Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00588 ATGGCTCTTGTCGTGCATAGAGATTCCTTGAATAAGCAGATGGATACAAGCAAGTATGTGAGATATACGCCTGAACAAGTCGATGCATTAGAAAGGGTTTATGCAGAATGCCCAAAACCCAGTTCGTTGAGGAGGCAACAGCTCATTCGGGAGTGTCCTATTCTCTCTAATATTGAGCCGAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGCTAACTGCGATGAACAAGCTGTTGATGGAAGAGAATGACCGTCTGCAGACGCAAGTCTCTCGTTTGGTTTACGAGAACGGATACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACAGCATCAACAGCAAAACCCAACTAAGCATACTCAAAAAGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTATCCAAGGCAACAGGAACTGCCGTCGACTGGGTACAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTTAGTCTTGAGCCCATGAAGGTGGCTGAAATTCTCAAAGATCGTCTGTCATGGTTTCGTGACTGCCGTTGTGTTGATGTACTAAGTGCAATCTCTACAGGAAATGGGGGGACCATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCCGCAGCACGTGACTTTTGGACTCTTCGATACACCACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCGTTAAGGTCGTCTACTGGTGGCCCATCAGGGCCCCCTCCATCCAGTTTCGTAAGAGCTGAAATGCTTCCAAGCGGGTATCTTATTCGAGCTTGTGAGGGTGGTTCCCTTATTCACATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTCTAAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTTGCTGCCTTGCGCTATGTTCGACAAATTGCTCAAGAGGCAAGTGGAGAAATTCAATTGGGTGGAGGCCGCCAACCGGCTGTTTTAAGGACTTTCAGTCAAAGACTTTGTAGGGGTTTTAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAATAGAGGATGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCTGTTCGCAATATAACACTTCATTGTATCCTACTTTTGGAGGTGTATTGTGTGCCAAGGCGTCAATGTTACTGCAGAATGTCCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGTTCAGAATGGGCTGATTATGGGGTCGATGCGTACTCTGCCGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCGAGATCCGGTGGCTTCCCTAGTGGTCATGTCATTTTACCACTTGCAAATACGGTCGAGAATGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCTTTAGGAGGACGGGATATGTATTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATACAGTTGGTGCCTGTGCTCAGCTTGTATTTGCACCTATAGATGAATCATTTGCCGATGATGCTCCCTTGCTGCCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGATGCGCCTGCAGCTACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGAACTACCCGCCCAGGAGGTGAAACTGATGTTACAAACTACAACCTCAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTCGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCGAGACAATATGTGCGAACTGTTGTGGGATCAGTTCAAAGGGTTGCTATGGCTATCGCCCCCTCGCAGCTTGGCCCCCAAATCGGTCCAAAAAGCCTTCCCGGCTCCCCAGAGGCTCTCACATTAGCTCAGTGGATCGCACGAAGCTATAGGATCCACTCAGGGACAGAGCTCTTTCAAGTTGAATCCCTATCTGATGATGCTATCTTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCATCTCCTGTTTTCACATTTGCGAACCAAGCTGGACTTGACATGCTGGAAACTACCCTAGTCGCTCTTCAAGATATAACGCTTGACAAGATCCTCGATGATGCTGGCCGGAAGATACTGTGCTCCGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGGCTGGTGTCGTATGAACAGGCAATTGCATGGAAAGTTGTGAATGATGATGATGTCCATCACTGTCTGGCTTTCATAAATCTGGTTTATGAATCACTGATATTCAAAGGGAGAATGAGCAATTTTCCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAGAAAGATAATCAACTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCGAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATATATCAAAGGTCTTGTCGATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAAGTTCATTTGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGAGAATTATATCCAATAACTCAAAGAATTCTGAGGAGCCAAGCTTGTTTCAAGAGATCTCTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCGAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGATAAAGAGCGACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGCAAGTGTTTGATCACGACGTAATTTCAGCTAATGACTTGATGGGTGAAGCAGAAATCGACCTTCAGCCGATGATAACATCTGCACTGGCATTTGGAGATGCTGAAATGTTTGAGAATATGCAGATAGGGAAATGGTTGAAGTCAGATGACAATGCCCTCATCGATGACAGTGCTGTCGTCATCGTCGACGGAAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAATAA 3516 44.99 MALVVHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQTQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQQHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPMKVAEILKDRLSWFRDCRCVDVLSAISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLRSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRMTVAALRYVRQIAQEASGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGIEDVTVVINSSPNKFLCSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARSGGFPSGHVILPLANTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDENTVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTTRPGGETDVTNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGPQIGPKSLPGSPEALTLAQWIARSYRIHSGTELFQVESLSDDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDITLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRLVSYEQAIAWKVVNDDDVHHCLAFINLVYESLIFKGRMSNFPADFRRHESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEERSKFIWSKYELQEFLKPSLRIISNNSKNSEEPSLFQEISDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDPFITLTLGQQTAKTTVIKSDLNPVWNEELMLSQVFDHDVISANDLMGEAEIDLQPMITSALAFGDAEMFENMQIGKWLKSDDNALIDDSAVVIVDGKVKQEVSLKLQNVESGEVYLELEWMPLDQ 1171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6693553 6708870 - ClCG03G006260.2 Cla03g00588 269088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00588 1171 SMART HOX_1 15 81 IPR001356 GO:0003677
Cla03g00588 1171 Gene3D - 10 84 - -
Cla03g00588 1171 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cla03g00588 1171 SUPERFAMILY Bet v1-like 166 376 - -
Cla03g00588 1171 SMART START_1 165 374 IPR002913 GO:0008289
Cla03g00588 1171 MobiDBLite consensus disorder prediction 997 1017 - -
Cla03g00588 1171 Pfam C2 domain 1026 1104 IPR000008 -
Cla03g00588 1171 ProSiteProfiles ARF GTPase-activating proteins domain profile. 864 995 IPR001164 GO:0005096
Cla03g00588 1171 Gene3D - 187 377 IPR023393 -
Cla03g00588 1171 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289
Cla03g00588 1171 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1023 1169 IPR035892 -
Cla03g00588 1171 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Cla03g00588 1171 CDD homeodomain 18 78 IPR001356 GO:0003677
Cla03g00588 1171 SUPERFAMILY ArfGap/RecO-like zinc finger 864 981 IPR037278 -
Cla03g00588 1171 Gene3D C2 domain 1023 1171 IPR035892 -
Cla03g00588 1171 MobiDBLite consensus disorder prediction 126 156 - -
Cla03g00588 1171 SMART C2_3c 1026 1111 IPR000008 -
Cla03g00588 1171 CDD bZIP 70 109 - -
Cla03g00588 1171 Pfam START domain 166 373 IPR002913 GO:0008289
Cla03g00588 1171 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 838 - -
Cla03g00588 1171 Coils Coil 87 107 - -
Cla03g00588 1171 SMART arf_gap_3 864 986 IPR001164 GO:0005096
Cla03g00588 1171 Pfam Putative GTPase activating protein for Arf 865 980 IPR001164 GO:0005096
Cla03g00588 1171 PRINTS HIV Rev interacting protein signature 876 895 IPR001164 GO:0005096
Cla03g00588 1171 PRINTS HIV Rev interacting protein signature 916 937 IPR001164 GO:0005096
Cla03g00588 1171 PRINTS HIV Rev interacting protein signature 895 912 IPR001164 GO:0005096
Cla03g00588 1171 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 838 IPR044830 GO:0003700
Cla03g00588 1171 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Cla03g00588 1171 CDD ArfGap 867 973 - -
Cla03g00588 1171 ProSiteProfiles C2 domain profile. 1008 1124 IPR000008 -
Cla03g00588 1171 Pfam MEKHLA domain 699 837 IPR013978 -
Cla03g00588 1171 Gene3D Arf GTPase activating protein 826 984 IPR038508 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02455 Cla03g00588 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02065 Cla-Chr2:35684957 Cla03g00588 Cla-Chr3:6693553 0 dispersed
Cla03g00588 Cla-Chr3:6693553 Cla09g00009 Cla-Chr9:127599 0 dispersed
Cla04g01044 Cla-Chr4:25616339 Cla03g00588 Cla-Chr3:6693553 3.43E-33 dispersed
Cla10g01995 Cla-Chr10:35802426 Cla03g00588 Cla-Chr3:6693553 2.11E-19 dispersed
Cla01g00758 Cla-Chr1:8847181 Cla03g00588 Cla-Chr3:6693553 2.12E-40 transposed
Cla01g01468 Cla-Chr1:29223170 Cla03g00588 Cla-Chr3:6693553 1.67E-23 transposed
Cla01g02455 Cla-Chr1:38256076 Cla03g00588 Cla-Chr3:6693553 1.03E-158 transposed
Cla05g02675 Cla-Chr5:37929342 Cla03g00588 Cla-Chr3:6693553 5.95E-92 transposed
Cla07g00663 Cla-Chr7:14233316 Cla03g00588 Cla-Chr3:6693553 7.39E-19 transposed
Cla07g01131 Cla-Chr7:28182184 Cla03g00588 Cla-Chr3:6693553 8.18E-18 transposed
Cla10g01594 Cla-Chr10:31405481 Cla03g00588 Cla-Chr3:6693553 5.09E-07 transposed
Cla11g00235 Cla-Chr11:2709253 Cla03g00588 Cla-Chr3:6693553 2.44E-08 transposed
Cla11g01802 Cla-Chr11:31674527 Cla03g00588 Cla-Chr3:6693553 1.78E-23 transposed
Cla11g01479 Cla-Chr11:28421149 Cla03g00588 Cla-Chr3:6693553 0 transposed
Cla01g02453 Cla-Chr1:38229879 Cla03g00588 Cla-Chr3:6693553 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60798 PF01852 START 1.10E-49 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00588 K09338 - csv:101211318 1586.24