTGCCTGTGCTCAGCTTGTATTTGCACCTATAGATGAATCATTTGCCGATGATGCTCCCTTGCTGCCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGATGCGCCTGCAGCTACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGAACTACCCGCCCAGGAGGTGAAACTGATGTTACAAACTACAACCTCAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTCGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCGAGACAATATGTGCGAACTGTTGTGGGATCAGTTCAAAGGGTTGCTATGGCTATCGCCCCCTCGCAGCTTGGCCCCCAAATCGGTCCAAAAAGCCTTCCCGGCTCCCCAGAGGCTCTCACATTAGCTCAGTGGATCGCACGAAGCTATAGGATCCACTCAGGGACAGAGCTCTTTCAAGTTGAATCCCTATCTGATGATGCTATCTTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCATCTCCTGTTTTCACATTTGCGAACCAAGCTGGACTTGACATGCTGGAAACTACCCTAGTCGCTCTTCAAGATATAACGCTTGACAAGATCCTCGATGATGCTGGCCGGAAGATACTGTGCTCCGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGGCTGGTGTCGTATGAACAGGCAATTGCATGGAAAGTTGTGAATGATGATGATGTCCATCACTGTCTGGCTTTCATAAATCTGGTTTATGAATCACTGATATTCAAAGGGAGAATGAGCAATTTTCCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAGAAAGATAATCAACTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCGAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATATATCAAAGGTCTTGTCGATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAAGTTCATTTGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGAGAATTATATCCAATAACTCAAAGAATTCTGAGGAGCCAAGCTTGTTTCAAGAGATCTCTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCGAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGATAAAGAGCGACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGCAAGTGTTTGATCACGACGTAATTTCAGCTAATGACTTGATGGGTGAAGCAGAAATCGACCTTCAGCCGATGATAACATCTGCACTGGCATTTGGAGATGCTGAAATGTTTGAGAATATGCAGATAGGGAAATGGTTGAAGTCAGATGACAATGCCCTCATCGATGACAGTGCTGTCGTCATCGTCGACGGAAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAATAA | 3516 | 44.99 | MALVVHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQTQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQQHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPMKVAEILKDRLSWFRDCRCVDVLSAISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLRSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRMTVAALRYVRQIAQEASGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGIEDVTVVINSSPNKFLCSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARSGGFPSGHVILPLANTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDENTVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTTRPGGETDVTNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGPQIGPKSLPGSPEALTLAQWIARSYRIHSGTELFQVESLSDDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDITLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRLVSYEQAIAWKVVNDDDVHHCLAFINLVYESLIFKGRMSNFPADFRRHESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEERSKFIWSKYELQEFLKPSLRIISNNSKNSEEPSLFQEISDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDPFITLTLGQQTAKTTVIKSDLNPVWNEELMLSQVFDHDVISANDLMGEAEIDLQPMITSALAFGDAEMFENMQIGKWLKSDDNALIDDSAVVIVDGKVKQEVSLKLQNVESGEVYLELEWMPLDQ | 1171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6693553 | 6708870 | - | ClCG03G006260.2 | Cla03g00588 | 269088 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00588 | 1171 | SMART | HOX_1 | 15 | 81 | IPR001356 | GO:0003677 | |
Cla03g00588 | 1171 | Gene3D | - | 10 | 84 | - | - | |
Cla03g00588 | 1171 | ProSiteProfiles | 'Homeobox' domain profile. | 13 | 77 | IPR001356 | GO:0003677 | |
Cla03g00588 | 1171 | SUPERFAMILY | Bet v1-like | 166 | 376 | - | - | |
Cla03g00588 | 1171 | SMART | START_1 | 165 | 374 | IPR002913 | GO:0008289 | |
Cla03g00588 | 1171 | MobiDBLite | consensus disorder prediction | 997 | 1017 | - | - | |
Cla03g00588 | 1171 | Pfam | C2 domain | 1026 | 1104 | IPR000008 | - | |
Cla03g00588 | 1171 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 864 | 995 | IPR001164 | GO:0005096 | |
Cla03g00588 | 1171 | Gene3D | - | 187 | 377 | IPR023393 | - | |
Cla03g00588 | 1171 | ProSiteProfiles | START domain profile. | 156 | 383 | IPR002913 | GO:0008289 | |
Cla03g00588 | 1171 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 1023 | 1169 | IPR035892 | - | |
Cla03g00588 | 1171 | Pfam | Homeodomain | 18 | 76 | IPR001356 | GO:0003677 | |
Cla03g00588 | 1171 | CDD | homeodomain | 18 | 78 | IPR001356 | GO:0003677 | |
Cla03g00588 | 1171 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 864 | 981 | IPR037278 | - | |
Cla03g00588 | 1171 | Gene3D | C2 domain | 1023 | 1171 | IPR035892 | - | |
Cla03g00588 | 1171 | MobiDBLite | consensus disorder prediction | 126 | 156 | - | - | |
Cla03g00588 | 1171 | SMART | C2_3c | 1026 | 1111 | IPR000008 | - | |
Cla03g00588 | 1171 | CDD | bZIP | 70 | 109 | - | - | |
Cla03g00588 | 1171 | Pfam | START domain | 166 | 373 | IPR002913 | GO:0008289 | |
Cla03g00588 | 1171 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 | 7 | 838 | - | - | |
Cla03g00588 | 1171 | Coils | Coil | 87 | 107 | - | - | |
Cla03g00588 | 1171 | SMART | arf_gap_3 | 864 | 986 | IPR001164 | GO:0005096 | |
Cla03g00588 | 1171 | Pfam | Putative GTPase activating protein for Arf | 865 | 980 | IPR001164 | GO:0005096 | |
Cla03g00588 | 1171 | PRINTS | HIV Rev interacting protein signature | 876 | 895 | IPR001164 | GO:0005096 | |
Cla03g00588 | 1171 | PRINTS | HIV Rev interacting protein signature | 916 | 937 | IPR001164 | GO:0005096 | |
Cla03g00588 | 1171 | PRINTS | HIV Rev interacting protein signature | 895 | 912 | IPR001164 | GO:0005096 | |
Cla03g00588 | 1171 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 | 7 | 838 | IPR044830 | GO:0003700 | |
Cla03g00588 | 1171 | SUPERFAMILY | Homeodomain-like | 18 | 80 | IPR009057 | - | |
Cla03g00588 | 1171 | CDD | ArfGap | 867 | 973 | - | - | |
Cla03g00588 | 1171 | ProSiteProfiles | C2 domain profile. | 1008 | 1124 | IPR000008 | - | |
Cla03g00588 | 1171 | Pfam | MEKHLA domain | 699 | 837 | IPR013978 | - | |
Cla03g00588 | 1171 | Gene3D | Arf GTPase activating protein | 826 | 984 | IPR038508 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g02455 | Cla03g00588 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02065 | Cla-Chr2:35684957 | Cla03g00588 | Cla-Chr3:6693553 | 0 | dispersed | |
Cla03g00588 | Cla-Chr3:6693553 | Cla09g00009 | Cla-Chr9:127599 | 0 | dispersed | |
Cla04g01044 | Cla-Chr4:25616339 | Cla03g00588 | Cla-Chr3:6693553 | 3.43E-33 | dispersed | |
Cla10g01995 | Cla-Chr10:35802426 | Cla03g00588 | Cla-Chr3:6693553 | 2.11E-19 | dispersed | |
Cla01g00758 | Cla-Chr1:8847181 | Cla03g00588 | Cla-Chr3:6693553 | 2.12E-40 | transposed | |
Cla01g01468 | Cla-Chr1:29223170 | Cla03g00588 | Cla-Chr3:6693553 | 1.67E-23 | transposed | |
Cla01g02455 | Cla-Chr1:38256076 | Cla03g00588 | Cla-Chr3:6693553 | 1.03E-158 | transposed | |
Cla05g02675 | Cla-Chr5:37929342 | Cla03g00588 | Cla-Chr3:6693553 | 5.95E-92 | transposed | |
Cla07g00663 | Cla-Chr7:14233316 | Cla03g00588 | Cla-Chr3:6693553 | 7.39E-19 | transposed | |
Cla07g01131 | Cla-Chr7:28182184 | Cla03g00588 | Cla-Chr3:6693553 | 8.18E-18 | transposed | |
Cla10g01594 | Cla-Chr10:31405481 | Cla03g00588 | Cla-Chr3:6693553 | 5.09E-07 | transposed | |
Cla11g00235 | Cla-Chr11:2709253 | Cla03g00588 | Cla-Chr3:6693553 | 2.44E-08 | transposed | |
Cla11g01802 | Cla-Chr11:31674527 | Cla03g00588 | Cla-Chr3:6693553 | 1.78E-23 | transposed | |
Cla11g01479 | Cla-Chr11:28421149 | Cla03g00588 | Cla-Chr3:6693553 | 0 | transposed | |
Cla01g02453 | Cla-Chr1:38229879 | Cla03g00588 | Cla-Chr3:6693553 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60798 | PF01852 | START | 1.10E-49 | CL0209 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00588 | K09338 | - | csv:101211318 | 1586.24 |