Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00601 ATGTTGGAACACCTCGCCCGAGAATCAGACGGGGAGCTTGGTTACGAAGCAGCTGTTAATTCAAATTCCAGTCAAAATTCTATGAGCAGTGAGAGTTGTAGTAGTTTCAGTCGTCTCTCCTTTGATGCTGCCATTGATTTACCTACCTCTCGATCTTCGCCGGAGAGTCTTGATTTGAAGCCTCATCGATCGTCTGATTTCGCTTACTCCGCTATTCGTCGACGGAAATCTAAGCTTACCTTTCGTGATTTTCGACTTCTCCGTCGGATTGGTGCTGGCGACATTGGGACTGTTTATTTATGTCAGCTGAGGAAGCTGAGCGAGGGGTGTTATGAGGAGGAAGATGATGATCCGTGTTTGTATGCGATGAAAGTTGTGGATAAAGAAGCGTTGGAATTGAAGAAGAAAGTGCAGAGGGCGGAAATGGAGAGGAGAATATTGAAGATGCTGGATCATCCGTTTTTGCCTACACTCTACGCTGAGTTTGAGGCTTCTCATTTTTCTTGTATTGTTATGGAGTTCTGTTCCGGCGGCGATTTGCATTCTCTCCGCCATAAACAGCCGCGGAAACGCTTCTCTCTCACTTCCGCGAGGTTTTATGCAGCTGAAGTTCTTGTTGCTTTAGAGTACCTTCATATGCTTGGAATCATTTACAGAGACCTTAAACCGGAGAATGTTCTCGTCCGATCAGACGGTCACATTATGTTATCGGATTTCGATTTATCTCTCTGCTCCGACGCCACCCCTGCCGTTGAATCACCCAACTCCTCCCCTACCACGGCGTTTCCCGACGCAACGGCCTACCCCAGAACCAACGCTGCCGTTTCCGCCGCCTCCACAACTCCTTTTTCCTGCCTCTACAACCGTCTTTTCCGGTCGCGCAAGGTCCAAACTCTGACCCCCAACTGGCTCTTTGTCGCAGAGCCCGTTTCCGCTCGGTCCTGCTCTTTCGTCGGTACCCACGAGTACGTCTCGCCGGAAGTTGCCGCCGGCGGGTCCCACGGTAACGCCGTTGACTGGTGGGCCTTTGGAATATTTCTCTACGAGTTGATCTACGGCCGCACGCCGTTTGCGGCTTCGTCCAACGAGACGACGCTAAGGAACATTATAAAGAAGCCGTTGACGTTTCCGACTGCGGTGCCGTCTGGCGCGCTTGAGCACCACGCGCGGGACCTCATATCCGGATTGCTTAACAAGGATCCGACCCGGAGACTTGGGTCGAAACGCGGGTCCGCCGACATCAAGAAGCATCCGTTCTTCAAGGGGCTCAACTTCGCCTTAATTCGGTCGCTCACTCCGCCGGAAATTCCCGGCGTACGACGGCGGAAGCAGACTCCCGTTCCGGCGGCCAAGAGCAAGGACAAGCCGGGTCAGTCAGCCGGCGCGCCCAAACTGCCGGATTTTGTCACTGGCAGATGA 1419 52.78 MLEHLARESDGELGYEAAVNSNSSQNSMSSESCSSFSRLSFDAAIDLPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRKLSEGCYEEEDDDPCLYAMKVVDKEALELKKKVQRAEMERRILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLTSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPNSSPTTAFPDATAYPRTNAAVSAASTTPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGIFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTAVPSGALEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEIPGVRRRKQTPVPAAKSKDKPGQSAGAPKLPDFVTGR 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7033181 7035595 + ClCG03G006420.1 Cla03g00601 269101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00601 472 MobiDBLite consensus disorder prediction 435 472 - -
Cla03g00601 472 CDD STKc_phototropin_like 82 443 - -
Cla03g00601 472 Gene3D Transferase(Phosphotransferase) domain 1 175 242 - -
Cla03g00601 472 Pfam Protein kinase domain 314 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00601 472 Pfam Protein kinase domain 85 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00601 472 PANTHER FLIPPASE KINASE 1-RELATED 1 446 - -
Cla03g00601 472 SMART serkin_6 84 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00601 472 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 446 - -
Cla03g00601 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Cla03g00601 472 Gene3D Phosphorylase Kinase; domain 1 82 174 - -
Cla03g00601 472 Coils Coil 123 150 - -
Cla03g00601 472 SUPERFAMILY Protein kinase-like (PK-like) 63 436 IPR011009 -
Cla03g00601 472 Gene3D Transferase(Phosphotransferase) domain 1 313 438 - -
Cla03g00601 472 ProSiteProfiles Protein kinase domain profile. 84 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00601 Cla-Chr3:7033181 Cla11g00263 Cla-Chr11:3058151 2.76E-140 dispersed
Cla03g00601 Cla-Chr3:7033181 Cla01g01115 Cla-Chr1:18346000 1.40E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80427 PF00069 Pkinase 1.10E-31 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00601 - - csv:101208129 805.823