Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g00613 | ATGGACGGCAGCGCTGGGAGGTCGAAGGCGTTGAGTTCGAGCAATGGTGGTAGAACCCGCGTGGGAAAATACCAGTTGGGTAGAACCCTTGGCGAGGGTAACTTCGCCAAGGTCAAGTTTGCTCGGAATTCTGAGACCGGCGAGAACGTGGCGATCAAAATTCTTGACAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGCGAGATATCAACGATGAAATTAATTAGGCATCCAAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACCGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGAATGAAGGAAGATGAAGCAAGAAAGTATTTCCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCATAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATGATAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTAATGGCTGGTTATCTACCCTTTGAAGATTCCAACCTGGTTGCTTTGTATAAGAAGATACACAAGGCTGACTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAATCCCTCAACGAGAATTACCATTCCAGAGGTCATTGAGAATGAATGGTTTAGAAAAGGTTACAAGCCGCCCACTTTTGAACAAGCTGATATAAGTCTTGATGATGTGGACGCTATTTTCAATGAAACAGGGGATTCGGGTAGTCTCGTTGTGGAAAGAAAAGAGGAAGGATCTAAAGCCCCTCTTGCAATGAATGCATTCGAGCTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAGCGGGAAACCAGGTTCACATCCAATCGACCTGCCAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGCCGTAAAGGCCATTTATCAGTCGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAAGATCCGGACGAAGGAGATAGTGGTGCAAGTGTCTCGCAGTCGAGGTAA | 1395 | 42.8 | MDGSAGRSKALSSSNGGRTRVGKYQLGRTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINDKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDSGSLVVERKEEGSKAPLAMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDPDEGDSGASVSQSR | 464 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 7315854 | 7323960 | - | ClCG03G006540.2 | Cla03g00613 | 269113 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g00613 | 464 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 18 | 451 | - | - | |
| Cla03g00613 | 464 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 53 | IPR017441 | GO:0005524 | |
| Cla03g00613 | 464 | ProSiteProfiles | NAF domain profile. | 321 | 345 | IPR018451 | GO:0007165 | |
| Cla03g00613 | 464 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 289 | IPR011009 | - | |
| Cla03g00613 | 464 | Gene3D | Transferase(Phosphotransferase) domain 1 | 104 | 286 | - | - | |
| Cla03g00613 | 464 | Gene3D | Kinase associated domain 1, KA1 | 320 | 446 | - | - | |
| Cla03g00613 | 464 | SMART | serkin_6 | 24 | 279 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla03g00613 | 464 | PANTHER | SERINE/THREONINE KINASE | 18 | 451 | - | - | |
| Cla03g00613 | 464 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cla03g00613 | 464 | Pfam | Protein kinase domain | 24 | 279 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla03g00613 | 464 | ProSiteProfiles | Protein kinase domain profile. | 24 | 279 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla03g00613 | 464 | CDD | STKc_SnRK3 | 23 | 278 | - | - | |
| Cla03g00613 | 464 | CDD | CIPK_C | 327 | 442 | - | - | |
| Cla03g00613 | 464 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 103 | - | - | |
| Cla03g00613 | 464 | Pfam | NAF domain | 323 | 383 | IPR004041 | GO:0007165 | |
| Cla03g00613 | 464 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672|GO:0006468 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla01g02427 | Cla03g00613 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g00613 | Cla-Chr3:7315854 | Cla04g00656 | Cla-Chr4:21159123 | 4.17E-170 | dispersed | |
| Cla05g00742 | Cla-Chr5:7021191 | Cla03g00613 | Cla-Chr3:7315854 | 3.72E-139 | dispersed | |
| Cla05g01685 | Cla-Chr5:28525381 | Cla03g00613 | Cla-Chr3:7315854 | 4.17E-162 | dispersed | |
| Cla06g00391 | Cla-Chr6:4802415 | Cla03g00613 | Cla-Chr3:7315854 | 2.29E-147 | dispersed | |
| Cla10g01232 | Cla-Chr10:27067368 | Cla03g00613 | Cla-Chr3:7315854 | 1.41E-155 | dispersed | |
| Cla02g02339 | Cla-Chr2:38483633 | Cla03g00613 | Cla-Chr3:7315854 | 0 | transposed | |
| Cla05g00055 | Cla-Chr5:609156 | Cla03g00613 | Cla-Chr3:7315854 | 0 | transposed | |
| Cla06g00040 | Cla-Chr6:435332 | Cla03g00613 | Cla-Chr3:7315854 | 1.20E-86 | transposed | |
| Cla06g01118 | Cla-Chr6:24015221 | Cla03g00613 | Cla-Chr3:7315854 | 1.89E-151 | transposed | |
| Cla08g01182 | Cla-Chr8:24692033 | Cla03g00613 | Cla-Chr3:7315854 | 0 | transposed | |
| Cla10g02039 | Cla-Chr10:36123710 | Cla03g00613 | Cla-Chr3:7315854 | 8.01E-44 | transposed | |
| Cla11g00052 | Cla-Chr11:684173 | Cla03g00613 | Cla-Chr3:7315854 | 3.11E-67 | transposed | |
| Cla11g01469 | Cla-Chr11:28335109 | Cla03g00613 | Cla-Chr3:7315854 | 1.72E-48 | transposed | |
| Cla01g02427 | Cla-Chr1:37880019 | Cla03g00613 | Cla-Chr3:7315854 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 80428 | PF00069 | Pkinase | 7.60E-75 | CL0016 | Cla | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g00613 | - | - | csv:101222334 | 885.945 |